Hmdb loader

Showing metabocard for Benzo[c]cinnoline (HMDB0249005)

Jump To Section:
IdentificationTaxonomyOntologyPhysical propertiesSpectraBiological propertiesConcentrationsLinksReferencesXML
Show more...Show more...Show more...
Record Information
Version5.0
StatusDetected but not Quantified
Creation Date2021-09-11 03:28:07 UTC
Update Date2021-09-26 22:59:36 UTC
HMDB IDHMDB0249005
Secondary Accession NumbersNone
Metabolite Identification
Common NameBenzo[c]cinnoline
DescriptionBenzo[c]cinnoline belongs to the class of organic compounds known as cinnolines. These are organic aromatic compounds containing a benzene fused to a pyridazine ring. Based on a literature review a significant number of articles have been published on Benzo[c]cinnoline. This compound has been identified in human blood as reported by (PMID: 31557052 ). Benzo[c]cinnoline is not a naturally occurring metabolite and is only found in those individuals exposed to this compound or its derivatives. Technically Benzo[c]cinnoline is part of the human exposome. The exposome can be defined as the collection of all the exposures of an individual in a lifetime and how those exposures relate to health. An individual's exposure begins before birth and includes insults from environmental and occupational sources.
Structure
Thumb
MOL3D MOLSDF3D SDFPDB3D PDBSMILESInChI

MOL for HMDB0249005 (Benzo[c]cinnoline)

  Mrv1652309112105282D          

 14 16  0  0  0  0            999 V2000
    3.6020   -0.3020    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0145    0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6020    1.1270    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7770    1.1270    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3645    0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7770   -0.3020    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5395    0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1270   -0.3020    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3020   -0.3020    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1105    0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3020    1.1270    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1270    1.1270    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5395    1.8414    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    2.3645    1.8414    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0  0  0  0
  2  3  1  0  0  0  0
  3  4  2  0  0  0  0
  4  5  1  0  0  0  0
  5  6  2  0  0  0  0
  1  6  1  0  0  0  0
  5  7  1  0  0  0  0
  7  8  2  0  0  0  0
  8  9  1  0  0  0  0
  9 10  2  0  0  0  0
 10 11  1  0  0  0  0
 11 12  2  0  0  0  0
  7 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  2  0  0  0  0
  4 14  1  0  0  0  0
M  END
Download

3D MOL for HMDB0249005 (Benzo[c]cinnoline)

HMDB0249005
     RDKit          3D
Benzo[c]cinnoline
 22 24  0  0  0  0  0  0  0  0999 V2000
   -3.4638   -0.1484   -0.2338 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7834    0.8006   -0.9469 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3945    0.8743   -0.8649 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6988   -0.0051   -0.0677 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3755   -0.9769    0.6646 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7452   -1.0159    0.5559 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6867   -1.8273    1.4371 N   0  0  0  0  0  0  0  0  0  0  0  0
    0.6291   -1.7341    1.4955 N   0  0  0  0  0  0  0  0  0  0  0  0
    1.3293   -0.8296    0.8213 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7132   -0.7824    0.9246 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4502    0.1466    0.2339 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7702    1.0520   -0.5831 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3987    1.0273   -0.7038 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6887    0.0835    0.0019 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5602   -0.2139   -0.2926 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2682    1.5206   -1.5909 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8543    1.6107   -1.4169 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2837   -1.7696    1.1224 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.2338   -1.5021    1.5720 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.5341    0.1752    0.3218 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.4081    1.7606   -1.1022 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.9589    1.7538   -1.3485 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0
  2  3  1  0
  3  4  2  0
  4  5  1  0
  5  6  2  0
  5  7  1  0
  7  8  2  0
  8  9  1  0
  9 10  2  0
 10 11  1  0
 11 12  2  0
 12 13  1  0
 13 14  2  0
  6  1  1  0
 14  9  1  0
 14  4  1  0
  1 15  1  0
  2 16  1  0
  3 17  1  0
  6 18  1  0
 10 19  1  0
 11 20  1  0
 12 21  1  0
 13 22  1  0
M  END
Download

3D SDF for HMDB0249005 (Benzo[c]cinnoline)

  Mrv1652309112105282D          

 14 16  0  0  0  0            999 V2000
    3.6020   -0.3020    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0145    0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6020    1.1270    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7770    1.1270    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3645    0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7770   -0.3020    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5395    0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1270   -0.3020    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3020   -0.3020    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1105    0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3020    1.1270    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1270    1.1270    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5395    1.8414    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    2.3645    1.8414    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0  0  0  0
  2  3  1  0  0  0  0
  3  4  2  0  0  0  0
  4  5  1  0  0  0  0
  5  6  2  0  0  0  0
  1  6  1  0  0  0  0
  5  7  1  0  0  0  0
  7  8  2  0  0  0  0
  8  9  1  0  0  0  0
  9 10  2  0  0  0  0
 10 11  1  0  0  0  0
 11 12  2  0  0  0  0
  7 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  2  0  0  0  0
  4 14  1  0  0  0  0
M  END
> <DATABASE_ID>
HMDB0249005

> <DATABASE_NAME>
hmdb

> <SMILES>
C1=CC=C2C(=C1)N=NC1=CC=CC=C21

> <INCHI_IDENTIFIER>
InChI=1S/C12H8N2/c1-3-7-11-9(5-1)10-6-2-4-8-12(10)14-13-11/h1-8H

> <INCHI_KEY>
SWJXWSAKHXBQSY-UHFFFAOYSA-N

> <FORMULA>
C12H8N2

> <MOLECULAR_WEIGHT>
180.21

> <EXACT_MASS>
180.068748266

> <JCHEM_ACCEPTOR_COUNT>
2

> <JCHEM_ATOM_COUNT>
22

> <JCHEM_AVERAGE_POLARIZABILITY>
19.083340229828888

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
0

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
benzo[c]cinnoline

> <ALOGPS_LOGP>
2.34

> <JCHEM_LOGP>
2.526457602

> <ALOGPS_LOGS>
-3.19

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
3

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA_STRONGEST_BASIC>
2.0065671381525254

> <JCHEM_POLAR_SURFACE_AREA>
25.78

> <JCHEM_REFRACTIVITY>
55.9208

> <JCHEM_ROTATABLE_BOND_COUNT>
0

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
1.17e-01 g/l

> <JCHEM_VEBER_RULE>
1

$$$$
Download

3D-SDF for HMDB0249005 (Benzo[c]cinnoline)

HMDB0249005
     RDKit          3D
Benzo[c]cinnoline
 22 24  0  0  0  0  0  0  0  0999 V2000
   -3.4638   -0.1484   -0.2338 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7834    0.8006   -0.9469 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3945    0.8743   -0.8649 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6988   -0.0051   -0.0677 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3755   -0.9769    0.6646 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7452   -1.0159    0.5559 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6867   -1.8273    1.4371 N   0  0  0  0  0  0  0  0  0  0  0  0
    0.6291   -1.7341    1.4955 N   0  0  0  0  0  0  0  0  0  0  0  0
    1.3293   -0.8296    0.8213 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7132   -0.7824    0.9246 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4502    0.1466    0.2339 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7702    1.0520   -0.5831 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3987    1.0273   -0.7038 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6887    0.0835    0.0019 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5602   -0.2139   -0.2926 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2682    1.5206   -1.5909 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8543    1.6107   -1.4169 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2837   -1.7696    1.1224 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.2338   -1.5021    1.5720 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.5341    0.1752    0.3218 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.4081    1.7606   -1.1022 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.9589    1.7538   -1.3485 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0
  2  3  1  0
  3  4  2  0
  4  5  1  0
  5  6  2  0
  5  7  1  0
  7  8  2  0
  8  9  1  0
  9 10  2  0
 10 11  1  0
 11 12  2  0
 12 13  1  0
 13 14  2  0
  6  1  1  0
 14  9  1  0
 14  4  1  0
  1 15  1  0
  2 16  1  0
  3 17  1  0
  6 18  1  0
 10 19  1  0
 11 20  1  0
 12 21  1  0
 13 22  1  0
M  END
Download

PDB for HMDB0249005 (Benzo[c]cinnoline)

HEADER    PROTEIN                                 11-SEP-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   11-SEP-21         0                                  
HETATM    1  C   UNK     0       6.724  -0.564   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       7.494   0.770   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       6.724   2.104   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       5.184   2.104   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       4.414   0.770   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       5.184  -0.564   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       2.874   0.770   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       2.104  -0.564   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       0.564  -0.564   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0      -0.206   0.770   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       0.564   2.104   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       2.104   2.104   0.000  0.00  0.00           C+0
HETATM   13  N   UNK     0       2.874   3.437   0.000  0.00  0.00           N+0
HETATM   14  N   UNK     0       4.414   3.437   0.000  0.00  0.00           N+0
CONECT    1    2    6                                                       
CONECT    2    1    3                                                       
CONECT    3    2    4                                                       
CONECT    4    3    5   14                                                  
CONECT    5    4    6    7                                                  
CONECT    6    5    1                                                       
CONECT    7    5    8   12                                                  
CONECT    8    7    9                                                       
CONECT    9    8   10                                                       
CONECT   10    9   11                                                       
CONECT   11   10   12                                                       
CONECT   12   11    7   13                                                  
CONECT   13   12   14                                                       
CONECT   14   13    4                                                       
MASTER        0    0    0    0    0    0    0    0   14    0   32    0
END
Download

3D PDB for HMDB0249005 (Benzo[c]cinnoline)

COMPND    HMDB0249005
HETATM    1  C1  UNL     1      -3.464  -0.148  -0.234  1.00  0.00           C  
HETATM    2  C2  UNL     1      -2.783   0.801  -0.947  1.00  0.00           C  
HETATM    3  C3  UNL     1      -1.394   0.874  -0.865  1.00  0.00           C  
HETATM    4  C4  UNL     1      -0.699  -0.005  -0.068  1.00  0.00           C  
HETATM    5  C5  UNL     1      -1.376  -0.977   0.665  1.00  0.00           C  
HETATM    6  C6  UNL     1      -2.745  -1.016   0.556  1.00  0.00           C  
HETATM    7  N1  UNL     1      -0.687  -1.827   1.437  1.00  0.00           N  
HETATM    8  N2  UNL     1       0.629  -1.734   1.496  1.00  0.00           N  
HETATM    9  C7  UNL     1       1.329  -0.830   0.821  1.00  0.00           C  
HETATM   10  C8  UNL     1       2.713  -0.782   0.925  1.00  0.00           C  
HETATM   11  C9  UNL     1       3.450   0.147   0.234  1.00  0.00           C  
HETATM   12  C10 UNL     1       2.770   1.052  -0.583  1.00  0.00           C  
HETATM   13  C11 UNL     1       1.399   1.027  -0.704  1.00  0.00           C  
HETATM   14  C12 UNL     1       0.689   0.084   0.002  1.00  0.00           C  
HETATM   15  H1  UNL     1      -4.560  -0.214  -0.293  1.00  0.00           H  
HETATM   16  H2  UNL     1      -3.268   1.521  -1.591  1.00  0.00           H  
HETATM   17  H3  UNL     1      -0.854   1.611  -1.417  1.00  0.00           H  
HETATM   18  H4  UNL     1      -3.284  -1.770   1.122  1.00  0.00           H  
HETATM   19  H5  UNL     1       3.234  -1.502   1.572  1.00  0.00           H  
HETATM   20  H6  UNL     1       4.534   0.175   0.322  1.00  0.00           H  
HETATM   21  H7  UNL     1       3.408   1.761  -1.102  1.00  0.00           H  
HETATM   22  H8  UNL     1       0.959   1.754  -1.349  1.00  0.00           H  
CONECT    1    2    2    6   15
CONECT    2    3   16
CONECT    3    4    4   17
CONECT    4    5   14
CONECT    5    6    6    7
CONECT    6   18
CONECT    7    8    8
CONECT    8    9
CONECT    9   10   10   14
CONECT   10   11   19
CONECT   11   12   12   20
CONECT   12   13   21
CONECT   13   14   14   22
END
Download

SMILES for HMDB0249005 (Benzo[c]cinnoline)

C1=CC=C2C(=C1)N=NC1=CC=CC=C21
Download

INCHI for HMDB0249005 (Benzo[c]cinnoline)

InChI=1S/C12H8N2/c1-3-7-11-9(5-1)10-6-2-4-8-12(10)14-13-11/h1-8H
Download
View in JSmolView Stereo Labels
Synonyms
ValueSource
Benzo(c)cinnolineHMDB
BenzocinnolineHMDB
Chemical FormulaC12H8N2
Average Molecular Weight180.21
Monoisotopic Molecular Weight180.068748266
IUPAC Namebenzo[c]cinnoline
Traditional NameNot Available
CAS Registry NumberNot Available
SMILES
C1=CC=C2C(=C1)N=NC1=CC=CC=C21
InChI Identifier
InChI=1S/C12H8N2/c1-3-7-11-9(5-1)10-6-2-4-8-12(10)14-13-11/h1-8H
InChI KeySWJXWSAKHXBQSY-UHFFFAOYSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as cinnolines. These are organic aromatic compounds containing a benzene fused to a pyridazine ring.
KingdomOrganic compounds
Super ClassOrganoheterocyclic compounds
ClassDiazanaphthalenes
Sub ClassBenzodiazines
Direct ParentCinnolines
Alternative Parents
Substituents
  • Cinnoline
  • Benzenoid
  • Pyridazine
  • Heteroaromatic compound
  • Azacycle
  • Organic nitrogen compound
  • Organopnictogen compound
  • Hydrocarbon derivative
  • Organonitrogen compound
  • Aromatic heteropolycyclic compound
Molecular FrameworkAromatic heteropolycyclic compounds
External DescriptorsNot Available
Ontology
Physiological effectNot Available
Disposition
Biological locationSource
ProcessNot Available
RoleNot Available
Physical Properties
StateNot Available
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
Predicted Chromatographic Properties
Spectra
Biological Properties
Cellular LocationsNot Available
Biospecimen Locations
  • Blood
Tissue LocationsNot Available
Pathways
Normal Concentrations
BiospecimenStatusValueAgeSexConditionReferenceDetails
BloodDetected but not QuantifiedNot QuantifiedNot SpecifiedNot SpecifiedNormal details
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDNot Available
KNApSAcK IDNot Available
Chemspider ID8835
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound9190
PDB IDNot Available
ChEBI IDNot Available
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General References
  1. Barupal DK, Fiehn O: Generating the Blood Exposome Database Using a Comprehensive Text Mining and Database Fusion Approach. Environ Health Perspect. 2019 Sep;127(9):97008. doi: 10.1289/EHP4713. Epub 2019 Sep 26. [PubMed:31557052 ]