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Record Information

Version

5.0

Status

Detected but not Quantified

Creation Date

2021-09-11 03:54:48 UTC

Update Date

2021-09-26 23:00:15 UTC

HMDB ID

HMDB0249402

Secondary Accession Numbers

None

Metabolite Identification

Common Name

Eicosapentaenoic acid ethyl ester

Description

ethyl icosa-5,8,11,14,17-pentaenoate belongs to the class of organic compounds known as fatty acid esters. These are carboxylic ester derivatives of a fatty acid. Based on a literature review very few articles have been published on ethyl icosa-5,8,11,14,17-pentaenoate. This compound has been identified in human blood as reported by (PMID: 31557052 ). Eicosapentaenoic acid ethyl ester is not a naturally occurring metabolite and is only found in those individuals exposed to this compound or its derivatives. Technically Eicosapentaenoic acid ethyl ester is part of the human exposome. The exposome can be defined as the collection of all the exposures of an individual in a lifetime and how those exposures relate to health. An individual's exposure begins before birth and includes insults from environmental and occupational sources.

Structure

MOL 3D MOL SDF 3D SDF PDB 3D PDB SMILES InChI

HMDB0249402
     RDKit          3D
Eicosapentaenoic acid ethyl ester
 58 57  0  0  0  0  0  0  0  0999 V2000
   -9.9874   -1.0928   -1.5023 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.8401   -0.7998   -2.4696 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.2584    0.4888   -2.0609 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.0440    0.7121   -1.6819 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.9446   -0.2698   -1.5656 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4671   -0.3015   -0.1747 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2812   -0.0317    0.2392 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1479    0.3742   -0.6508 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7170    1.7103   -0.1961 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5300    1.9906    0.2318 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4072    1.0377    0.3408 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0307    1.0176    1.7926 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1452    1.3435    2.2251 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3166    1.7795    1.4766 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5056    0.8617    1.6508 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3709   -0.1976    2.4190 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.4273   -1.1949    2.6926 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.6963   -1.0002    1.9681 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.6675   -1.1493    0.4882 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.0530   -0.8770   -0.0349 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.9754   -0.5854    0.7635 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.3460   -0.9371   -1.3692 O   0  0  0  0  0  0  0  0  0  0  0  0
    8.6584   -0.6812   -1.8863 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.7006   -0.8145   -3.3729 C   0  0  0  0  0  0  0  0  0  0  0  0
  -10.5941   -1.9503   -1.8520 H   0  0  0  0  0  0  0  0  0  0  0  0
   -9.5590   -1.2459   -0.5075 H   0  0  0  0  0  0  0  0  0  0  0  0
  -10.5914   -0.1536   -1.4681 H   0  0  0  0  0  0  0  0  0  0  0  0
   -9.2770   -0.6394   -3.4964 H   0  0  0  0  0  0  0  0  0  0  0  0
   -8.1357   -1.6317   -2.5284 H   0  0  0  0  0  0  0  0  0  0  0  0
   -8.9531    1.3566   -2.0864 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.7488    1.7496   -1.4014 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1593   -0.0599   -2.2859 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.4002   -1.2907   -1.7377 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.2069   -0.5893    0.6093 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0850   -0.1054    1.3351 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4574    0.4721   -1.7104 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3167   -0.3405   -0.5369 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4375    2.5609   -0.2082 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2835    3.0327    0.5596 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5928    0.0146    0.0250 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4401    1.4140   -0.2787 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8330    0.7004    2.4993 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.2723    1.2867    3.3369 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.6301    2.8073    1.8095 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.1316    1.8300    0.3977 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.4256    1.1551    1.1398 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3665   -0.3328    2.8875 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.9777   -2.1987    2.4935 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.6900   -1.2108    3.7971 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.0758    0.0433    2.1950 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.4805   -1.6814    2.3671 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.4953   -2.2614    0.3017 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.8811   -0.6637   -0.0603 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.3833   -1.3204   -1.3530 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.8694    0.3798   -1.6209 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.7620   -1.0839   -3.6452 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.5318    0.1681   -3.8927 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.0111   -1.5950   -3.7247 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  2  3
  4  5  1  0
  5  6  1  0
  6  7  2  3
  7  8  1  0
  8  9  1  0
  9 10  2  3
 10 11  1  0
 11 12  1  0
 12 13  2  3
 13 14  1  0
 14 15  1  0
 15 16  2  3
 16 17  1  0
 17 18  1  0
 18 19  1  0
 19 20  1  0
 20 21  2  0
 20 22  1  0
 22 23  1  0
 23 24  1  0
  1 25  1  0
  1 26  1  0
  1 27  1  0
  2 28  1  0
  2 29  1  0
  3 30  1  0
  4 31  1  0
  5 32  1  0
  5 33  1  0
  6 34  1  0
  7 35  1  0
  8 36  1  0
  8 37  1  0
  9 38  1  0
 10 39  1  0
 11 40  1  0
 11 41  1  0
 12 42  1  0
 13 43  1  0
 14 44  1  0
 14 45  1  0
 15 46  1  0
 16 47  1  0
 17 48  1  0
 17 49  1  0
 18 50  1  0
 18 51  1  0
 19 52  1  0
 19 53  1  0
 23 54  1  0
 23 55  1  0
 24 56  1  0
 24 57  1  0
 24 58  1  0
M  END


  Mrv1652309112105552D          

 24 23  0  0  0  0            999 V2000
   -3.2408    3.0789    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9552    2.6664    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9552    1.8414    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6697    1.4289    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6697    0.6039    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9552    0.1914    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9552   -0.6336    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2408   -1.0461    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5263   -0.6336    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8118   -1.0461    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0974   -0.6336    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0974    0.1914    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3829    0.6039    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3829    1.4289    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3316    1.8414    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0461    1.4289    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7605    1.8414    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4750    1.4289    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1895    1.8414    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9039    1.4289    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9039    0.6039    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.6184    1.8414    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.3329    1.4289    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.0474    1.8414    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  3  2  1  4  0  0  0
  3  4  2  0  0  0  0
  4  5  1  0  0  0  0
  6  5  1  4  0  0  0
  6  7  2  0  0  0  0
  7  8  1  0  0  0  0
  9  8  1  4  0  0  0
  9 10  2  0  0  0  0
 10 11  1  0  0  0  0
 12 11  1  4  0  0  0
 12 13  2  0  0  0  0
 13 14  1  0  0  0  0
 15 14  1  4  0  0  0
 15 16  2  0  0  0  0
 16 17  1  0  0  0  0
 17 18  1  0  0  0  0
 18 19  1  0  0  0  0
 19 20  1  0  0  0  0
 20 21  2  0  0  0  0
 20 22  1  0  0  0  0
 22 23  1  0  0  0  0
 23 24  1  0  0  0  0
M  END
> <DATABASE_ID>
HMDB0249402

> <DATABASE_NAME>
hmdb

> <SMILES>
CCOC(=O)CCCC=CCC=CCC=CCC=CCC=CCC

> <INCHI_IDENTIFIER>
InChI=1S/C22H34O2/c1-3-5-6-7-8-9-10-11-12-13-14-15-16-17-18-19-20-21-22(23)24-4-2/h5-6,8-9,11-12,14-15,17-18H,3-4,7,10,13,16,19-21H2,1-2H3

> <INCHI_KEY>
SSQPWTVBQMWLSZ-UHFFFAOYSA-N

> <FORMULA>
C22H34O2

> <MOLECULAR_WEIGHT>
330.512

> <EXACT_MASS>
330.255880335

> <JCHEM_ACCEPTOR_COUNT>
1

> <JCHEM_ATOM_COUNT>
58

> <JCHEM_AVERAGE_POLARIZABILITY>
40.42448876245099

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
0

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
ethyl icosa-5,8,11,14,17-pentaenoate

> <ALOGPS_LOGP>
6.80

> <JCHEM_LOGP>
6.727951165

> <ALOGPS_LOGS>
-6.53

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
0

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA_STRONGEST_BASIC>
-7.03224093634593

> <JCHEM_POLAR_SURFACE_AREA>
26.3

> <JCHEM_REFRACTIVITY>
110.5883

> <JCHEM_ROTATABLE_BOND_COUNT>
15

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
9.83e-05 g/l

> <JCHEM_TRADITIONAL_IUPAC>
ethyl eicosapentaenoic acid

> <JCHEM_VEBER_RULE>
0

$$$$

HMDB0249402
     RDKit          3D
Eicosapentaenoic acid ethyl ester
 58 57  0  0  0  0  0  0  0  0999 V2000
   -9.9874   -1.0928   -1.5023 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.8401   -0.7998   -2.4696 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.2584    0.4888   -2.0609 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.0440    0.7121   -1.6819 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.9446   -0.2698   -1.5656 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4671   -0.3015   -0.1747 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2812   -0.0317    0.2392 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1479    0.3742   -0.6508 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7170    1.7103   -0.1961 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5300    1.9906    0.2318 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4072    1.0377    0.3408 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0307    1.0176    1.7926 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1452    1.3435    2.2251 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3166    1.7795    1.4766 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5056    0.8617    1.6508 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3709   -0.1976    2.4190 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.4273   -1.1949    2.6926 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.6963   -1.0002    1.9681 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.6675   -1.1493    0.4882 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.0530   -0.8770   -0.0349 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.9754   -0.5854    0.7635 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.3460   -0.9371   -1.3692 O   0  0  0  0  0  0  0  0  0  0  0  0
    8.6584   -0.6812   -1.8863 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.7006   -0.8145   -3.3729 C   0  0  0  0  0  0  0  0  0  0  0  0
  -10.5941   -1.9503   -1.8520 H   0  0  0  0  0  0  0  0  0  0  0  0
   -9.5590   -1.2459   -0.5075 H   0  0  0  0  0  0  0  0  0  0  0  0
  -10.5914   -0.1536   -1.4681 H   0  0  0  0  0  0  0  0  0  0  0  0
   -9.2770   -0.6394   -3.4964 H   0  0  0  0  0  0  0  0  0  0  0  0
   -8.1357   -1.6317   -2.5284 H   0  0  0  0  0  0  0  0  0  0  0  0
   -8.9531    1.3566   -2.0864 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.7488    1.7496   -1.4014 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1593   -0.0599   -2.2859 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.4002   -1.2907   -1.7377 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.2069   -0.5893    0.6093 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0850   -0.1054    1.3351 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4574    0.4721   -1.7104 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3167   -0.3405   -0.5369 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4375    2.5609   -0.2082 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2835    3.0327    0.5596 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5928    0.0146    0.0250 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4401    1.4140   -0.2787 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8330    0.7004    2.4993 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.2723    1.2867    3.3369 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.6301    2.8073    1.8095 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.1316    1.8300    0.3977 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.4256    1.1551    1.1398 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3665   -0.3328    2.8875 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.9777   -2.1987    2.4935 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.6900   -1.2108    3.7971 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.0758    0.0433    2.1950 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.4805   -1.6814    2.3671 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.4953   -2.2614    0.3017 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.8811   -0.6637   -0.0603 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.3833   -1.3204   -1.3530 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.8694    0.3798   -1.6209 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.7620   -1.0839   -3.6452 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.5318    0.1681   -3.8927 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.0111   -1.5950   -3.7247 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  2  3
  4  5  1  0
  5  6  1  0
  6  7  2  3
  7  8  1  0
  8  9  1  0
  9 10  2  3
 10 11  1  0
 11 12  1  0
 12 13  2  3
 13 14  1  0
 14 15  1  0
 15 16  2  3
 16 17  1  0
 17 18  1  0
 18 19  1  0
 19 20  1  0
 20 21  2  0
 20 22  1  0
 22 23  1  0
 23 24  1  0
  1 25  1  0
  1 26  1  0
  1 27  1  0
  2 28  1  0
  2 29  1  0
  3 30  1  0
  4 31  1  0
  5 32  1  0
  5 33  1  0
  6 34  1  0
  7 35  1  0
  8 36  1  0
  8 37  1  0
  9 38  1  0
 10 39  1  0
 11 40  1  0
 11 41  1  0
 12 42  1  0
 13 43  1  0
 14 44  1  0
 14 45  1  0
 15 46  1  0
 16 47  1  0
 17 48  1  0
 17 49  1  0
 18 50  1  0
 18 51  1  0
 19 52  1  0
 19 53  1  0
 23 54  1  0
 23 55  1  0
 24 56  1  0
 24 57  1  0
 24 58  1  0
M  END

HEADER    PROTEIN                                 11-SEP-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   11-SEP-21         0                                  
HETATM    1  C   UNK     0      -6.049   5.747   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      -7.383   4.977   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0      -7.383   3.437   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0      -8.717   2.667   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0      -8.717   1.127   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0      -7.383   0.357   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0      -7.383  -1.183   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0      -6.049  -1.953   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0      -4.716  -1.183   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0      -3.382  -1.953   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0      -2.048  -1.183   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0      -2.048   0.357   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0      -0.715   1.127   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0      -0.715   2.667   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       0.619   3.437   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       1.953   2.667   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       3.286   3.437   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       4.620   2.667   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0       5.954   3.437   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0       7.287   2.667   0.000  0.00  0.00           C+0
HETATM   21  O   UNK     0       7.287   1.127   0.000  0.00  0.00           O+0
HETATM   22  O   UNK     0       8.621   3.437   0.000  0.00  0.00           O+0
HETATM   23  C   UNK     0       9.955   2.667   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0      11.288   3.437   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4                                                       
CONECT    4    3    5                                                       
CONECT    5    4    6                                                       
CONECT    6    5    7                                                       
CONECT    7    6    8                                                       
CONECT    8    7    9                                                       
CONECT    9    8   10                                                       
CONECT   10    9   11                                                       
CONECT   11   10   12                                                       
CONECT   12   11   13                                                       
CONECT   13   12   14                                                       
CONECT   14   13   15                                                       
CONECT   15   14   16                                                       
CONECT   16   15   17                                                       
CONECT   17   16   18                                                       
CONECT   18   17   19                                                       
CONECT   19   18   20                                                       
CONECT   20   19   21   22                                                  
CONECT   21   20                                                            
CONECT   22   20   23                                                       
CONECT   23   22   24                                                       
CONECT   24   23                                                            
MASTER        0    0    0    0    0    0    0    0   24    0   46    0
END

COMPND    HMDB0249402
HETATM    1  C1  UNL     1      -9.987  -1.093  -1.502  1.00  0.00           C  
HETATM    2  C2  UNL     1      -8.840  -0.800  -2.470  1.00  0.00           C  
HETATM    3  C3  UNL     1      -8.258   0.489  -2.061  1.00  0.00           C  
HETATM    4  C4  UNL     1      -7.044   0.712  -1.682  1.00  0.00           C  
HETATM    5  C5  UNL     1      -5.945  -0.270  -1.566  1.00  0.00           C  
HETATM    6  C6  UNL     1      -5.467  -0.301  -0.175  1.00  0.00           C  
HETATM    7  C7  UNL     1      -4.281  -0.032   0.239  1.00  0.00           C  
HETATM    8  C8  UNL     1      -3.148   0.374  -0.651  1.00  0.00           C  
HETATM    9  C9  UNL     1      -2.717   1.710  -0.196  1.00  0.00           C  
HETATM   10  C10 UNL     1      -1.530   1.991   0.232  1.00  0.00           C  
HETATM   11  C11 UNL     1      -0.407   1.038   0.341  1.00  0.00           C  
HETATM   12  C12 UNL     1      -0.031   1.018   1.793  1.00  0.00           C  
HETATM   13  C13 UNL     1       1.145   1.343   2.225  1.00  0.00           C  
HETATM   14  C14 UNL     1       2.317   1.780   1.477  1.00  0.00           C  
HETATM   15  C15 UNL     1       3.506   0.862   1.651  1.00  0.00           C  
HETATM   16  C16 UNL     1       3.371  -0.198   2.419  1.00  0.00           C  
HETATM   17  C17 UNL     1       4.427  -1.195   2.693  1.00  0.00           C  
HETATM   18  C18 UNL     1       5.696  -1.000   1.968  1.00  0.00           C  
HETATM   19  C19 UNL     1       5.667  -1.149   0.488  1.00  0.00           C  
HETATM   20  C20 UNL     1       7.053  -0.877  -0.035  1.00  0.00           C  
HETATM   21  O1  UNL     1       7.975  -0.585   0.763  1.00  0.00           O  
HETATM   22  O2  UNL     1       7.346  -0.937  -1.369  1.00  0.00           O  
HETATM   23  C21 UNL     1       8.658  -0.681  -1.886  1.00  0.00           C  
HETATM   24  C22 UNL     1       8.701  -0.814  -3.373  1.00  0.00           C  
HETATM   25  H1  UNL     1     -10.594  -1.950  -1.852  1.00  0.00           H  
HETATM   26  H2  UNL     1      -9.559  -1.246  -0.508  1.00  0.00           H  
HETATM   27  H3  UNL     1     -10.591  -0.154  -1.468  1.00  0.00           H  
HETATM   28  H4  UNL     1      -9.277  -0.639  -3.496  1.00  0.00           H  
HETATM   29  H5  UNL     1      -8.136  -1.632  -2.528  1.00  0.00           H  
HETATM   30  H6  UNL     1      -8.953   1.357  -2.086  1.00  0.00           H  
HETATM   31  H7  UNL     1      -6.749   1.750  -1.401  1.00  0.00           H  
HETATM   32  H8  UNL     1      -5.159  -0.060  -2.286  1.00  0.00           H  
HETATM   33  H9  UNL     1      -6.400  -1.291  -1.738  1.00  0.00           H  
HETATM   34  H10 UNL     1      -6.207  -0.589   0.609  1.00  0.00           H  
HETATM   35  H11 UNL     1      -4.085  -0.105   1.335  1.00  0.00           H  
HETATM   36  H12 UNL     1      -3.457   0.472  -1.710  1.00  0.00           H  
HETATM   37  H13 UNL     1      -2.317  -0.341  -0.537  1.00  0.00           H  
HETATM   38  H14 UNL     1      -3.438   2.561  -0.208  1.00  0.00           H  
HETATM   39  H15 UNL     1      -1.283   3.033   0.560  1.00  0.00           H  
HETATM   40  H16 UNL     1      -0.593   0.015   0.025  1.00  0.00           H  
HETATM   41  H17 UNL     1       0.440   1.414  -0.279  1.00  0.00           H  
HETATM   42  H18 UNL     1      -0.833   0.700   2.499  1.00  0.00           H  
HETATM   43  H19 UNL     1       1.272   1.287   3.337  1.00  0.00           H  
HETATM   44  H20 UNL     1       2.630   2.807   1.810  1.00  0.00           H  
HETATM   45  H21 UNL     1       2.132   1.830   0.398  1.00  0.00           H  
HETATM   46  H22 UNL     1       4.426   1.155   1.140  1.00  0.00           H  
HETATM   47  H23 UNL     1       2.366  -0.333   2.887  1.00  0.00           H  
HETATM   48  H24 UNL     1       3.978  -2.199   2.494  1.00  0.00           H  
HETATM   49  H25 UNL     1       4.690  -1.211   3.797  1.00  0.00           H  
HETATM   50  H26 UNL     1       6.076   0.043   2.195  1.00  0.00           H  
HETATM   51  H27 UNL     1       6.480  -1.681   2.367  1.00  0.00           H  
HETATM   52  H28 UNL     1       5.495  -2.261   0.302  1.00  0.00           H  
HETATM   53  H29 UNL     1       4.881  -0.664  -0.060  1.00  0.00           H  
HETATM   54  H30 UNL     1       9.383  -1.320  -1.353  1.00  0.00           H  
HETATM   55  H31 UNL     1       8.869   0.380  -1.621  1.00  0.00           H  
HETATM   56  H32 UNL     1       9.762  -1.084  -3.645  1.00  0.00           H  
HETATM   57  H33 UNL     1       8.532   0.168  -3.893  1.00  0.00           H  
HETATM   58  H34 UNL     1       8.011  -1.595  -3.725  1.00  0.00           H  
CONECT    1    2   25   26   27
CONECT    2    3   28   29
CONECT    3    4    4   30
CONECT    4    5   31
CONECT    5    6   32   33
CONECT    6    7    7   34
CONECT    7    8   35
CONECT    8    9   36   37
CONECT    9   10   10   38
CONECT   10   11   39
CONECT   11   12   40   41
CONECT   12   13   13   42
CONECT   13   14   43
CONECT   14   15   44   45
CONECT   15   16   16   46
CONECT   16   17   47
CONECT   17   18   48   49
CONECT   18   19   50   51
CONECT   19   20   52   53
CONECT   20   21   21   22
CONECT   22   23
CONECT   23   24   54   55
CONECT   24   56   57   58
END

HMDB0249402
     RDKit          3D
Eicosapentaenoic acid ethyl ester
 58 57  0  0  0  0  0  0  0  0999 V2000
   -9.9874   -1.0928   -1.5023 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.8401   -0.7998   -2.4696 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.2584    0.4888   -2.0609 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.0440    0.7121   -1.6819 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.9446   -0.2698   -1.5656 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4671   -0.3015   -0.1747 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2812   -0.0317    0.2392 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1479    0.3742   -0.6508 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7170    1.7103   -0.1961 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5300    1.9906    0.2318 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4072    1.0377    0.3408 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0307    1.0176    1.7926 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1452    1.3435    2.2251 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3166    1.7795    1.4766 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5056    0.8617    1.6508 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3709   -0.1976    2.4190 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.4273   -1.1949    2.6926 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.6963   -1.0002    1.9681 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.6675   -1.1493    0.4882 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.0530   -0.8770   -0.0349 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.9754   -0.5854    0.7635 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.3460   -0.9371   -1.3692 O   0  0  0  0  0  0  0  0  0  0  0  0
    8.6584   -0.6812   -1.8863 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.7006   -0.8145   -3.3729 C   0  0  0  0  0  0  0  0  0  0  0  0
  -10.5941   -1.9503   -1.8520 H   0  0  0  0  0  0  0  0  0  0  0  0
   -9.5590   -1.2459   -0.5075 H   0  0  0  0  0  0  0  0  0  0  0  0
  -10.5914   -0.1536   -1.4681 H   0  0  0  0  0  0  0  0  0  0  0  0
   -9.2770   -0.6394   -3.4964 H   0  0  0  0  0  0  0  0  0  0  0  0
   -8.1357   -1.6317   -2.5284 H   0  0  0  0  0  0  0  0  0  0  0  0
   -8.9531    1.3566   -2.0864 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.7488    1.7496   -1.4014 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1593   -0.0599   -2.2859 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.4002   -1.2907   -1.7377 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.2069   -0.5893    0.6093 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0850   -0.1054    1.3351 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4574    0.4721   -1.7104 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3167   -0.3405   -0.5369 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4375    2.5609   -0.2082 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2835    3.0327    0.5596 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5928    0.0146    0.0250 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4401    1.4140   -0.2787 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8330    0.7004    2.4993 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.2723    1.2867    3.3369 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.6301    2.8073    1.8095 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.1316    1.8300    0.3977 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.4256    1.1551    1.1398 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3665   -0.3328    2.8875 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.9777   -2.1987    2.4935 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.6900   -1.2108    3.7971 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.0758    0.0433    2.1950 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.4805   -1.6814    2.3671 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.4953   -2.2614    0.3017 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.8811   -0.6637   -0.0603 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.3833   -1.3204   -1.3530 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.8694    0.3798   -1.6209 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.7620   -1.0839   -3.6452 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.5318    0.1681   -3.8927 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.0111   -1.5950   -3.7247 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  2  3
  4  5  1  0
  5  6  1  0
  6  7  2  3
  7  8  1  0
  8  9  1  0
  9 10  2  3
 10 11  1  0
 11 12  1  0
 12 13  2  3
 13 14  1  0
 14 15  1  0
 15 16  2  3
 16 17  1  0
 17 18  1  0
 18 19  1  0
 19 20  1  0
 20 21  2  0
 20 22  1  0
 22 23  1  0
 23 24  1  0
  1 25  1  0
  1 26  1  0
  1 27  1  0
  2 28  1  0
  2 29  1  0
  3 30  1  0
  4 31  1  0
  5 32  1  0
  5 33  1  0
  6 34  1  0
  7 35  1  0
  8 36  1  0
  8 37  1  0
  9 38  1  0
 10 39  1  0
 11 40  1  0
 11 41  1  0
 12 42  1  0
 13 43  1  0
 14 44  1  0
 14 45  1  0
 15 46  1  0
 16 47  1  0
 17 48  1  0
 17 49  1  0
 18 50  1  0
 18 51  1  0
 19 52  1  0
 19 53  1  0
 23 54  1  0
 23 55  1  0
 24 56  1  0
 24 57  1  0
 24 58  1  0
M  END

View in JSmol View Stereo Labels

Synonyms

Value	Source
Ethyl icosa-5,8,11,14,17-pentaenoic acid	Generator
Eicosapentaenoate ethyl ester	Generator
AMR-101	MeSH
Epadel	MeSH
Ethyl (5Z,8Z,11Z,14Z,17Z)-icosa-5,8,11,14,17-pentaenoate	MeSH
Ethyl all-cis-5,8,11,14,17-icosapentaenoate	MeSH
Ethyl eicosapentaenoate	MeSH
Ethyl eicosapentaenoic acid	MeSH
Ethyl icosapentaenoate	MeSH
Ethyl-epa	MeSH
Ethyl-eicosapentaenoic acid	MeSH
Icosapent ethyl	MeSH
Vascepa	MeSH

Chemical Formula

C₂₂H₃₄O₂

Average Molecular Weight

330.512

Monoisotopic Molecular Weight

330.255880335

IUPAC Name

ethyl icosa-5,8,11,14,17-pentaenoate

Traditional Name

ethyl eicosapentaenoic acid

CAS Registry Number

Not Available

SMILES

CCOC(=O)CCCC=CCC=CCC=CCC=CCC=CCC

InChI Identifier

InChI=1S/C22H34O2/c1-3-5-6-7-8-9-10-11-12-13-14-15-16-17-18-19-20-21-22(23)24-4-2/h5-6,8-9,11-12,14-15,17-18H,3-4,7,10,13,16,19-21H2,1-2H3

InChI Key

SSQPWTVBQMWLSZ-UHFFFAOYSA-N

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as fatty acid esters. These are carboxylic ester derivatives of a fatty acid.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Fatty Acyls

Sub Class

Fatty acid esters

Direct Parent

Fatty acid esters

Alternative Parents

Substituents

Fatty acid ester
Carboxylic acid ester
Monocarboxylic acid or derivatives
Carboxylic acid derivative
Organic oxygen compound
Organic oxide
Hydrocarbon derivative
Organooxygen compound
Carbonyl group
Aliphatic acyclic compound

Molecular Framework

Aliphatic acyclic compounds

External Descriptors

Not Available

Ontology

Physiological effect

Not Available

Disposition

Biological location

Non-excretory biofluid

Biofluid or Excreta

Blood (PMID: 31557052)

Process

Not Available

Role

Not Available

Physical Properties

State

Not Available

Experimental Molecular Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Experimental Chromatographic Properties

Not Available

Predicted Molecular Properties

Property	Value	Source
logP	6.8	ALOGPS
logP	6.73	ChemAxon
logS	-6.5	ALOGPS
pKa (Strongest Basic)	-7	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	1	ChemAxon
Hydrogen Donor Count	0	ChemAxon
Polar Surface Area	26.3 Å²	ChemAxon
Rotatable Bond Count	15	ChemAxon
Refractivity	110.59 m³·mol⁻¹	ChemAxon
Polarizability	40.42 Å³	ChemAxon
Number of Rings	0	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

Predicted Chromatographic Properties

Predicted Collision Cross Sections

Predictor	Adduct Type	CCS Value (Å²)	Reference
DeepCCS	[M+H]+	178.069	30932474
DeepCCS	[M-H]-	175.711	30932474
DeepCCS	[M-2H]-	208.597	30932474
DeepCCS	[M+Na]+	184.163	30932474
AllCCS	[M+H]+	190.9	32859911
AllCCS	[M+H-H2O]+	188.1	32859911
AllCCS	[M+NH4]+	193.5	32859911
AllCCS	[M+Na]+	194.3	32859911
AllCCS	[M-H]-	187.6	32859911
AllCCS	[M+Na-2H]-	189.5	32859911
AllCCS	[M+HCOO]-	191.7	32859911

Predicted Kovats Retention Indices

Underivatized

Metabolite	SMILES	Kovats RI Value	Column Type	Reference
Eicosapentaenoic acid ethyl ester	CCOC(=O)CCCC=CCC=CCC=CCC=CCC=CCC	2953.5	Standard polar	33892256
Eicosapentaenoic acid ethyl ester	CCOC(=O)CCCC=CCC=CCC=CCC=CCC=CCC	2300.7	Standard non polar	33892256
Eicosapentaenoic acid ethyl ester	CCOC(=O)CCCC=CCC=CCC=CCC=CCC=CCC	2361.9	Semi standard non polar	33892256

Spectra

GC-MS Spectra

Spectrum Type	Description	Splash Key	Deposition Date	Source	View
Predicted GC-MS	Predicted GC-MS Spectrum - Eicosapentaenoic acid ethyl ester GC-MS (Non-derivatized) - 70eV, Positive	splash10-056r-4291000000-18f886cd2e21c8d674eb	2021-09-24	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - Eicosapentaenoic acid ethyl ester GC-MS (Non-derivatized) - 70eV, Positive	Not Available	2021-10-12	Wishart Lab	View Spectrum

MS/MS Spectra

Spectrum Type	Description	Splash Key	Deposition Date	Source	View
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - Eicosapentaenoic acid ethyl ester 10V, Positive-QTOF	splash10-001i-3259000000-fe24128a1e2918a071da	2021-10-12	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - Eicosapentaenoic acid ethyl ester 20V, Positive-QTOF	splash10-0540-7971000000-1e744aeb98753f57cb46	2021-10-12	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - Eicosapentaenoic acid ethyl ester 40V, Positive-QTOF	splash10-00lr-6910000000-60e082cfeb16521a6d49	2021-10-12	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - Eicosapentaenoic acid ethyl ester 10V, Negative-QTOF	splash10-004i-0019000000-f5738e4a74132a2c3d43	2021-10-12	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - Eicosapentaenoic acid ethyl ester 20V, Negative-QTOF	splash10-001i-1092000000-115577c350ccf9af3a58	2021-10-12	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - Eicosapentaenoic acid ethyl ester 40V, Negative-QTOF	splash10-052r-9380000000-3139bc0db38ab21fa593	2021-10-12	Wishart Lab	View Spectrum

Biological Properties

Cellular Locations

Not Available

Biospecimen Locations

Blood

Tissue Locations

Not Available

Pathways

Not Available

Name	SMPDB/PathBank	KEGG

Normal Concentrations

Biospecimen	Status	Value	Age	Sex	Condition	Reference	Details
Blood	Detected but not Quantified	Not Quantified	Not Specified	Not Specified	Normal	31557052	details

Abnormal Concentrations

Not Available

Associated Disorders and Diseases

Disease References

None

Associated OMIM IDs

None

External Links

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FooDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

3182

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

3298

PDB ID

Not Available

ChEBI ID

Not Available

Food Biomarker Ontology

Not Available

VMH ID

Not Available

MarkerDB ID

Not Available

Good Scents ID

Not Available

References

Synthesis Reference

Not Available

Material Safety Data Sheet (MSDS)

Not Available

General References

Barupal DK, Fiehn O: Generating the Blood Exposome Database Using a Comprehensive Text Mining and Database Fusion Approach. Environ Health Perspect. 2019 Sep;127(9):97008. doi: 10.1289/EHP4713. Epub 2019 Sep 26. [PubMed:31557052 ]

Showing metabocard for Eicosapentaenoic acid ethyl ester (HMDB0249402)

MOL for HMDB0249402 (Eicosapentaenoic acid ethyl ester)

3D MOL for HMDB0249402 (Eicosapentaenoic acid ethyl ester)

3D SDF for HMDB0249402 (Eicosapentaenoic acid ethyl ester)

3D-SDF for HMDB0249402 (Eicosapentaenoic acid ethyl ester)

PDB for HMDB0249402 (Eicosapentaenoic acid ethyl ester)

3D PDB for HMDB0249402 (Eicosapentaenoic acid ethyl ester)

SMILES for HMDB0249402 (Eicosapentaenoic acid ethyl ester)

INCHI for HMDB0249402 (Eicosapentaenoic acid ethyl ester)

Structure for HMDB0249402 (Eicosapentaenoic acid ethyl ester)

3D Structure for HMDB0249402 (Eicosapentaenoic acid ethyl ester)

Predicted Collision Cross Sections

Predicted Kovats Retention Indices

Underivatized

GC-MS Spectra

MS/MS Spectra