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Record Information

Version

5.0

Status

Detected but not Quantified

Creation Date

2021-09-11 00:28:54 UTC

Update Date

2021-09-26 22:57:12 UTC

HMDB ID

HMDB0247478

Secondary Accession Numbers

None

Metabolite Identification

Common Name

(5S,12R)-5,12-Dihydroxyicosa-6,8,10,14,17-pentaenoic acid

Description

5,12-dihydroxyicosa-6,8,10,14,17-pentaenoic acid belongs to the class of organic compounds known as hydroxyeicosapentaenoic acids. These are eicosanoic acids with an attached hydroxyl group and five CC double bonds. Based on a literature review very few articles have been published on 5,12-dihydroxyicosa-6,8,10,14,17-pentaenoic acid. This compound has been identified in human blood as reported by (PMID: 31557052 ). (5s,12r)-5,12-dihydroxyicosa-6,8,10,14,17-pentaenoic acid is not a naturally occurring metabolite and is only found in those individuals exposed to this compound or its derivatives. Technically (5S,12R)-5,12-Dihydroxyicosa-6,8,10,14,17-pentaenoic acid is part of the human exposome. The exposome can be defined as the collection of all the exposures of an individual in a lifetime and how those exposures relate to health. An individual's exposure begins before birth and includes insults from environmental and occupational sources.

Structure

MOL 3D MOL SDF 3D SDF PDB 3D PDB SMILES InChI

HMDB0247478
     RDKit          3D
(5S,12R)-5,12-Dihydroxyicosa-6,8,10,14,17-pentaenoic acid
 54 53  0  0  0  0  0  0  0  0999 V2000
   -8.5870    0.4851    0.3369 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.6505    1.7006    0.3699 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.9889    1.7214    1.6838 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.7050    1.6542    1.8527 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7124    1.5482    0.7827 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9216    0.2744    0.9451 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9633   -0.6008   -0.0425 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2058   -1.9027    0.0288 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2320   -1.9137   -1.1441 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9321   -1.8208   -2.3495 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2996   -0.7767   -0.9580 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0038   -1.0066   -0.9042 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9704    0.0564   -0.7245 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2672   -0.0730   -0.6596 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9185   -1.3553   -0.7647 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2188   -1.5284   -0.7049 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0645   -0.2923   -0.5137 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.7303    0.1460    0.7752 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.5136   -0.6096   -0.6859 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.3844    0.5799   -0.5248 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.3018    1.2506    0.7991 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.6705    0.3996    1.9499 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.0556   -0.7802    1.8075 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.5850    0.9288    3.2121 O   0  0  0  0  0  0  0  0  0  0  0  0
   -9.4721    0.6866    0.9585 H   0  0  0  0  0  0  0  0  0  0  0  0
   -8.9063    0.2718   -0.7203 H   0  0  0  0  0  0  0  0  0  0  0  0
   -8.0762   -0.4012    0.7136 H   0  0  0  0  0  0  0  0  0  0  0  0
   -8.3428    2.5713    0.2382 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.0282    1.6336   -0.5098 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.6581    1.8003    2.5743 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2982    1.6775    2.8915 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9667    2.4052    0.8465 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1648    1.6225   -0.1936 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3415    0.0658    1.8190 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5502   -0.3795   -0.9154 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8969   -2.7623    0.0039 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5775   -1.8604    0.9415 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6413   -2.8499   -1.1322 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8409   -2.2484   -2.2641 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6808    0.2484   -0.8653 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3612   -2.0177   -0.9970 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5504    1.0737   -0.6347 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.9009    0.7874   -0.5229 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3288   -2.2487   -0.9020 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.7188   -2.4731   -0.7809 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.7482    0.4242   -1.2909 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.6480   -0.6585    1.3460 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.7851   -1.4113    0.0202 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.6239   -1.0339   -1.7292 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.4732    0.3249   -0.6808 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.1796    1.3620   -1.3015 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.3169    1.7327    1.0160 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.0027    2.1394    0.7423 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.3185    1.4324    3.6910 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  2  3
  4  5  1  0
  5  6  1  0
  6  7  2  3
  7  8  1  0
  8  9  1  0
  9 10  1  0
  9 11  1  0
 11 12  2  3
 12 13  1  0
 13 14  2  3
 14 15  1  0
 15 16  2  3
 16 17  1  0
 17 18  1  0
 17 19  1  0
 19 20  1  0
 20 21  1  0
 21 22  1  0
 22 23  2  0
 22 24  1  0
  1 25  1  0
  1 26  1  0
  1 27  1  0
  2 28  1  0
  2 29  1  0
  3 30  1  0
  4 31  1  0
  5 32  1  0
  5 33  1  0
  6 34  1  0
  7 35  1  0
  8 36  1  0
  8 37  1  0
  9 38  1  0
 10 39  1  0
 11 40  1  0
 12 41  1  0
 13 42  1  0
 14 43  1  0
 15 44  1  0
 16 45  1  0
 17 46  1  0
 18 47  1  0
 19 48  1  0
 19 49  1  0
 20 50  1  0
 20 51  1  0
 21 52  1  0
 21 53  1  0
 24 54  1  0
M  END

  Mrv1533004191514522D          

 24 23  0  0  0  0            999 V2000
   -0.3829   10.5039    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0974   10.0914    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0974    9.2664    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8118    8.8539    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8118    8.0289    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0974    7.6164    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0974    6.7914    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3829    6.3789    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3829    5.5539    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0974    5.1414    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.3316    5.1414    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3316    4.3164    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0461    3.9039    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0461    3.0789    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7605    2.6664    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7605    1.8414    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4750    1.4289    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4750    0.6039    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.1895    1.8414    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9039    1.4289    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.6184    1.8414    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.3329    1.4289    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.0474    1.8414    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.3329    0.6039    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  3  2  1  4  0  0  0
  3  4  2  0  0  0  0
  4  5  1  0  0  0  0
  6  5  1  4  0  0  0
  6  7  2  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
 11  9  1  4  0  0  0
 11 12  2  0  0  0  0
 13 12  1  4  0  0  0
 13 14  2  0  0  0  0
 15 14  1  4  0  0  0
 15 16  2  0  0  0  0
 16 17  1  0  0  0  0
 17 18  1  0  0  0  0
 17 19  1  0  0  0  0
 19 20  1  0  0  0  0
 20 21  1  0  0  0  0
 21 22  1  0  0  0  0
 22 23  2  0  0  0  0
 22 24  1  0  0  0  0
M  END
> <DATABASE_ID>
HMDB0247478

> <DATABASE_NAME>
hmdb

> <SMILES>
CCC=CCC=CCC(O)C=CC=CC=CC(O)CCCC(O)=O

> <INCHI_IDENTIFIER>
InChI=1S/C20H30O4/c1-2-3-4-5-6-9-13-18(21)14-10-7-8-11-15-19(22)16-12-17-20(23)24/h3-4,6-11,14-15,18-19,21-22H,2,5,12-13,16-17H2,1H3,(H,23,24)

> <INCHI_KEY>
BISQPGCQOHLHQK-UHFFFAOYSA-N

> <FORMULA>
C20H30O4

> <MOLECULAR_WEIGHT>
334.456

> <EXACT_MASS>
334.214409446

> <JCHEM_ACCEPTOR_COUNT>
4

> <JCHEM_ATOM_COUNT>
54

> <JCHEM_AVERAGE_POLARIZABILITY>
40.51266160586933

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
3

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
5,12-dihydroxyicosa-6,8,10,14,17-pentaenoic acid

> <ALOGPS_LOGP>
4.68

> <JCHEM_LOGP>
3.7636270203333324

> <ALOGPS_LOGS>
-4.32

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
0

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-1

> <JCHEM_PKA>
17.720813880416213

> <JCHEM_PKA_STRONGEST_ACIDIC>
4.6463449725912485

> <JCHEM_PKA_STRONGEST_BASIC>
-1.274938646611163

> <JCHEM_POLAR_SURFACE_AREA>
77.76

> <JCHEM_REFRACTIVITY>
104.1016

> <JCHEM_ROTATABLE_BOND_COUNT>
13

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
1.62e-02 g/l

> <JCHEM_TRADITIONAL_IUPAC>
5,12-dihydroxyicosa-6,8,10,14,17-pentaenoic acid

> <JCHEM_VEBER_RULE>
0

$$$$

HMDB0247478
     RDKit          3D
(5S,12R)-5,12-Dihydroxyicosa-6,8,10,14,17-pentaenoic acid
 54 53  0  0  0  0  0  0  0  0999 V2000
   -8.5870    0.4851    0.3369 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.6505    1.7006    0.3699 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.9889    1.7214    1.6838 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.7050    1.6542    1.8527 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7124    1.5482    0.7827 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9216    0.2744    0.9451 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9633   -0.6008   -0.0425 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2058   -1.9027    0.0288 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2320   -1.9137   -1.1441 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9321   -1.8208   -2.3495 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2996   -0.7767   -0.9580 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0038   -1.0066   -0.9042 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9704    0.0564   -0.7245 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2672   -0.0730   -0.6596 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9185   -1.3553   -0.7647 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2188   -1.5284   -0.7049 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0645   -0.2923   -0.5137 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.7303    0.1460    0.7752 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.5136   -0.6096   -0.6859 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.3844    0.5799   -0.5248 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.3018    1.2506    0.7991 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.6705    0.3996    1.9499 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.0556   -0.7802    1.8075 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.5850    0.9288    3.2121 O   0  0  0  0  0  0  0  0  0  0  0  0
   -9.4721    0.6866    0.9585 H   0  0  0  0  0  0  0  0  0  0  0  0
   -8.9063    0.2718   -0.7203 H   0  0  0  0  0  0  0  0  0  0  0  0
   -8.0762   -0.4012    0.7136 H   0  0  0  0  0  0  0  0  0  0  0  0
   -8.3428    2.5713    0.2382 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.0282    1.6336   -0.5098 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.6581    1.8003    2.5743 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2982    1.6775    2.8915 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9667    2.4052    0.8465 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1648    1.6225   -0.1936 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3415    0.0658    1.8190 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5502   -0.3795   -0.9154 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8969   -2.7623    0.0039 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5775   -1.8604    0.9415 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6413   -2.8499   -1.1322 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8409   -2.2484   -2.2641 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6808    0.2484   -0.8653 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3612   -2.0177   -0.9970 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5504    1.0737   -0.6347 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.9009    0.7874   -0.5229 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3288   -2.2487   -0.9020 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.7188   -2.4731   -0.7809 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.7482    0.4242   -1.2909 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.6480   -0.6585    1.3460 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.7851   -1.4113    0.0202 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.6239   -1.0339   -1.7292 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.4732    0.3249   -0.6808 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.1796    1.3620   -1.3015 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.3169    1.7327    1.0160 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.0027    2.1394    0.7423 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.3185    1.4324    3.6910 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  2  3
  4  5  1  0
  5  6  1  0
  6  7  2  3
  7  8  1  0
  8  9  1  0
  9 10  1  0
  9 11  1  0
 11 12  2  3
 12 13  1  0
 13 14  2  3
 14 15  1  0
 15 16  2  3
 16 17  1  0
 17 18  1  0
 17 19  1  0
 19 20  1  0
 20 21  1  0
 21 22  1  0
 22 23  2  0
 22 24  1  0
  1 25  1  0
  1 26  1  0
  1 27  1  0
  2 28  1  0
  2 29  1  0
  3 30  1  0
  4 31  1  0
  5 32  1  0
  5 33  1  0
  6 34  1  0
  7 35  1  0
  8 36  1  0
  8 37  1  0
  9 38  1  0
 10 39  1  0
 11 40  1  0
 12 41  1  0
 13 42  1  0
 14 43  1  0
 15 44  1  0
 16 45  1  0
 17 46  1  0
 18 47  1  0
 19 48  1  0
 19 49  1  0
 20 50  1  0
 20 51  1  0
 21 52  1  0
 21 53  1  0
 24 54  1  0
M  END

HEADER    PROTEIN                                 19-APR-15   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   19-APR-15         0                                  
HETATM    1  C   UNK     0      -0.715  19.607   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      -2.048  18.837   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0      -2.048  17.297   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0      -3.382  16.527   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0      -3.382  14.987   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0      -2.048  14.217   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0      -2.048  12.677   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0      -0.715  11.907   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0      -0.715  10.367   0.000  0.00  0.00           C+0
HETATM   10  O   UNK     0      -2.048   9.597   0.000  0.00  0.00           O+0
HETATM   11  C   UNK     0       0.619   9.597   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       0.619   8.057   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       1.953   7.287   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       1.953   5.747   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       3.286   4.977   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       3.286   3.437   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       4.620   2.667   0.000  0.00  0.00           C+0
HETATM   18  O   UNK     0       4.620   1.127   0.000  0.00  0.00           O+0
HETATM   19  C   UNK     0       5.954   3.437   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0       7.287   2.667   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0       8.621   3.437   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0       9.955   2.667   0.000  0.00  0.00           C+0
HETATM   23  O   UNK     0      11.288   3.437   0.000  0.00  0.00           O+0
HETATM   24  O   UNK     0       9.955   1.127   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4                                                       
CONECT    4    3    5                                                       
CONECT    5    4    6                                                       
CONECT    6    5    7                                                       
CONECT    7    6    8                                                       
CONECT    8    7    9                                                       
CONECT    9    8   10   11                                                  
CONECT   10    9                                                            
CONECT   11    9   12                                                       
CONECT   12   11   13                                                       
CONECT   13   12   14                                                       
CONECT   14   13   15                                                       
CONECT   15   14   16                                                       
CONECT   16   15   17                                                       
CONECT   17   16   18   19                                                  
CONECT   18   17                                                            
CONECT   19   17   20                                                       
CONECT   20   19   21                                                       
CONECT   21   20   22                                                       
CONECT   22   21   23   24                                                  
CONECT   23   22                                                            
CONECT   24   22                                                            
MASTER        0    0    0    0    0    0    0    0   24    0   46    0
END

COMPND    HMDB0247478
HETATM    1  C1  UNL     1      -8.587   0.485   0.337  1.00  0.00           C  
HETATM    2  C2  UNL     1      -7.650   1.701   0.370  1.00  0.00           C  
HETATM    3  C3  UNL     1      -6.989   1.721   1.684  1.00  0.00           C  
HETATM    4  C4  UNL     1      -5.705   1.654   1.853  1.00  0.00           C  
HETATM    5  C5  UNL     1      -4.712   1.548   0.783  1.00  0.00           C  
HETATM    6  C6  UNL     1      -3.922   0.274   0.945  1.00  0.00           C  
HETATM    7  C7  UNL     1      -3.963  -0.601  -0.042  1.00  0.00           C  
HETATM    8  C8  UNL     1      -3.206  -1.903   0.029  1.00  0.00           C  
HETATM    9  C9  UNL     1      -2.232  -1.914  -1.144  1.00  0.00           C  
HETATM   10  O1  UNL     1      -2.932  -1.821  -2.349  1.00  0.00           O  
HETATM   11  C10 UNL     1      -1.300  -0.777  -0.958  1.00  0.00           C  
HETATM   12  C11 UNL     1       0.004  -1.007  -0.904  1.00  0.00           C  
HETATM   13  C12 UNL     1       0.970   0.056  -0.724  1.00  0.00           C  
HETATM   14  C13 UNL     1       2.267  -0.073  -0.660  1.00  0.00           C  
HETATM   15  C14 UNL     1       2.918  -1.355  -0.765  1.00  0.00           C  
HETATM   16  C15 UNL     1       4.219  -1.528  -0.705  1.00  0.00           C  
HETATM   17  C16 UNL     1       5.065  -0.292  -0.514  1.00  0.00           C  
HETATM   18  O2  UNL     1       4.730   0.146   0.775  1.00  0.00           O  
HETATM   19  C17 UNL     1       6.514  -0.610  -0.686  1.00  0.00           C  
HETATM   20  C18 UNL     1       7.384   0.580  -0.525  1.00  0.00           C  
HETATM   21  C19 UNL     1       7.302   1.251   0.799  1.00  0.00           C  
HETATM   22  C20 UNL     1       7.671   0.400   1.950  1.00  0.00           C  
HETATM   23  O3  UNL     1       8.056  -0.780   1.808  1.00  0.00           O  
HETATM   24  O4  UNL     1       7.585   0.929   3.212  1.00  0.00           O  
HETATM   25  H1  UNL     1      -9.472   0.687   0.958  1.00  0.00           H  
HETATM   26  H2  UNL     1      -8.906   0.272  -0.720  1.00  0.00           H  
HETATM   27  H3  UNL     1      -8.076  -0.401   0.714  1.00  0.00           H  
HETATM   28  H4  UNL     1      -8.343   2.571   0.238  1.00  0.00           H  
HETATM   29  H5  UNL     1      -7.028   1.634  -0.510  1.00  0.00           H  
HETATM   30  H6  UNL     1      -7.658   1.800   2.574  1.00  0.00           H  
HETATM   31  H7  UNL     1      -5.298   1.677   2.891  1.00  0.00           H  
HETATM   32  H8  UNL     1      -3.967   2.405   0.847  1.00  0.00           H  
HETATM   33  H9  UNL     1      -5.165   1.623  -0.194  1.00  0.00           H  
HETATM   34  H10 UNL     1      -3.342   0.066   1.819  1.00  0.00           H  
HETATM   35  H11 UNL     1      -4.550  -0.379  -0.915  1.00  0.00           H  
HETATM   36  H12 UNL     1      -3.897  -2.762   0.004  1.00  0.00           H  
HETATM   37  H13 UNL     1      -2.577  -1.860   0.941  1.00  0.00           H  
HETATM   38  H14 UNL     1      -1.641  -2.850  -1.132  1.00  0.00           H  
HETATM   39  H15 UNL     1      -3.841  -2.248  -2.264  1.00  0.00           H  
HETATM   40  H16 UNL     1      -1.681   0.248  -0.865  1.00  0.00           H  
HETATM   41  H17 UNL     1       0.361  -2.018  -0.997  1.00  0.00           H  
HETATM   42  H18 UNL     1       0.550   1.074  -0.635  1.00  0.00           H  
HETATM   43  H19 UNL     1       2.901   0.787  -0.523  1.00  0.00           H  
HETATM   44  H20 UNL     1       2.329  -2.249  -0.902  1.00  0.00           H  
HETATM   45  H21 UNL     1       4.719  -2.473  -0.781  1.00  0.00           H  
HETATM   46  H22 UNL     1       4.748   0.424  -1.291  1.00  0.00           H  
HETATM   47  H23 UNL     1       4.648  -0.658   1.346  1.00  0.00           H  
HETATM   48  H24 UNL     1       6.785  -1.411   0.020  1.00  0.00           H  
HETATM   49  H25 UNL     1       6.624  -1.034  -1.729  1.00  0.00           H  
HETATM   50  H26 UNL     1       8.473   0.325  -0.681  1.00  0.00           H  
HETATM   51  H27 UNL     1       7.180   1.362  -1.302  1.00  0.00           H  
HETATM   52  H28 UNL     1       6.317   1.733   1.016  1.00  0.00           H  
HETATM   53  H29 UNL     1       8.003   2.139   0.742  1.00  0.00           H  
HETATM   54  H30 UNL     1       8.319   1.432   3.691  1.00  0.00           H  
CONECT    1    2   25   26   27
CONECT    2    3   28   29
CONECT    3    4    4   30
CONECT    4    5   31
CONECT    5    6   32   33
CONECT    6    7    7   34
CONECT    7    8   35
CONECT    8    9   36   37
CONECT    9   10   11   38
CONECT   10   39
CONECT   11   12   12   40
CONECT   12   13   41
CONECT   13   14   14   42
CONECT   14   15   43
CONECT   15   16   16   44
CONECT   16   17   45
CONECT   17   18   19   46
CONECT   18   47
CONECT   19   20   48   49
CONECT   20   21   50   51
CONECT   21   22   52   53
CONECT   22   23   23   24
CONECT   24   54
END

HMDB0247478
     RDKit          3D
(5S,12R)-5,12-Dihydroxyicosa-6,8,10,14,17-pentaenoic acid
 54 53  0  0  0  0  0  0  0  0999 V2000
   -8.5870    0.4851    0.3369 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.6505    1.7006    0.3699 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.9889    1.7214    1.6838 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.7050    1.6542    1.8527 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7124    1.5482    0.7827 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9216    0.2744    0.9451 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9633   -0.6008   -0.0425 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2058   -1.9027    0.0288 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2320   -1.9137   -1.1441 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9321   -1.8208   -2.3495 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2996   -0.7767   -0.9580 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0038   -1.0066   -0.9042 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9704    0.0564   -0.7245 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2672   -0.0730   -0.6596 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9185   -1.3553   -0.7647 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2188   -1.5284   -0.7049 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0645   -0.2923   -0.5137 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.7303    0.1460    0.7752 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.5136   -0.6096   -0.6859 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.3844    0.5799   -0.5248 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.3018    1.2506    0.7991 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.6705    0.3996    1.9499 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.0556   -0.7802    1.8075 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.5850    0.9288    3.2121 O   0  0  0  0  0  0  0  0  0  0  0  0
   -9.4721    0.6866    0.9585 H   0  0  0  0  0  0  0  0  0  0  0  0
   -8.9063    0.2718   -0.7203 H   0  0  0  0  0  0  0  0  0  0  0  0
   -8.0762   -0.4012    0.7136 H   0  0  0  0  0  0  0  0  0  0  0  0
   -8.3428    2.5713    0.2382 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.0282    1.6336   -0.5098 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.6581    1.8003    2.5743 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2982    1.6775    2.8915 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9667    2.4052    0.8465 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1648    1.6225   -0.1936 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3415    0.0658    1.8190 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5502   -0.3795   -0.9154 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8969   -2.7623    0.0039 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5775   -1.8604    0.9415 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6413   -2.8499   -1.1322 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8409   -2.2484   -2.2641 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6808    0.2484   -0.8653 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3612   -2.0177   -0.9970 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5504    1.0737   -0.6347 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.9009    0.7874   -0.5229 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3288   -2.2487   -0.9020 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.7188   -2.4731   -0.7809 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.7482    0.4242   -1.2909 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.6480   -0.6585    1.3460 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.7851   -1.4113    0.0202 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.6239   -1.0339   -1.7292 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.4732    0.3249   -0.6808 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.1796    1.3620   -1.3015 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.3169    1.7327    1.0160 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.0027    2.1394    0.7423 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.3185    1.4324    3.6910 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  2  3
  4  5  1  0
  5  6  1  0
  6  7  2  3
  7  8  1  0
  8  9  1  0
  9 10  1  0
  9 11  1  0
 11 12  2  3
 12 13  1  0
 13 14  2  3
 14 15  1  0
 15 16  2  3
 16 17  1  0
 17 18  1  0
 17 19  1  0
 19 20  1  0
 20 21  1  0
 21 22  1  0
 22 23  2  0
 22 24  1  0
  1 25  1  0
  1 26  1  0
  1 27  1  0
  2 28  1  0
  2 29  1  0
  3 30  1  0
  4 31  1  0
  5 32  1  0
  5 33  1  0
  6 34  1  0
  7 35  1  0
  8 36  1  0
  8 37  1  0
  9 38  1  0
 10 39  1  0
 11 40  1  0
 12 41  1  0
 13 42  1  0
 14 43  1  0
 15 44  1  0
 16 45  1  0
 17 46  1  0
 18 47  1  0
 19 48  1  0
 19 49  1  0
 20 50  1  0
 20 51  1  0
 21 52  1  0
 21 53  1  0
 24 54  1  0
M  END

View in JSmol View Stereo Labels

Synonyms

Value	Source
5,12-Dihydroxyicosa-6,8,10,14,17-pentaenoate	Generator

Chemical Formula

C₂₀H₃₀O₄

Average Molecular Weight

334.456

Monoisotopic Molecular Weight

334.214409446

IUPAC Name

5,12-dihydroxyicosa-6,8,10,14,17-pentaenoic acid

Traditional Name

5,12-dihydroxyicosa-6,8,10,14,17-pentaenoic acid

CAS Registry Number

Not Available

SMILES

CCC=CCC=CCC(O)C=CC=CC=CC(O)CCCC(O)=O

InChI Identifier

InChI=1S/C20H30O4/c1-2-3-4-5-6-9-13-18(21)14-10-7-8-11-15-19(22)16-12-17-20(23)24/h3-4,6-11,14-15,18-19,21-22H,2,5,12-13,16-17H2,1H3,(H,23,24)

InChI Key

BISQPGCQOHLHQK-UHFFFAOYSA-N

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as hydroxyeicosapentaenoic acids. These are eicosanoic acids with an attached hydroxyl group and five CC double bonds.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Fatty Acyls

Sub Class

Eicosanoids

Direct Parent

Hydroxyeicosapentaenoic acids

Alternative Parents

Substituents

Hydroxyeicosapentaenoic acid
Long-chain fatty acid
Hydroxy fatty acid
Fatty acid
Unsaturated fatty acid
Secondary alcohol
Carboxylic acid derivative
Carboxylic acid
Monocarboxylic acid or derivatives
Organic oxide
Organic oxygen compound
Alcohol
Hydrocarbon derivative
Carbonyl group
Organooxygen compound
Aliphatic acyclic compound

Molecular Framework

Aliphatic acyclic compounds

External Descriptors

Not Available

Ontology

Physiological effect

Not Available

Disposition

Biological location

Non-excretory biofluid

Biofluid or Excreta

Blood (PMID: 31557052)

Source

Exogenous

Exogenous (PMID: 31557052)

Process

Not Available

Role

Not Available

Physical Properties

State

Not Available

Experimental Molecular Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Experimental Chromatographic Properties

Not Available

Predicted Molecular Properties

Property	Value	Source
logP	4.68	ALOGPS
logP	3.76	ChemAxon
logS	-4.3	ALOGPS
pKa (Strongest Acidic)	4.65	ChemAxon
pKa (Strongest Basic)	-1.3	ChemAxon
Physiological Charge	-1	ChemAxon
Hydrogen Acceptor Count	4	ChemAxon
Hydrogen Donor Count	3	ChemAxon
Polar Surface Area	77.76 Å²	ChemAxon
Rotatable Bond Count	13	ChemAxon
Refractivity	104.1 m³·mol⁻¹	ChemAxon
Polarizability	40.51 Å³	ChemAxon
Number of Rings	0	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

Predicted Chromatographic Properties

Predicted Collision Cross Sections

Predictor	Adduct Type	CCS Value (Å²)	Reference
DeepCCS	[M+H]+	179.128	30932474
DeepCCS	[M-H]-	176.77	30932474
DeepCCS	[M-2H]-	209.656	30932474
DeepCCS	[M+Na]+	185.221	30932474

Predicted Kovats Retention Indices

Underivatized

Metabolite	SMILES	Kovats RI Value	Column Type	Reference
(5S,12R)-5,12-Dihydroxyicosa-6,8,10,14,17-pentaenoic acid	CCC=CCC=CCC(O)C=CC=CC=CC(O)CCCC(O)=O	4753.9	Standard polar	33892256
(5S,12R)-5,12-Dihydroxyicosa-6,8,10,14,17-pentaenoic acid	CCC=CCC=CCC(O)C=CC=CC=CC(O)CCCC(O)=O	2563.6	Standard non polar	33892256
(5S,12R)-5,12-Dihydroxyicosa-6,8,10,14,17-pentaenoic acid	CCC=CCC=CCC(O)C=CC=CC=CC(O)CCCC(O)=O	2807.5	Semi standard non polar	33892256

Spectra

GC-MS Spectra

Spectrum Type	Description	Splash Key	Deposition Date	Source	View
Predicted GC-MS	Predicted GC-MS Spectrum - (5S,12R)-5,12-Dihydroxyicosa-6,8,10,14,17-pentaenoic acid GC-MS (Non-derivatized) - 70eV, Positive	splash10-066r-5976000000-1308051082500b532d7b	2021-09-23	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - (5S,12R)-5,12-Dihydroxyicosa-6,8,10,14,17-pentaenoic acid GC-MS (Non-derivatized) - 70eV, Positive	Not Available	2021-10-12	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - (5S,12R)-5,12-Dihydroxyicosa-6,8,10,14,17-pentaenoic acid GC-MS (TMS_1_1) - 70eV, Positive	Not Available	2021-11-03	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - (5S,12R)-5,12-Dihydroxyicosa-6,8,10,14,17-pentaenoic acid GC-MS (TMS_1_2) - 70eV, Positive	Not Available	2021-11-03	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - (5S,12R)-5,12-Dihydroxyicosa-6,8,10,14,17-pentaenoic acid GC-MS (TMS_1_3) - 70eV, Positive	Not Available	2021-11-03	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - (5S,12R)-5,12-Dihydroxyicosa-6,8,10,14,17-pentaenoic acid GC-MS (TMS_2_1) - 70eV, Positive	Not Available	2021-11-03	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - (5S,12R)-5,12-Dihydroxyicosa-6,8,10,14,17-pentaenoic acid GC-MS (TMS_2_2) - 70eV, Positive	Not Available	2021-11-03	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - (5S,12R)-5,12-Dihydroxyicosa-6,8,10,14,17-pentaenoic acid GC-MS (TMS_2_3) - 70eV, Positive	Not Available	2021-11-03	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - (5S,12R)-5,12-Dihydroxyicosa-6,8,10,14,17-pentaenoic acid GC-MS (TMS_3_1) - 70eV, Positive	Not Available	2021-11-03	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - (5S,12R)-5,12-Dihydroxyicosa-6,8,10,14,17-pentaenoic acid GC-MS (TBDMS_1_1) - 70eV, Positive	Not Available	2021-11-03	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - (5S,12R)-5,12-Dihydroxyicosa-6,8,10,14,17-pentaenoic acid GC-MS (TBDMS_1_2) - 70eV, Positive	Not Available	2021-11-03	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - (5S,12R)-5,12-Dihydroxyicosa-6,8,10,14,17-pentaenoic acid GC-MS (TBDMS_1_3) - 70eV, Positive	Not Available	2021-11-03	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - (5S,12R)-5,12-Dihydroxyicosa-6,8,10,14,17-pentaenoic acid GC-MS (TBDMS_2_1) - 70eV, Positive	Not Available	2021-11-03	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - (5S,12R)-5,12-Dihydroxyicosa-6,8,10,14,17-pentaenoic acid GC-MS (TBDMS_2_2) - 70eV, Positive	Not Available	2021-11-03	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - (5S,12R)-5,12-Dihydroxyicosa-6,8,10,14,17-pentaenoic acid GC-MS (TBDMS_2_3) - 70eV, Positive	Not Available	2021-11-03	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - (5S,12R)-5,12-Dihydroxyicosa-6,8,10,14,17-pentaenoic acid GC-MS (TBDMS_3_1) - 70eV, Positive	Not Available	2021-11-03	Wishart Lab	View Spectrum

MS/MS Spectra

Spectrum Type	Description	Splash Key	Deposition Date	Source	View
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - (5S,12R)-5,12-Dihydroxyicosa-6,8,10,14,17-pentaenoic acid 10V, Positive-QTOF	splash10-014k-0098000000-746988e090cb417f6f0e	2021-10-12	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - (5S,12R)-5,12-Dihydroxyicosa-6,8,10,14,17-pentaenoic acid 20V, Positive-QTOF	splash10-0002-2592000000-7c86093f3b19ba95ffbe	2021-10-12	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - (5S,12R)-5,12-Dihydroxyicosa-6,8,10,14,17-pentaenoic acid 40V, Positive-QTOF	splash10-05r0-9410000000-35baf3784e923e732e21	2021-10-12	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - (5S,12R)-5,12-Dihydroxyicosa-6,8,10,14,17-pentaenoic acid 10V, Negative-QTOF	splash10-001i-0009000000-1274a6f8c3d97ed0286e	2021-10-12	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - (5S,12R)-5,12-Dihydroxyicosa-6,8,10,14,17-pentaenoic acid 20V, Negative-QTOF	splash10-00lr-2749000000-7d9e79b3bd2b6189e4d9	2021-10-12	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - (5S,12R)-5,12-Dihydroxyicosa-6,8,10,14,17-pentaenoic acid 40V, Negative-QTOF	splash10-052u-5291000000-b78f6f5274e60d632da2	2021-10-12	Wishart Lab	View Spectrum

Biological Properties

Cellular Locations

Not Available

Biospecimen Locations

Blood

Tissue Locations

Not Available

Pathways

Not Available

Name	SMPDB/PathBank	KEGG

Normal Concentrations

Biospecimen	Status	Value	Age	Sex	Condition	Reference	Details
Blood	Detected but not Quantified	Not Quantified	Not Specified	Not Specified	Normal	31557052	details

Abnormal Concentrations

Not Available

Associated Disorders and Diseases

Disease References

None

Associated OMIM IDs

None

External Links

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FooDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

110228

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

123644

PDB ID

Not Available

ChEBI ID

Not Available

Food Biomarker Ontology

Not Available

VMH ID

Not Available

MarkerDB ID

Not Available

Good Scents ID

Not Available

References

Synthesis Reference

Not Available

Material Safety Data Sheet (MSDS)

Not Available

General References

Barupal DK, Fiehn O: Generating the Blood Exposome Database Using a Comprehensive Text Mining and Database Fusion Approach. Environ Health Perspect. 2019 Sep;127(9):97008. doi: 10.1289/EHP4713. Epub 2019 Sep 26. [PubMed:31557052 ]

Showing metabocard for (5S,12R)-5,12-Dihydroxyicosa-6,8,10,14,17-pentaenoic acid (HMDB0247478)

MOL for HMDB0247478 ((5S,12R)-5,12-Dihydroxyicosa-6,8,10,14,17-pentaenoic acid)

3D MOL for HMDB0247478 ((5S,12R)-5,12-Dihydroxyicosa-6,8,10,14,17-pentaenoic acid)

3D SDF for HMDB0247478 ((5S,12R)-5,12-Dihydroxyicosa-6,8,10,14,17-pentaenoic acid)

3D-SDF for HMDB0247478 ((5S,12R)-5,12-Dihydroxyicosa-6,8,10,14,17-pentaenoic acid)

PDB for HMDB0247478 ((5S,12R)-5,12-Dihydroxyicosa-6,8,10,14,17-pentaenoic acid)

3D PDB for HMDB0247478 ((5S,12R)-5,12-Dihydroxyicosa-6,8,10,14,17-pentaenoic acid)

SMILES for HMDB0247478 ((5S,12R)-5,12-Dihydroxyicosa-6,8,10,14,17-pentaenoic acid)

INCHI for HMDB0247478 ((5S,12R)-5,12-Dihydroxyicosa-6,8,10,14,17-pentaenoic acid)

Structure for HMDB0247478 ((5S,12R)-5,12-Dihydroxyicosa-6,8,10,14,17-pentaenoic acid)

3D Structure for HMDB0247478 ((5S,12R)-5,12-Dihydroxyicosa-6,8,10,14,17-pentaenoic acid)

Predicted Collision Cross Sections

Predicted Kovats Retention Indices

Underivatized

GC-MS Spectra

MS/MS Spectra