Record Information |
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Version | 5.0 |
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Status | Detected but not Quantified |
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Creation Date | 2021-09-11 02:10:59 UTC |
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Update Date | 2021-09-26 22:59:11 UTC |
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HMDB ID | HMDB0248737 |
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Secondary Accession Numbers | None |
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Metabolite Identification |
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Common Name | Avatrombopag |
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Description | 1-(3-chloro-5-{[4-(4-chlorothiophen-2-yl)-5-(4-cyclohexylpiperazin-1-yl)-1,3-thiazol-2-yl]-C-hydroxycarbonimidoyl}pyridin-2-yl)piperidine-4-carboxylic acid belongs to the class of organic compounds known as n-arylpiperazines. These are organic compounds containing a piperazine ring where the nitrogen ring atom carries an aryl group. Based on a literature review very few articles have been published on 1-(3-chloro-5-{[4-(4-chlorothiophen-2-yl)-5-(4-cyclohexylpiperazin-1-yl)-1,3-thiazol-2-yl]-C-hydroxycarbonimidoyl}pyridin-2-yl)piperidine-4-carboxylic acid. This compound has been identified in human blood as reported by (PMID: 31557052 ). Avatrombopag is not a naturally occurring metabolite and is only found in those individuals exposed to this compound or its derivatives. Technically Avatrombopag is part of the human exposome. The exposome can be defined as the collection of all the exposures of an individual in a lifetime and how those exposures relate to health. An individual's exposure begins before birth and includes insults from environmental and occupational sources. |
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Structure | OC(=O)C1CCN(CC1)C1=C(Cl)C=C(C=N1)C(=O)NC1=NC(C2=CC(Cl)=CS2)=C(S1)N1CCN(CC1)C1CCCCC1 InChI=1S/C29H34Cl2N6O3S2/c30-20-15-23(41-17-20)24-27(37-12-10-35(11-13-37)21-4-2-1-3-5-21)42-29(33-24)34-26(38)19-14-22(31)25(32-16-19)36-8-6-18(7-9-36)28(39)40/h14-18,21H,1-13H2,(H,39,40)(H,33,34,38) |
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Synonyms | Value | Source |
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1-(3-Chloro-5-{[4-(4-chlorothiophen-2-yl)-5-(4-cyclohexylpiperazin-1-yl)-1,3-thiazol-2-yl]-C-hydroxycarbonimidoyl}pyridin-2-yl)piperidine-4-carboxylate | Generator | e5501 | ChEMBL | 1-(3-chloro-5-((4-(4-chloro-2-Thienyl)-5-(4-cyclohexylpiperazin-1-yl)thiazol-2-yl)carbamoyl)-2-pyridyl)piperidine-4-carboxylic acid | MeSH | AKR-501 | MeSH | e5501 Compound | MeSH | AKR 501 | MeSH |
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Chemical Formula | C29H34Cl2N6O3S2 |
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Average Molecular Weight | 649.65 |
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Monoisotopic Molecular Weight | 648.1510867 |
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IUPAC Name | 1-(3-chloro-5-{[4-(4-chlorothiophen-2-yl)-5-(4-cyclohexylpiperazin-1-yl)-1,3-thiazol-2-yl]carbamoyl}pyridin-2-yl)piperidine-4-carboxylic acid |
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Traditional Name | 1-(3-chloro-5-{[4-(4-chlorothiophen-2-yl)-5-(4-cyclohexylpiperazin-1-yl)-1,3-thiazol-2-yl]carbamoyl}pyridin-2-yl)piperidine-4-carboxylic acid |
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CAS Registry Number | Not Available |
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SMILES | OC(=O)C1CCN(CC1)C1=C(Cl)C=C(C=N1)C(=O)NC1=NC(C2=CC(Cl)=CS2)=C(S1)N1CCN(CC1)C1CCCCC1 |
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InChI Identifier | InChI=1S/C29H34Cl2N6O3S2/c30-20-15-23(41-17-20)24-27(37-12-10-35(11-13-37)21-4-2-1-3-5-21)42-29(33-24)34-26(38)19-14-22(31)25(32-16-19)36-8-6-18(7-9-36)28(39)40/h14-18,21H,1-13H2,(H,39,40)(H,33,34,38) |
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InChI Key | OFZJKCQENFPZBH-UHFFFAOYSA-N |
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Chemical Taxonomy |
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Description | Belongs to the class of organic compounds known as n-arylpiperazines. These are organic compounds containing a piperazine ring where the nitrogen ring atom carries an aryl group. |
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Kingdom | Organic compounds |
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Super Class | Organoheterocyclic compounds |
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Class | Diazinanes |
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Sub Class | Piperazines |
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Direct Parent | N-arylpiperazines |
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Alternative Parents | |
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Substituents | - N-arylpiperazine
- Nicotinamide
- Piperidinecarboxylic acid
- Pyridine carboxylic acid or derivatives
- 2,4,5-trisubstituted 1,3-thiazole
- Dialkylarylamine
- Cyclohexylamine
- N-alkylpiperazine
- Aminopyridine
- Aryl halide
- Aryl chloride
- 1,3-thiazolamine
- Piperidine
- Pyridine
- Imidolactam
- Heteroaromatic compound
- Azole
- Thiazole
- Thiophene
- Secondary carboxylic acid amide
- Amino acid or derivatives
- Amino acid
- Tertiary amine
- Tertiary aliphatic amine
- Carboxamide group
- Monocarboxylic acid or derivatives
- Carboxylic acid
- Carboxylic acid derivative
- Azacycle
- Organic oxygen compound
- Organohalogen compound
- Carbonyl group
- Organochloride
- Organonitrogen compound
- Organooxygen compound
- Amine
- Organic nitrogen compound
- Hydrocarbon derivative
- Organic oxide
- Aromatic heteromonocyclic compound
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Molecular Framework | Aromatic heteromonocyclic compounds |
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External Descriptors | Not Available |
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Ontology |
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Physiological effect | Not Available |
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Disposition | |
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Process | Not Available |
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Role | Not Available |
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Physical Properties |
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State | Not Available |
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Experimental Molecular Properties | Property | Value | Reference |
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Melting Point | Not Available | Not Available | Boiling Point | Not Available | Not Available | Water Solubility | Not Available | Not Available | LogP | Not Available | Not Available |
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Experimental Chromatographic Properties | Not Available |
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Predicted Molecular Properties | | Show more...
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Predicted Chromatographic Properties | Predicted Collision Cross SectionsPredicted Kovats Retention IndicesUnderivatizedDerivatizedDerivative Name / Structure | SMILES | Kovats RI Value | Column Type | Reference |
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Avatrombopag,2TMS,isomer #1 | C[Si](C)(C)OC(=O)C1CCN(C2=NC=C(C(=O)N(C3=NC(C4=CC(Cl)=CS4)=C(N4CCN(C5CCCCC5)CC4)S3)[Si](C)(C)C)C=C2Cl)CC1 | 5390.5 | Semi standard non polar | 33892256 | Avatrombopag,2TMS,isomer #1 | C[Si](C)(C)OC(=O)C1CCN(C2=NC=C(C(=O)N(C3=NC(C4=CC(Cl)=CS4)=C(N4CCN(C5CCCCC5)CC4)S3)[Si](C)(C)C)C=C2Cl)CC1 | 4753.9 | Standard non polar | 33892256 | Avatrombopag,2TMS,isomer #1 | C[Si](C)(C)OC(=O)C1CCN(C2=NC=C(C(=O)N(C3=NC(C4=CC(Cl)=CS4)=C(N4CCN(C5CCCCC5)CC4)S3)[Si](C)(C)C)C=C2Cl)CC1 | 6816.7 | Standard polar | 33892256 | Avatrombopag,2TBDMS,isomer #1 | CC(C)(C)[Si](C)(C)OC(=O)C1CCN(C2=NC=C(C(=O)N(C3=NC(C4=CC(Cl)=CS4)=C(N4CCN(C5CCCCC5)CC4)S3)[Si](C)(C)C(C)(C)C)C=C2Cl)CC1 | 5688.8 | Semi standard non polar | 33892256 | Avatrombopag,2TBDMS,isomer #1 | CC(C)(C)[Si](C)(C)OC(=O)C1CCN(C2=NC=C(C(=O)N(C3=NC(C4=CC(Cl)=CS4)=C(N4CCN(C5CCCCC5)CC4)S3)[Si](C)(C)C(C)(C)C)C=C2Cl)CC1 | 5140.0 | Standard non polar | 33892256 | Avatrombopag,2TBDMS,isomer #1 | CC(C)(C)[Si](C)(C)OC(=O)C1CCN(C2=NC=C(C(=O)N(C3=NC(C4=CC(Cl)=CS4)=C(N4CCN(C5CCCCC5)CC4)S3)[Si](C)(C)C(C)(C)C)C=C2Cl)CC1 | 6661.1 | Standard polar | 33892256 |
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Spectra |
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| GC-MS SpectraSpectrum Type | Description | Splash Key | Deposition Date | Source | View |
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Predicted GC-MS | Predicted GC-MS Spectrum - Avatrombopag GC-MS (TMS_1_1) - 70eV, Positive | Not Available | 2021-11-03 | Wishart Lab | View Spectrum | Predicted GC-MS | Predicted GC-MS Spectrum - Avatrombopag GC-MS (TMS_1_2) - 70eV, Positive | Not Available | 2021-11-03 | Wishart Lab | View Spectrum | Predicted GC-MS | Predicted GC-MS Spectrum - Avatrombopag GC-MS (TBDMS_1_1) - 70eV, Positive | Not Available | 2021-11-03 | Wishart Lab | View Spectrum | Predicted GC-MS | Predicted GC-MS Spectrum - Avatrombopag GC-MS (TBDMS_1_2) - 70eV, Positive | Not Available | 2021-11-03 | Wishart Lab | View Spectrum |
MS/MS SpectraSpectrum Type | Description | Splash Key | Deposition Date | Source | View |
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Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - Avatrombopag 10V, Positive-QTOF | splash10-001j-0013109000-916aedfb266039a3d831 | 2017-07-25 | Wishart Lab | View Spectrum | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - Avatrombopag 20V, Positive-QTOF | splash10-001i-4295103000-0795b875d9b4bc1e58e8 | 2017-07-25 | Wishart Lab | View Spectrum | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - Avatrombopag 40V, Positive-QTOF | splash10-0536-5951001000-3b77b22f08567c73620e | 2017-07-25 | Wishart Lab | View Spectrum | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - Avatrombopag 10V, Negative-QTOF | splash10-0f72-0016097000-de10f82e578d8eba96be | 2017-07-26 | Wishart Lab | View Spectrum | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - Avatrombopag 20V, Negative-QTOF | splash10-0k9i-0219225000-e3f48eac3edf19a08151 | 2017-07-26 | Wishart Lab | View Spectrum | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - Avatrombopag 40V, Negative-QTOF | splash10-000b-2961300000-5fd2f7a105c601cc19c2 | 2017-07-26 | Wishart Lab | View Spectrum | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - Avatrombopag 10V, Positive-QTOF | splash10-0002-0000009000-01a3f4b5efefa7a41f31 | 2021-10-12 | Wishart Lab | View Spectrum | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - Avatrombopag 20V, Positive-QTOF | splash10-000t-0000009000-49460ba4c0dbf4dd54e9 | 2021-10-12 | Wishart Lab | View Spectrum | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - Avatrombopag 40V, Positive-QTOF | splash10-0fkj-1000193000-0eaa321a4968576539a0 | 2021-10-12 | Wishart Lab | View Spectrum | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - Avatrombopag 10V, Negative-QTOF | splash10-0002-0000009000-ebc1c35c13a304c40dcd | 2021-10-12 | Wishart Lab | View Spectrum | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - Avatrombopag 20V, Negative-QTOF | splash10-0frt-3002049000-442a9f532ef21b2a7415 | 2021-10-12 | Wishart Lab | View Spectrum | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - Avatrombopag 40V, Negative-QTOF | splash10-03dr-1269031000-8b73d797a51268c21b8f | 2021-10-12 | Wishart Lab | View Spectrum |
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Biological Properties |
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Cellular Locations | Not Available |
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Biospecimen Locations | |
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Tissue Locations | Not Available |
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Pathways | |
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Normal Concentrations |
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Blood | Detected but not Quantified | Not Quantified | Not Specified | Not Specified | Normal | | details |
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Abnormal Concentrations |
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| Not Available |
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Associated Disorders and Diseases |
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Disease References | None |
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Associated OMIM IDs | None |
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External Links |
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DrugBank ID | Not Available |
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Phenol Explorer Compound ID | Not Available |
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FooDB ID | Not Available |
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KNApSAcK ID | Not Available |
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Chemspider ID | 8028230 |
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KEGG Compound ID | Not Available |
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BioCyc ID | Not Available |
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BiGG ID | Not Available |
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Wikipedia Link | Not Available |
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METLIN ID | Not Available |
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PubChem Compound | Not Available |
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PDB ID | Not Available |
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ChEBI ID | Not Available |
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Food Biomarker Ontology | Not Available |
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VMH ID | Not Available |
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MarkerDB ID | Not Available |
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Good Scents ID | Not Available |
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References |
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Synthesis Reference | Not Available |
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Material Safety Data Sheet (MSDS) | Not Available |
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General References | - Barupal DK, Fiehn O: Generating the Blood Exposome Database Using a Comprehensive Text Mining and Database Fusion Approach. Environ Health Perspect. 2019 Sep;127(9):97008. doi: 10.1289/EHP4713. Epub 2019 Sep 26. [PubMed:31557052 ]
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