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Showing metabocard for Thiazole, 4,5-dihydro-2,4,4-trimethyl- (HMDB0249392)

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Record Information
Version5.0
StatusDetected but not Quantified
Creation Date2021-09-11 03:54:14 UTC
Update Date2021-09-26 23:00:12 UTC
HMDB IDHMDB0249392
Secondary Accession NumbersNone
Metabolite Identification
Common NameThiazole, 4,5-dihydro-2,4,4-trimethyl-
DescriptionThiazole, 4,5-dihydro-2,4,4-trimethyl- belongs to the class of organic compounds known as thiazolines. These are heterocyclic compounds containing a five-member unsaturated aliphatic ring with one nitrogen atom, one sulfur atom, three carbon atoms. Based on a literature review very few articles have been published on Thiazole, 4,5-dihydro-2,4,4-trimethyl-. This compound has been identified in human blood as reported by (PMID: 31557052 ). Thiazole, 4,5-dihydro-2,4,4-trimethyl- is not a naturally occurring metabolite and is only found in those individuals exposed to this compound or its derivatives. Technically Thiazole, 4,5-dihydro-2,4,4-trimethyl- is part of the human exposome. The exposome can be defined as the collection of all the exposures of an individual in a lifetime and how those exposures relate to health. An individual's exposure begins before birth and includes insults from environmental and occupational sources.
Structure
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MOL3D MOLSDF3D SDFPDB3D PDBSMILESInChI

MOL for HMDB0249392 (Thiazole, 4,5-dihydro-2,4,4-trimethyl-)

  Mrv1652309112105542D          

  8  8  0  0  0  0            999 V2000
   -0.3297   -0.8227    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1553   -0.1553    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0997    0.6294    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    0.5678    1.1143    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2352    0.6294    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9803   -0.1553    0.0000 S   0  0  0  0  0  0  0  0  0  0  0  0
    0.1628    1.8330    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9728    1.8330    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  2  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  2  6  1  0  0  0  0
  4  7  1  0  0  0  0
  4  8  1  0  0  0  0
M  END
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3D MOL for HMDB0249392 (Thiazole, 4,5-dihydro-2,4,4-trimethyl-)

HMDB0249392
     RDKit          3D
Thiazole, 4,5-dihydro-2,4,4-trimethyl-
 19 19  0  0  0  0  0  0  0  0999 V2000
    2.9681   -0.0881    0.7766 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5994   -0.0456    0.1783 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4739   -0.0563    0.6896 N   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6793   -0.0100   -0.0560 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4909   -1.2908   -0.0711 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6041    1.0408    0.5849 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4431    0.4851   -1.4618 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3412    0.0440   -1.5935 S   0  0  0  0  0  0  0  0  0  0  0  0
    2.9585   -0.0927    1.8728 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.4675   -1.0360    0.4340 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.5997    0.7370    0.3560 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9149   -1.4187   -1.0759 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8383   -2.1237    0.2557 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3445   -1.2624    0.6354 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4812    1.1545   -0.0798 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9900    0.5512    1.5207 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0688    1.9697    0.7967 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5605    1.5623   -1.5758 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9925   -0.1202   -2.1869 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  2  0
  3  4  1  0
  4  5  1  0
  4  6  1  0
  4  7  1  0
  7  8  1  0
  8  2  1  0
  1  9  1  0
  1 10  1  0
  1 11  1  0
  5 12  1  0
  5 13  1  0
  5 14  1  0
  6 15  1  0
  6 16  1  0
  6 17  1  0
  7 18  1  0
  7 19  1  0
M  END
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3D SDF for HMDB0249392 (Thiazole, 4,5-dihydro-2,4,4-trimethyl-)

  Mrv1652309112105542D          

  8  8  0  0  0  0            999 V2000
   -0.3297   -0.8227    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1553   -0.1553    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0997    0.6294    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    0.5678    1.1143    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2352    0.6294    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9803   -0.1553    0.0000 S   0  0  0  0  0  0  0  0  0  0  0  0
    0.1628    1.8330    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9728    1.8330    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  2  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  2  6  1  0  0  0  0
  4  7  1  0  0  0  0
  4  8  1  0  0  0  0
M  END
> <DATABASE_ID>
HMDB0249392

> <DATABASE_NAME>
hmdb

> <SMILES>
CC1=NC(C)(C)CS1

> <INCHI_IDENTIFIER>
InChI=1S/C6H11NS/c1-5-7-6(2,3)4-8-5/h4H2,1-3H3

> <INCHI_KEY>
RHYWBMKYLKNBET-UHFFFAOYSA-N

> <FORMULA>
C6H11NS

> <MOLECULAR_WEIGHT>
129.22

> <EXACT_MASS>
129.061220532

> <JCHEM_ACCEPTOR_COUNT>
1

> <JCHEM_ATOM_COUNT>
19

> <JCHEM_AVERAGE_POLARIZABILITY>
14.575246381125213

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
0

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
2,4,4-trimethyl-4,5-dihydro-1,3-thiazole

> <ALOGPS_LOGP>
2.02

> <JCHEM_LOGP>
1.1794567530000002

> <ALOGPS_LOGS>
-1.73

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
1

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA_STRONGEST_BASIC>
5.272331256521204

> <JCHEM_POLAR_SURFACE_AREA>
12.36

> <JCHEM_REFRACTIVITY>
37.953500000000005

> <JCHEM_ROTATABLE_BOND_COUNT>
0

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
2.42e+00 g/l

> <JCHEM_TRADITIONAL_IUPAC>
2,4,4-trimethyl-5H-1,3-thiazole

> <JCHEM_VEBER_RULE>
1

$$$$
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3D-SDF for HMDB0249392 (Thiazole, 4,5-dihydro-2,4,4-trimethyl-)

HMDB0249392
     RDKit          3D
Thiazole, 4,5-dihydro-2,4,4-trimethyl-
 19 19  0  0  0  0  0  0  0  0999 V2000
    2.9681   -0.0881    0.7766 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5994   -0.0456    0.1783 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4739   -0.0563    0.6896 N   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6793   -0.0100   -0.0560 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4909   -1.2908   -0.0711 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6041    1.0408    0.5849 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4431    0.4851   -1.4618 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3412    0.0440   -1.5935 S   0  0  0  0  0  0  0  0  0  0  0  0
    2.9585   -0.0927    1.8728 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.4675   -1.0360    0.4340 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.5997    0.7370    0.3560 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9149   -1.4187   -1.0759 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8383   -2.1237    0.2557 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3445   -1.2624    0.6354 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4812    1.1545   -0.0798 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9900    0.5512    1.5207 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0688    1.9697    0.7967 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5605    1.5623   -1.5758 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9925   -0.1202   -2.1869 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  2  0
  3  4  1  0
  4  5  1  0
  4  6  1  0
  4  7  1  0
  7  8  1  0
  8  2  1  0
  1  9  1  0
  1 10  1  0
  1 11  1  0
  5 12  1  0
  5 13  1  0
  5 14  1  0
  6 15  1  0
  6 16  1  0
  6 17  1  0
  7 18  1  0
  7 19  1  0
M  END
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PDB for HMDB0249392 (Thiazole, 4,5-dihydro-2,4,4-trimethyl-)

HEADER    PROTEIN                                 11-SEP-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   11-SEP-21         0                                  
HETATM    1  C   UNK     0      -0.615  -1.536   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       0.290  -0.290   0.000  0.00  0.00           C+0
HETATM    3  N   UNK     0      -0.186   1.175   0.000  0.00  0.00           N+0
HETATM    4  C   UNK     0       1.060   2.080   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       2.306   1.175   0.000  0.00  0.00           C+0
HETATM    6  S   UNK     0       1.830  -0.290   0.000  0.00  0.00           S+0
HETATM    7  C   UNK     0       0.304   3.422   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       1.816   3.422   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3    6                                                  
CONECT    3    2    4                                                       
CONECT    4    3    5    7    8                                             
CONECT    5    4    6                                                       
CONECT    6    5    2                                                       
CONECT    7    4                                                            
CONECT    8    4                                                            
MASTER        0    0    0    0    0    0    0    0    8    0   16    0
END
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3D PDB for HMDB0249392 (Thiazole, 4,5-dihydro-2,4,4-trimethyl-)

COMPND    HMDB0249392
HETATM    1  C1  UNL     1       2.968  -0.088   0.777  1.00  0.00           C  
HETATM    2  C2  UNL     1       1.599  -0.046   0.178  1.00  0.00           C  
HETATM    3  N1  UNL     1       0.474  -0.056   0.690  1.00  0.00           N  
HETATM    4  C3  UNL     1      -0.679  -0.010  -0.056  1.00  0.00           C  
HETATM    5  C4  UNL     1      -1.491  -1.291  -0.071  1.00  0.00           C  
HETATM    6  C5  UNL     1      -1.604   1.041   0.585  1.00  0.00           C  
HETATM    7  C6  UNL     1      -0.443   0.485  -1.462  1.00  0.00           C  
HETATM    8  S1  UNL     1       1.341   0.044  -1.593  1.00  0.00           S  
HETATM    9  H1  UNL     1       2.959  -0.093   1.873  1.00  0.00           H  
HETATM   10  H2  UNL     1       3.467  -1.036   0.434  1.00  0.00           H  
HETATM   11  H3  UNL     1       3.600   0.737   0.356  1.00  0.00           H  
HETATM   12  H4  UNL     1      -1.915  -1.419  -1.076  1.00  0.00           H  
HETATM   13  H5  UNL     1      -0.838  -2.124   0.256  1.00  0.00           H  
HETATM   14  H6  UNL     1      -2.345  -1.262   0.635  1.00  0.00           H  
HETATM   15  H7  UNL     1      -2.481   1.155  -0.080  1.00  0.00           H  
HETATM   16  H8  UNL     1      -1.990   0.551   1.521  1.00  0.00           H  
HETATM   17  H9  UNL     1      -1.069   1.970   0.797  1.00  0.00           H  
HETATM   18  H10 UNL     1      -0.560   1.562  -1.576  1.00  0.00           H  
HETATM   19  H11 UNL     1      -0.993  -0.120  -2.187  1.00  0.00           H  
CONECT    1    2    9   10   11
CONECT    2    3    3    8
CONECT    3    4
CONECT    4    5    6    7
CONECT    5   12   13   14
CONECT    6   15   16   17
CONECT    7    8   18   19
END
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SMILES for HMDB0249392 (Thiazole, 4,5-dihydro-2,4,4-trimethyl-)

CC1=NC(C)(C)CS1
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INCHI for HMDB0249392 (Thiazole, 4,5-dihydro-2,4,4-trimethyl-)

InChI=1S/C6H11NS/c1-5-7-6(2,3)4-8-5/h4H2,1-3H3
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SynonymsNot Available
Chemical FormulaC6H11NS
Average Molecular Weight129.22
Monoisotopic Molecular Weight129.061220532
IUPAC Name2,4,4-trimethyl-4,5-dihydro-1,3-thiazole
Traditional Name2,4,4-trimethyl-5H-1,3-thiazole
CAS Registry NumberNot Available
SMILES
CC1=NC(C)(C)CS1
InChI Identifier
InChI=1S/C6H11NS/c1-5-7-6(2,3)4-8-5/h4H2,1-3H3
InChI KeyRHYWBMKYLKNBET-UHFFFAOYSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as thiazolines. These are heterocyclic compounds containing a five-member unsaturated aliphatic ring with one nitrogen atom, one sulfur atom, three carbon atoms.
KingdomOrganic compounds
Super ClassOrganoheterocyclic compounds
ClassAzolines
Sub ClassThiazolines
Direct ParentThiazolines
Alternative Parents
Substituents
  • Meta-thiazoline
  • Azacycle
  • Organic 1,3-dipolar compound
  • Propargyl-type 1,3-dipolar organic compound
  • Organic nitrogen compound
  • Organopnictogen compound
  • Hydrocarbon derivative
  • Organonitrogen compound
  • Aliphatic heteromonocyclic compound
Molecular FrameworkAliphatic heteromonocyclic compounds
External DescriptorsNot Available
Ontology
Physiological effectNot Available
Disposition
Biological locationSource
ProcessNot Available
RoleNot Available
Physical Properties
StateNot Available
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
Predicted Chromatographic Properties
Spectra
Biological Properties
Cellular LocationsNot Available
Biospecimen Locations
  • Blood
Tissue LocationsNot Available
Pathways
Normal Concentrations
BiospecimenStatusValueAgeSexConditionReferenceDetails
BloodDetected but not QuantifiedNot QuantifiedNot SpecifiedNot SpecifiedNormal details
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDNot Available
KNApSAcK IDNot Available
Chemspider ID172602
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound199406
PDB IDNot Available
ChEBI IDNot Available
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General References
  1. Barupal DK, Fiehn O: Generating the Blood Exposome Database Using a Comprehensive Text Mining and Database Fusion Approach. Environ Health Perspect. 2019 Sep;127(9):97008. doi: 10.1289/EHP4713. Epub 2019 Sep 26. [PubMed:31557052 ]