Record Information |
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Version | 5.0 |
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Status | Detected but not Quantified |
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Creation Date | 2021-09-11 07:13:25 UTC |
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Update Date | 2021-09-26 23:01:35 UTC |
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HMDB ID | HMDB0250240 |
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Secondary Accession Numbers | None |
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Metabolite Identification |
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Common Name | Cifostodine |
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Description | Cifostodine belongs to the class of organic compounds known as 2',3'-cyclic pyrimidine nucleotides. These are pyrimidine nucleotides in which the oxygen atoms linked to the C2 and C3 carbon atoms of the ribose moiety are both bonded the same phosphorus atom of the phosphate group. Based on a literature review very few articles have been published on Cifostodine. This compound has been identified in human blood as reported by (PMID: 31557052 ). Cifostodine is not a naturally occurring metabolite and is only found in those individuals exposed to this compound or its derivatives. Technically Cifostodine is part of the human exposome. The exposome can be defined as the collection of all the exposures of an individual in a lifetime and how those exposures relate to health. An individual's exposure begins before birth and includes insults from environmental and occupational sources. |
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Structure | NC1=NC(=O)N(C=C1)C1OC(CO)C2OP(O)(=O)OC12 InChI=1S/C9H12N3O7P/c10-5-1-2-12(9(14)11-5)8-7-6(4(3-13)17-8)18-20(15,16)19-7/h1-2,4,6-8,13H,3H2,(H,15,16)(H2,10,11,14) |
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Synonyms | Not Available |
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Chemical Formula | C9H12N3O7P |
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Average Molecular Weight | 305.183 |
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Monoisotopic Molecular Weight | 305.041286736 |
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IUPAC Name | 4-amino-1-[2-hydroxy-6-(hydroxymethyl)-2-oxo-tetrahydro-2H-2lambda5-furo[3,4-d][1,3,2]dioxaphosphol-4-yl]-1,2-dihydropyrimidin-2-one |
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Traditional Name | 4-amino-1-[2-hydroxy-6-(hydroxymethyl)-2-oxo-tetrahydro-2lambda5-furo[3,4-d][1,3,2]dioxaphosphol-4-yl]pyrimidin-2-one |
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CAS Registry Number | Not Available |
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SMILES | NC1=NC(=O)N(C=C1)C1OC(CO)C2OP(O)(=O)OC12 |
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InChI Identifier | InChI=1S/C9H12N3O7P/c10-5-1-2-12(9(14)11-5)8-7-6(4(3-13)17-8)18-20(15,16)19-7/h1-2,4,6-8,13H,3H2,(H,15,16)(H2,10,11,14) |
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InChI Key | NMPZCCZXCOMSDQ-UHFFFAOYSA-N |
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Chemical Taxonomy |
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Description | Belongs to the class of organic compounds known as 2',3'-cyclic pyrimidine nucleotides. These are pyrimidine nucleotides in which the oxygen atoms linked to the C2 and C3 carbon atoms of the ribose moiety are both bonded the same phosphorus atom of the phosphate group. |
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Kingdom | Organic compounds |
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Super Class | Nucleosides, nucleotides, and analogues |
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Class | Pyrimidine nucleotides |
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Sub Class | Cyclic pyrimidine nucleotides |
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Direct Parent | 2',3'-cyclic pyrimidine nucleotides |
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Alternative Parents | |
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Substituents | - 2',3'-cyclic pyrimidine ribonucleotide
- Ribonucleoside 3'-phosphate
- Aminopyrimidine
- Pyrimidone
- Hydropyrimidine
- Monosaccharide
- Organic phosphoric acid derivative
- Pyrimidine
- Imidolactam
- Heteroaromatic compound
- Tetrahydrofuran
- 1,3_dioxaphospholane
- Organoheterocyclic compound
- Oxacycle
- Azacycle
- Organic oxide
- Primary alcohol
- Organooxygen compound
- Organonitrogen compound
- Amine
- Alcohol
- Organic nitrogen compound
- Primary amine
- Organic oxygen compound
- Organopnictogen compound
- Hydrocarbon derivative
- Aromatic heteropolycyclic compound
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Molecular Framework | Aromatic heteropolycyclic compounds |
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External Descriptors | Not Available |
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Ontology |
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Physiological effect | Not Available |
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Disposition | |
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Process | Not Available |
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Role | Not Available |
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Physical Properties |
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State | Not Available |
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Experimental Molecular Properties | Property | Value | Reference |
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Melting Point | Not Available | Not Available | Boiling Point | Not Available | Not Available | Water Solubility | Not Available | Not Available | LogP | Not Available | Not Available |
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Experimental Chromatographic Properties | Not Available |
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Predicted Molecular Properties | | Show more...
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Predicted Chromatographic Properties | Predicted Collision Cross SectionsPredicted Kovats Retention IndicesUnderivatizedDerivatizedDerivative Name / Structure | SMILES | Kovats RI Value | Column Type | Reference |
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Cifostodine,2TMS,isomer #1 | C[Si](C)(C)OCC1OC(N2C=CC(N)=NC2=O)C2OP(=O)(O[Si](C)(C)C)OC12 | 2819.2 | Semi standard non polar | 33892256 | Cifostodine,2TMS,isomer #1 | C[Si](C)(C)OCC1OC(N2C=CC(N)=NC2=O)C2OP(=O)(O[Si](C)(C)C)OC12 | 2879.1 | Standard non polar | 33892256 | Cifostodine,2TMS,isomer #1 | C[Si](C)(C)OCC1OC(N2C=CC(N)=NC2=O)C2OP(=O)(O[Si](C)(C)C)OC12 | 3857.8 | Standard polar | 33892256 | Cifostodine,2TMS,isomer #2 | C[Si](C)(C)NC1=NC(=O)N(C2OC(CO[Si](C)(C)C)C3OP(=O)(O)OC32)C=C1 | 2889.7 | Semi standard non polar | 33892256 | Cifostodine,2TMS,isomer #2 | C[Si](C)(C)NC1=NC(=O)N(C2OC(CO[Si](C)(C)C)C3OP(=O)(O)OC32)C=C1 | 2851.4 | Standard non polar | 33892256 | Cifostodine,2TMS,isomer #2 | C[Si](C)(C)NC1=NC(=O)N(C2OC(CO[Si](C)(C)C)C3OP(=O)(O)OC32)C=C1 | 4049.7 | Standard polar | 33892256 | Cifostodine,2TMS,isomer #3 | C[Si](C)(C)NC1=NC(=O)N(C2OC(CO)C3OP(=O)(O[Si](C)(C)C)OC32)C=C1 | 2884.1 | Semi standard non polar | 33892256 | Cifostodine,2TMS,isomer #3 | C[Si](C)(C)NC1=NC(=O)N(C2OC(CO)C3OP(=O)(O[Si](C)(C)C)OC32)C=C1 | 2873.3 | Standard non polar | 33892256 | Cifostodine,2TMS,isomer #3 | C[Si](C)(C)NC1=NC(=O)N(C2OC(CO)C3OP(=O)(O[Si](C)(C)C)OC32)C=C1 | 3879.4 | Standard polar | 33892256 | Cifostodine,2TMS,isomer #4 | C[Si](C)(C)N(C1=NC(=O)N(C2OC(CO)C3OP(=O)(O)OC32)C=C1)[Si](C)(C)C | 2859.0 | Semi standard non polar | 33892256 | Cifostodine,2TMS,isomer #4 | C[Si](C)(C)N(C1=NC(=O)N(C2OC(CO)C3OP(=O)(O)OC32)C=C1)[Si](C)(C)C | 2939.1 | Standard non polar | 33892256 | Cifostodine,2TMS,isomer #4 | C[Si](C)(C)N(C1=NC(=O)N(C2OC(CO)C3OP(=O)(O)OC32)C=C1)[Si](C)(C)C | 4113.9 | Standard polar | 33892256 | Cifostodine,3TMS,isomer #1 | C[Si](C)(C)NC1=NC(=O)N(C2OC(CO[Si](C)(C)C)C3OP(=O)(O[Si](C)(C)C)OC32)C=C1 | 2900.9 | Semi standard non polar | 33892256 | Cifostodine,3TMS,isomer #1 | C[Si](C)(C)NC1=NC(=O)N(C2OC(CO[Si](C)(C)C)C3OP(=O)(O[Si](C)(C)C)OC32)C=C1 | 2934.0 | Standard non polar | 33892256 | Cifostodine,3TMS,isomer #1 | C[Si](C)(C)NC1=NC(=O)N(C2OC(CO[Si](C)(C)C)C3OP(=O)(O[Si](C)(C)C)OC32)C=C1 | 3608.1 | Standard polar | 33892256 | Cifostodine,3TMS,isomer #2 | C[Si](C)(C)OCC1OC(N2C=CC(N([Si](C)(C)C)[Si](C)(C)C)=NC2=O)C2OP(=O)(O)OC12 | 2850.0 | Semi standard non polar | 33892256 | Cifostodine,3TMS,isomer #2 | C[Si](C)(C)OCC1OC(N2C=CC(N([Si](C)(C)C)[Si](C)(C)C)=NC2=O)C2OP(=O)(O)OC12 | 2979.9 | Standard non polar | 33892256 | Cifostodine,3TMS,isomer #2 | C[Si](C)(C)OCC1OC(N2C=CC(N([Si](C)(C)C)[Si](C)(C)C)=NC2=O)C2OP(=O)(O)OC12 | 3752.8 | Standard polar | 33892256 | Cifostodine,3TMS,isomer #3 | C[Si](C)(C)OP1(=O)OC2C(CO)OC(N3C=CC(N([Si](C)(C)C)[Si](C)(C)C)=NC3=O)C2O1 | 2871.0 | Semi standard non polar | 33892256 | Cifostodine,3TMS,isomer #3 | C[Si](C)(C)OP1(=O)OC2C(CO)OC(N3C=CC(N([Si](C)(C)C)[Si](C)(C)C)=NC3=O)C2O1 | 3013.2 | Standard non polar | 33892256 | Cifostodine,3TMS,isomer #3 | C[Si](C)(C)OP1(=O)OC2C(CO)OC(N3C=CC(N([Si](C)(C)C)[Si](C)(C)C)=NC3=O)C2O1 | 3585.4 | Standard polar | 33892256 | Cifostodine,4TMS,isomer #1 | C[Si](C)(C)OCC1OC(N2C=CC(N([Si](C)(C)C)[Si](C)(C)C)=NC2=O)C2OP(=O)(O[Si](C)(C)C)OC12 | 2884.2 | Semi standard non polar | 33892256 | Cifostodine,4TMS,isomer #1 | C[Si](C)(C)OCC1OC(N2C=CC(N([Si](C)(C)C)[Si](C)(C)C)=NC2=O)C2OP(=O)(O[Si](C)(C)C)OC12 | 3030.3 | Standard non polar | 33892256 | Cifostodine,4TMS,isomer #1 | C[Si](C)(C)OCC1OC(N2C=CC(N([Si](C)(C)C)[Si](C)(C)C)=NC2=O)C2OP(=O)(O[Si](C)(C)C)OC12 | 3357.6 | Standard polar | 33892256 | Cifostodine,2TBDMS,isomer #1 | CC(C)(C)[Si](C)(C)OCC1OC(N2C=CC(N)=NC2=O)C2OP(=O)(O[Si](C)(C)C(C)(C)C)OC12 | 3234.4 | Semi standard non polar | 33892256 | Cifostodine,2TBDMS,isomer #1 | CC(C)(C)[Si](C)(C)OCC1OC(N2C=CC(N)=NC2=O)C2OP(=O)(O[Si](C)(C)C(C)(C)C)OC12 | 3330.2 | Standard non polar | 33892256 | Cifostodine,2TBDMS,isomer #1 | CC(C)(C)[Si](C)(C)OCC1OC(N2C=CC(N)=NC2=O)C2OP(=O)(O[Si](C)(C)C(C)(C)C)OC12 | 4010.9 | Standard polar | 33892256 | Cifostodine,2TBDMS,isomer #2 | CC(C)(C)[Si](C)(C)NC1=NC(=O)N(C2OC(CO[Si](C)(C)C(C)(C)C)C3OP(=O)(O)OC32)C=C1 | 3318.4 | Semi standard non polar | 33892256 | Cifostodine,2TBDMS,isomer #2 | CC(C)(C)[Si](C)(C)NC1=NC(=O)N(C2OC(CO[Si](C)(C)C(C)(C)C)C3OP(=O)(O)OC32)C=C1 | 3339.3 | Standard non polar | 33892256 | Cifostodine,2TBDMS,isomer #2 | CC(C)(C)[Si](C)(C)NC1=NC(=O)N(C2OC(CO[Si](C)(C)C(C)(C)C)C3OP(=O)(O)OC32)C=C1 | 4173.4 | Standard polar | 33892256 | Cifostodine,2TBDMS,isomer #3 | CC(C)(C)[Si](C)(C)NC1=NC(=O)N(C2OC(CO)C3OP(=O)(O[Si](C)(C)C(C)(C)C)OC32)C=C1 | 3341.9 | Semi standard non polar | 33892256 | Cifostodine,2TBDMS,isomer #3 | CC(C)(C)[Si](C)(C)NC1=NC(=O)N(C2OC(CO)C3OP(=O)(O[Si](C)(C)C(C)(C)C)OC32)C=C1 | 3330.3 | Standard non polar | 33892256 | Cifostodine,2TBDMS,isomer #3 | CC(C)(C)[Si](C)(C)NC1=NC(=O)N(C2OC(CO)C3OP(=O)(O[Si](C)(C)C(C)(C)C)OC32)C=C1 | 4042.6 | Standard polar | 33892256 | Cifostodine,2TBDMS,isomer #4 | CC(C)(C)[Si](C)(C)N(C1=NC(=O)N(C2OC(CO)C3OP(=O)(O)OC32)C=C1)[Si](C)(C)C(C)(C)C | 3268.4 | Semi standard non polar | 33892256 | Cifostodine,2TBDMS,isomer #4 | CC(C)(C)[Si](C)(C)N(C1=NC(=O)N(C2OC(CO)C3OP(=O)(O)OC32)C=C1)[Si](C)(C)C(C)(C)C | 3368.3 | Standard non polar | 33892256 | Cifostodine,2TBDMS,isomer #4 | CC(C)(C)[Si](C)(C)N(C1=NC(=O)N(C2OC(CO)C3OP(=O)(O)OC32)C=C1)[Si](C)(C)C(C)(C)C | 4140.8 | Standard polar | 33892256 | Cifostodine,3TBDMS,isomer #1 | CC(C)(C)[Si](C)(C)NC1=NC(=O)N(C2OC(CO[Si](C)(C)C(C)(C)C)C3OP(=O)(O[Si](C)(C)C(C)(C)C)OC32)C=C1 | 3532.4 | Semi standard non polar | 33892256 | Cifostodine,3TBDMS,isomer #1 | CC(C)(C)[Si](C)(C)NC1=NC(=O)N(C2OC(CO[Si](C)(C)C(C)(C)C)C3OP(=O)(O[Si](C)(C)C(C)(C)C)OC32)C=C1 | 3567.8 | Standard non polar | 33892256 | Cifostodine,3TBDMS,isomer #1 | CC(C)(C)[Si](C)(C)NC1=NC(=O)N(C2OC(CO[Si](C)(C)C(C)(C)C)C3OP(=O)(O[Si](C)(C)C(C)(C)C)OC32)C=C1 | 3885.1 | Standard polar | 33892256 | Cifostodine,3TBDMS,isomer #2 | CC(C)(C)[Si](C)(C)OCC1OC(N2C=CC(N([Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C)=NC2=O)C2OP(=O)(O)OC12 | 3475.6 | Semi standard non polar | 33892256 | Cifostodine,3TBDMS,isomer #2 | CC(C)(C)[Si](C)(C)OCC1OC(N2C=CC(N([Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C)=NC2=O)C2OP(=O)(O)OC12 | 3625.1 | Standard non polar | 33892256 | Cifostodine,3TBDMS,isomer #2 | CC(C)(C)[Si](C)(C)OCC1OC(N2C=CC(N([Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C)=NC2=O)C2OP(=O)(O)OC12 | 3926.0 | Standard polar | 33892256 | Cifostodine,3TBDMS,isomer #3 | CC(C)(C)[Si](C)(C)OP1(=O)OC2C(CO)OC(N3C=CC(N([Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C)=NC3=O)C2O1 | 3469.2 | Semi standard non polar | 33892256 | Cifostodine,3TBDMS,isomer #3 | CC(C)(C)[Si](C)(C)OP1(=O)OC2C(CO)OC(N3C=CC(N([Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C)=NC3=O)C2O1 | 3618.0 | Standard non polar | 33892256 | Cifostodine,3TBDMS,isomer #3 | CC(C)(C)[Si](C)(C)OP1(=O)OC2C(CO)OC(N3C=CC(N([Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C)=NC3=O)C2O1 | 3789.1 | Standard polar | 33892256 | Cifostodine,4TBDMS,isomer #1 | CC(C)(C)[Si](C)(C)OCC1OC(N2C=CC(N([Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C)=NC2=O)C2OP(=O)(O[Si](C)(C)C(C)(C)C)OC12 | 3632.8 | Semi standard non polar | 33892256 | Cifostodine,4TBDMS,isomer #1 | CC(C)(C)[Si](C)(C)OCC1OC(N2C=CC(N([Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C)=NC2=O)C2OP(=O)(O[Si](C)(C)C(C)(C)C)OC12 | 3831.5 | Standard non polar | 33892256 | Cifostodine,4TBDMS,isomer #1 | CC(C)(C)[Si](C)(C)OCC1OC(N2C=CC(N([Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C)=NC2=O)C2OP(=O)(O[Si](C)(C)C(C)(C)C)OC12 | 3651.8 | Standard polar | 33892256 |
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