Hmdb loader
Record Information
Version5.0
StatusDetected but not Quantified
Creation Date2021-09-11 02:37:03 UTC
Update Date2021-09-26 22:59:23 UTC
HMDB IDHMDB0248873
Secondary Accession NumbersNone
Metabolite Identification
Common NameBaricitinib
DescriptionBaricitinib, also known as olumiant or INCB028050, belongs to the class of organic compounds known as pyrrolo[2,3-d]pyrimidines. These are aromatic heteropolycyclic compounds containing a pyrrolo[2,3-d]pyrimidine ring system, which is an pyrrolopyrimidine isomers having the 3 ring nitrogen atoms at the 1-, 5-, and 7-positions. Based on a literature review very few articles have been published on Baricitinib. This compound has been identified in human blood as reported by (PMID: 31557052 ). Baricitinib is not a naturally occurring metabolite and is only found in those individuals exposed to this compound or its derivatives. Technically Baricitinib is part of the human exposome. The exposome can be defined as the collection of all the exposures of an individual in a lifetime and how those exposures relate to health. An individual's exposure begins before birth and includes insults from environmental and occupational sources.
Structure
Thumb
Synonyms
ValueSource
OlumiantKegg
INCB-28050ly3009104HMDB
INCB028050HMDB
2-[1-(Ethanesulphonyl)-3-(4-{1h-pyrrolo[2,3-D]pyrimidin-4-yl}-1H-pyrazol-1-yl)azetidin-3-yl]acetonitrileHMDB
Chemical FormulaC16H17N7O2S
Average Molecular Weight371.42
Monoisotopic Molecular Weight371.116443989
IUPAC Name2-[1-(ethanesulfonyl)-3-(4-{7H-pyrrolo[2,3-d]pyrimidin-4-yl}-1H-pyrazol-1-yl)azetidin-3-yl]acetonitrile
Traditional Name2-[1-(ethanesulfonyl)-3-(4-{7H-pyrrolo[2,3-d]pyrimidin-4-yl}pyrazol-1-yl)azetidin-3-yl]acetonitrile
CAS Registry NumberNot Available
SMILES
CCS(=O)(=O)N1CC(CC#N)(C1)N1C=C(C=N1)C1=C2C=CNC2=NC=N1
InChI Identifier
InChI=1S/C16H17N7O2S/c1-2-26(24,25)22-9-16(10-22,4-5-17)23-8-12(7-21-23)14-13-3-6-18-15(13)20-11-19-14/h3,6-8,11H,2,4,9-10H2,1H3,(H,18,19,20)
InChI KeyXUZMWHLSFXCVMG-UHFFFAOYSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as pyrrolo[2,3-d]pyrimidines. These are aromatic heteropolycyclic compounds containing a pyrrolo[2,3-d]pyrimidine ring system, which is an pyrrolopyrimidine isomers having the 3 ring nitrogen atoms at the 1-, 5-, and 7-positions.
KingdomOrganic compounds
Super ClassOrganoheterocyclic compounds
ClassPyrrolopyrimidines
Sub ClassPyrrolo[2,3-d]pyrimidines
Direct ParentPyrrolo[2,3-d]pyrimidines
Alternative Parents
Substituents
  • Pyrrolo[2,3-d]pyrimidine
  • Pyrimidine
  • Organic sulfonic acid amide
  • Organosulfonic acid amide
  • Azole
  • Pyrazole
  • Pyrrole
  • Organic sulfonic acid or derivatives
  • Organosulfonic acid or derivatives
  • Sulfonyl
  • Heteroaromatic compound
  • Azetidine
  • Carbonitrile
  • Nitrile
  • Azacycle
  • Organic oxygen compound
  • Organic nitrogen compound
  • Organopnictogen compound
  • Organonitrogen compound
  • Organosulfur compound
  • Hydrocarbon derivative
  • Organic oxide
  • Aromatic heteropolycyclic compound
Molecular FrameworkAromatic heteropolycyclic compounds
External DescriptorsNot Available
Ontology
Physiological effectNot Available
Disposition
ProcessNot Available
RoleNot Available
Physical Properties
StateNot Available
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
logP1.08ALOGPS
logP-0.19ChemAxon
logS-3ALOGPS
pKa (Strongest Acidic)13.89ChemAxon
pKa (Strongest Basic)3.91ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count6ChemAxon
Hydrogen Donor Count1ChemAxon
Polar Surface Area120.56 ŲChemAxon
Rotatable Bond Count4ChemAxon
Refractivity105.55 m³·mol⁻¹ChemAxon
Polarizability36.72 ųChemAxon
Number of Rings4ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterYesChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
DeepCCS[M+H]+179.57430932474
DeepCCS[M-H]-177.21630932474
DeepCCS[M-2H]-211.36230932474
DeepCCS[M+Na]+186.82830932474
AllCCS[M+H]+183.932859911
AllCCS[M+H-H2O]+181.232859911
AllCCS[M+NH4]+186.532859911
AllCCS[M+Na]+187.232859911
AllCCS[M-H]-182.432859911
AllCCS[M+Na-2H]-182.232859911
AllCCS[M+HCOO]-182.032859911

Predicted Kovats Retention Indices

Underivatized

MetaboliteSMILESKovats RI ValueColumn TypeReference
BaricitinibCCS(=O)(=O)N1CC(CC#N)(C1)N1C=C(C=N1)C1=C2C=CNC2=NC=N15020.7Standard polar33892256
BaricitinibCCS(=O)(=O)N1CC(CC#N)(C1)N1C=C(C=N1)C1=C2C=CNC2=NC=N13489.9Standard non polar33892256
BaricitinibCCS(=O)(=O)N1CC(CC#N)(C1)N1C=C(C=N1)C1=C2C=CNC2=NC=N13726.9Semi standard non polar33892256

Derivatized

Derivative Name / StructureSMILESKovats RI ValueColumn TypeReference
Baricitinib,1TMS,isomer #1CCS(=O)(=O)N1CC(CC#N)(N2C=C(C3=NC=NC4=C3C=CN4[Si](C)(C)C)C=N2)C13462.8Semi standard non polar33892256
Baricitinib,1TMS,isomer #1CCS(=O)(=O)N1CC(CC#N)(N2C=C(C3=NC=NC4=C3C=CN4[Si](C)(C)C)C=N2)C13506.3Standard non polar33892256
Baricitinib,1TMS,isomer #1CCS(=O)(=O)N1CC(CC#N)(N2C=C(C3=NC=NC4=C3C=CN4[Si](C)(C)C)C=N2)C15134.0Standard polar33892256
Baricitinib,1TBDMS,isomer #1CCS(=O)(=O)N1CC(CC#N)(N2C=C(C3=NC=NC4=C3C=CN4[Si](C)(C)C(C)(C)C)C=N2)C13645.3Semi standard non polar33892256
Baricitinib,1TBDMS,isomer #1CCS(=O)(=O)N1CC(CC#N)(N2C=C(C3=NC=NC4=C3C=CN4[Si](C)(C)C(C)(C)C)C=N2)C13755.7Standard non polar33892256
Baricitinib,1TBDMS,isomer #1CCS(=O)(=O)N1CC(CC#N)(N2C=C(C3=NC=NC4=C3C=CN4[Si](C)(C)C(C)(C)C)C=N2)C15079.6Standard polar33892256
Spectra

GC-MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted GC-MSPredicted GC-MS Spectrum - Baricitinib GC-MS (Non-derivatized) - 70eV, Positivesplash10-004i-9362000000-0e97820f52a9991d14192021-09-23Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Baricitinib GC-MS (Non-derivatized) - 70eV, PositiveNot Available2021-10-12Wishart LabView Spectrum

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Baricitinib 10V, Positive-QTOFsplash10-00di-1219000000-6fa31e49e108be9084832017-07-25Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Baricitinib 20V, Positive-QTOFsplash10-0a4l-3964000000-754d812e94a1407aa2032017-07-25Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Baricitinib 40V, Positive-QTOFsplash10-0002-9720000000-a83fecb42ab025ba86fa2017-07-25Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Baricitinib 10V, Negative-QTOFsplash10-0300-1294000000-afb84db266bf6933b5c02017-07-26Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Baricitinib 20V, Negative-QTOFsplash10-052f-3719000000-97cbc394ce7d41ae5da92017-07-26Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Baricitinib 40V, Negative-QTOFsplash10-01ox-9201000000-2f1faf038cc61eced6872017-07-26Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Baricitinib 10V, Positive-QTOFsplash10-00di-0009000000-940be979c20cb493c4942021-10-12Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Baricitinib 20V, Positive-QTOFsplash10-00di-0149000000-0b93b8bf2be133cc11672021-10-12Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Baricitinib 40V, Positive-QTOFsplash10-0f79-2290000000-6d5cf4bbb18553e6f58c2021-10-12Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Baricitinib 10V, Negative-QTOFsplash10-00di-0009000000-4b69070afb65176af3042021-10-12Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Baricitinib 20V, Negative-QTOFsplash10-00b9-1295000000-e3fe9c9696ca39d3f7812021-10-12Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Baricitinib 40V, Negative-QTOFsplash10-03e9-9720000000-bf065631db0fec4ae5152021-10-12Wishart LabView Spectrum

NMR Spectra

Spectrum TypeDescriptionDeposition DateSourceView
Predicted 1D NMR13C NMR Spectrum (1D, 100 MHz, D2O, predicted)2021-10-13Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 100 MHz, D2O, predicted)2021-10-13Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 1000 MHz, D2O, predicted)2021-10-13Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 1000 MHz, D2O, predicted)2021-10-13Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 200 MHz, D2O, predicted)2021-10-13Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 200 MHz, D2O, predicted)2021-10-13Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 300 MHz, D2O, predicted)2021-10-13Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 300 MHz, D2O, predicted)2021-10-13Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 400 MHz, D2O, predicted)2021-10-13Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 400 MHz, D2O, predicted)2021-10-13Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 500 MHz, D2O, predicted)2021-10-13Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 500 MHz, D2O, predicted)2021-10-13Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 600 MHz, D2O, predicted)2021-10-13Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 600 MHz, D2O, predicted)2021-10-13Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 700 MHz, D2O, predicted)2021-10-13Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 700 MHz, D2O, predicted)2021-10-13Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 800 MHz, D2O, predicted)2021-10-13Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 800 MHz, D2O, predicted)2021-10-13Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 900 MHz, D2O, predicted)2021-10-13Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 900 MHz, D2O, predicted)2021-10-13Wishart LabView Spectrum
Biological Properties
Cellular LocationsNot Available
Biospecimen Locations
  • Blood
Tissue LocationsNot Available
Pathways
Normal Concentrations
BiospecimenStatusValueAgeSexConditionReferenceDetails
BloodDetected but not QuantifiedNot QuantifiedNot SpecifiedNot SpecifiedNormal details
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDDB11817
Phenol Explorer Compound IDNot Available
FooDB IDNot Available
KNApSAcK IDNot Available
Chemspider ID26373084
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkBaricitinib
METLIN IDNot Available
PubChem Compound44205240
PDB IDNot Available
ChEBI IDNot Available
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General References
  1. Barupal DK, Fiehn O: Generating the Blood Exposome Database Using a Comprehensive Text Mining and Database Fusion Approach. Environ Health Perspect. 2019 Sep;127(9):97008. doi: 10.1289/EHP4713. Epub 2019 Sep 26. [PubMed:31557052 ]