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Record Information

Version

5.0

Status

Detected but not Quantified

Creation Date

2021-09-11 07:19:41 UTC

Update Date

2021-09-26 23:01:44 UTC

HMDB ID

HMDB0250323

Secondary Accession Numbers

None

Metabolite Identification

Common Name

Clinafloxacin

Description

CLINAFLOXACIN belongs to the class of organic compounds known as quinoline carboxylic acids. These are quinolines in which the quinoline ring system is substituted by a carboxyl group at one or more positions. Based on a literature review a significant number of articles have been published on CLINAFLOXACIN. This compound has been identified in human blood as reported by (PMID: 31557052 ). Clinafloxacin is not a naturally occurring metabolite and is only found in those individuals exposed to this compound or its derivatives. Technically Clinafloxacin is part of the human exposome. The exposome can be defined as the collection of all the exposures of an individual in a lifetime and how those exposures relate to health. An individual's exposure begins before birth and includes insults from environmental and occupational sources.

Structure

MOL 3D MOL SDF 3D SDF PDB 3D PDB SMILES InChI

HMDB0250323
     RDKit          3D
Clinafloxacin
 42 45  0  0  0  0  0  0  0  0999 V2000
   -5.7476   -0.6772   -0.7532 N   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6546    0.2741   -0.5082 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6218    0.6227    0.9648 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1617    1.0180    1.1491 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4714    0.0233    0.3570 N   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1624   -0.5053    0.5373 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8893   -1.6139    1.3004 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9234   -2.2425    1.9186 F   0  0  0  0  0  0  0  0  0  0  0  0
    0.3892   -2.1012    1.4553 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4435   -1.4446    0.8142 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7297   -1.9233    0.9495 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9078   -2.9444    1.6633 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.7466   -1.2732    0.3076 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.1044   -1.7892    0.4570 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.3471   -2.8055    1.1556 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.1940   -1.1764   -0.1698 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.4349   -0.1799   -0.4355 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1843    0.3300   -0.5978 N   0  0  0  0  0  0  0  0  0  0  0  0
    2.0292    1.5215   -1.4079 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0702    2.8892   -0.8739 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3135    2.3719   -1.4872 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1862   -0.3105    0.0311 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0997    0.1472   -0.1025 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4264    1.5345   -1.1029 Cl  0  0  0  0  0  0  0  0  0  0  0  0
   -3.3422   -0.4061   -0.7304 C   0  0  0  0  0  0  0  0  0  0  0  0
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   -4.7661    1.1672   -1.1334 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2884    1.4939    1.1263 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8695   -0.2564    1.5630 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8944    0.9659    2.2230 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9941    2.0376    0.7991 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.6325   -2.9696    2.0480 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.0136   -0.9989    0.4134 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.2545    0.3070   -0.9441 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.6848    1.2633   -2.4358 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.5616    3.6854   -1.4331 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9754    2.9974    0.2238 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.1361    2.2341   -0.7962 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.6090    2.7670   -2.4707 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8942    0.0012   -1.6591 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3947   -1.4934   -0.7100 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
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M  END

  Mrv1533004251517102D          

 25 28  0  0  0  0            999 V2000
    1.8414   -3.1895    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0164   -3.1895    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289   -2.4750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289   -1.6500    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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    1.4289    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289    0.8250    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5724   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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    2.1434   -1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579   -2.4750    0.0000 Cl  0  0  0  0  0  0  0  0  0  0  0  0
    4.2868   -1.6500    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    5.0405   -1.3144    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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    5.5156   -3.3957    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    4.2868   -0.0000    0.0000 F   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7145   -0.4125    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000    0.8250    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  1  3  1  0  0  0  0
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 11 22  1  0  0  0  0
  6 23  1  0  0  0  0
 23 24  2  0  0  0  0
 23 25  1  0  0  0  0
M  END
> <DATABASE_ID>
HMDB0250323

> <DATABASE_NAME>
hmdb

> <SMILES>
NC1CCN(C1)C1=C(F)C=C2C(=O)C(=CN(C3CC3)C2=C1Cl)C(O)=O

> <INCHI_IDENTIFIER>
InChI=1S/C17H17ClFN3O3/c18-13-14-10(5-12(19)15(13)21-4-3-8(20)6-21)16(23)11(17(24)25)7-22(14)9-1-2-9/h5,7-9H,1-4,6,20H2,(H,24,25)

> <INCHI_KEY>
QGPKADBNRMWEQR-UHFFFAOYSA-N

> <FORMULA>
C17H17ClFN3O3

> <MOLECULAR_WEIGHT>
365.79

> <EXACT_MASS>
365.0942473

> <JCHEM_ACCEPTOR_COUNT>
6

> <JCHEM_ATOM_COUNT>
42

> <JCHEM_AVERAGE_POLARIZABILITY>
35.38200395224071

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
2

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
7-(3-aminopyrrolidin-1-yl)-8-chloro-1-cyclopropyl-6-fluoro-4-oxo-1,4-dihydroquinoline-3-carboxylic acid

> <ALOGPS_LOGP>
0.36

> <JCHEM_LOGP>
-0.4208892589288188

> <ALOGPS_LOGS>
-2.91

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
4

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA_STRONGEST_ACIDIC>
5.643831484716042

> <JCHEM_PKA_STRONGEST_BASIC>
9.629839821310142

> <JCHEM_POLAR_SURFACE_AREA>
86.87000000000002

> <JCHEM_REFRACTIVITY>
92.50519999999999

> <JCHEM_ROTATABLE_BOND_COUNT>
3

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
4.45e-01 g/l

> <JCHEM_TRADITIONAL_IUPAC>
clinafloxacin

> <JCHEM_VEBER_RULE>
0

$$$$

HMDB0250323
     RDKit          3D
Clinafloxacin
 42 45  0  0  0  0  0  0  0  0999 V2000
   -5.7476   -0.6772   -0.7532 N   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6546    0.2741   -0.5082 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6218    0.6227    0.9648 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1617    1.0180    1.1491 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4714    0.0233    0.3570 N   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1624   -0.5053    0.5373 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8893   -1.6139    1.3004 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9234   -2.2425    1.9186 F   0  0  0  0  0  0  0  0  0  0  0  0
    0.3892   -2.1012    1.4553 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4435   -1.4446    0.8142 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7297   -1.9233    0.9495 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9078   -2.9444    1.6633 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.7466   -1.2732    0.3076 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.1044   -1.7892    0.4570 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.3471   -2.8055    1.1556 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.1940   -1.1764   -0.1698 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.4349   -0.1799   -0.4355 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1843    0.3300   -0.5978 N   0  0  0  0  0  0  0  0  0  0  0  0
    2.0292    1.5215   -1.4079 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0702    2.8892   -0.8739 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3135    2.3719   -1.4872 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1862   -0.3105    0.0311 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0997    0.1472   -0.1025 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4264    1.5345   -1.1029 Cl  0  0  0  0  0  0  0  0  0  0  0  0
   -3.3422   -0.4061   -0.7304 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6748   -1.4334   -0.0181 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6719   -1.1077   -1.6874 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7661    1.1672   -1.1334 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2884    1.4939    1.1263 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8695   -0.2564    1.5630 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8944    0.9659    2.2230 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9941    2.0376    0.7991 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.6325   -2.9696    2.0480 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.0136   -0.9989    0.4134 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.2545    0.3070   -0.9441 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.6848    1.2633   -2.4358 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.5616    3.6854   -1.4331 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9754    2.9974    0.2238 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.1361    2.2341   -0.7962 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.6090    2.7670   -2.4707 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8942    0.0012   -1.6591 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3947   -1.4934   -0.7100 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
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  6  7  2  0
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  7  9  1  0
  9 10  2  0
 10 11  1  0
 11 12  2  0
 11 13  1  0
 13 14  1  0
 14 15  2  0
 14 16  1  0
 13 17  2  0
 17 18  1  0
 18 19  1  0
 19 20  1  0
 20 21  1  0
 18 22  1  0
 22 23  2  0
 23 24  1  0
  5 25  1  0
 25  2  1  0
 23  6  1  0
 22 10  1  0
 21 19  1  0
  1 26  1  0
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  9 33  1  0
 16 34  1  0
 17 35  1  0
 19 36  1  0
 20 37  1  0
 20 38  1  0
 21 39  1  0
 21 40  1  0
 25 41  1  0
 25 42  1  0
M  END

HEADER    PROTEIN                                 25-APR-15   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   25-APR-15         0                                  
HETATM    1  C   UNK     0       3.437  -5.954   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       1.897  -5.954   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       2.667  -4.620   0.000  0.00  0.00           C+0
HETATM    4  N   UNK     0       2.667  -3.080   0.000  0.00  0.00           N+0
HETATM    5  C   UNK     0       1.334  -2.310   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       1.334  -0.770   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       2.667   0.000   0.000  0.00  0.00           C+0
HETATM    8  O   UNK     0       2.667   1.540   0.000  0.00  0.00           O+0
HETATM    9  C   UNK     0       4.001  -0.770   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       5.335   0.000   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       6.668  -0.770   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       6.668  -2.310   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       5.335  -3.080   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       4.001  -2.310   0.000  0.00  0.00           C+0
HETATM   15 Cl   UNK     0       5.335  -4.620   0.000  0.00  0.00          Cl+0
HETATM   16  N   UNK     0       8.002  -3.080   0.000  0.00  0.00           N+0
HETATM   17  C   UNK     0       9.409  -2.454   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0      10.439  -3.598   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0       9.669  -4.932   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0       8.163  -4.612   0.000  0.00  0.00           C+0
HETATM   21  N   UNK     0      10.296  -6.339   0.000  0.00  0.00           N+0
HETATM   22  F   UNK     0       8.002  -0.000   0.000  0.00  0.00           F+0
HETATM   23  C   UNK     0       0.000   0.000   0.000  0.00  0.00           C+0
HETATM   24  O   UNK     0      -1.334  -0.770   0.000  0.00  0.00           O+0
HETATM   25  O   UNK     0       0.000   1.540   0.000  0.00  0.00           O+0
CONECT    1    2    3                                                       
CONECT    2    1    3                                                       
CONECT    3    2    1    4                                                  
CONECT    4    3    5   14                                                  
CONECT    5    4    6                                                       
CONECT    6    5    7   23                                                  
CONECT    7    6    8    9                                                  
CONECT    8    7                                                            
CONECT    9    7   10   14                                                  
CONECT   10    9   11                                                       
CONECT   11   10   12   22                                                  
CONECT   12   11   13   16                                                  
CONECT   13   12   14   15                                                  
CONECT   14   13    9    4                                                  
CONECT   15   13                                                            
CONECT   16   12   17   20                                                  
CONECT   17   16   18                                                       
CONECT   18   17   19                                                       
CONECT   19   18   20   21                                                  
CONECT   20   19   16                                                       
CONECT   21   19                                                            
CONECT   22   11                                                            
CONECT   23    6   24   25                                                  
CONECT   24   23                                                            
CONECT   25   23                                                            
MASTER        0    0    0    0    0    0    0    0   25    0   56    0
END

COMPND    HMDB0250323
HETATM    1  N1  UNL     1      -5.748  -0.677  -0.753  1.00  0.00           N  
HETATM    2  C1  UNL     1      -4.655   0.274  -0.508  1.00  0.00           C  
HETATM    3  C2  UNL     1      -4.622   0.623   0.965  1.00  0.00           C  
HETATM    4  C3  UNL     1      -3.162   1.018   1.149  1.00  0.00           C  
HETATM    5  N2  UNL     1      -2.471   0.023   0.357  1.00  0.00           N  
HETATM    6  C4  UNL     1      -1.162  -0.505   0.537  1.00  0.00           C  
HETATM    7  C5  UNL     1      -0.889  -1.614   1.300  1.00  0.00           C  
HETATM    8  F1  UNL     1      -1.923  -2.242   1.919  1.00  0.00           F  
HETATM    9  C6  UNL     1       0.389  -2.101   1.455  1.00  0.00           C  
HETATM   10  C7  UNL     1       1.444  -1.445   0.814  1.00  0.00           C  
HETATM   11  C8  UNL     1       2.730  -1.923   0.949  1.00  0.00           C  
HETATM   12  O1  UNL     1       2.908  -2.944   1.663  1.00  0.00           O  
HETATM   13  C9  UNL     1       3.747  -1.273   0.308  1.00  0.00           C  
HETATM   14  C10 UNL     1       5.104  -1.789   0.457  1.00  0.00           C  
HETATM   15  O2  UNL     1       5.347  -2.805   1.156  1.00  0.00           O  
HETATM   16  O3  UNL     1       6.194  -1.176  -0.170  1.00  0.00           O  
HETATM   17  C11 UNL     1       3.435  -0.180  -0.436  1.00  0.00           C  
HETATM   18  N3  UNL     1       2.184   0.330  -0.598  1.00  0.00           N  
HETATM   19  C12 UNL     1       2.029   1.521  -1.408  1.00  0.00           C  
HETATM   20  C13 UNL     1       2.070   2.889  -0.874  1.00  0.00           C  
HETATM   21  C14 UNL     1       3.313   2.372  -1.487  1.00  0.00           C  
HETATM   22  C15 UNL     1       1.186  -0.310   0.031  1.00  0.00           C  
HETATM   23  C16 UNL     1      -0.100   0.147  -0.102  1.00  0.00           C  
HETATM   24 CL1  UNL     1      -0.426   1.535  -1.103  1.00  0.00          CL  
HETATM   25  C17 UNL     1      -3.342  -0.406  -0.730  1.00  0.00           C  
HETATM   26  H1  UNL     1      -5.675  -1.433  -0.018  1.00  0.00           H  
HETATM   27  H2  UNL     1      -5.672  -1.108  -1.687  1.00  0.00           H  
HETATM   28  H3  UNL     1      -4.766   1.167  -1.133  1.00  0.00           H  
HETATM   29  H4  UNL     1      -5.288   1.494   1.126  1.00  0.00           H  
HETATM   30  H5  UNL     1      -4.869  -0.256   1.563  1.00  0.00           H  
HETATM   31  H6  UNL     1      -2.894   0.966   2.223  1.00  0.00           H  
HETATM   32  H7  UNL     1      -2.994   2.038   0.799  1.00  0.00           H  
HETATM   33  H8  UNL     1       0.633  -2.970   2.048  1.00  0.00           H  
HETATM   34  H9  UNL     1       7.014  -0.999   0.413  1.00  0.00           H  
HETATM   35  H10 UNL     1       4.254   0.307  -0.944  1.00  0.00           H  
HETATM   36  H11 UNL     1       1.685   1.263  -2.436  1.00  0.00           H  
HETATM   37  H12 UNL     1       1.562   3.685  -1.433  1.00  0.00           H  
HETATM   38  H13 UNL     1       1.975   2.997   0.224  1.00  0.00           H  
HETATM   39  H14 UNL     1       4.136   2.234  -0.796  1.00  0.00           H  
HETATM   40  H15 UNL     1       3.609   2.767  -2.471  1.00  0.00           H  
HETATM   41  H16 UNL     1      -2.894   0.001  -1.659  1.00  0.00           H  
HETATM   42  H17 UNL     1      -3.395  -1.493  -0.710  1.00  0.00           H  
CONECT    1    2   26   27
CONECT    2    3   25   28
CONECT    3    4   29   30
CONECT    4    5   31   32
CONECT    5    6   25
CONECT    6    7    7   23
CONECT    7    8    9
CONECT    9   10   10   33
CONECT   10   11   22
CONECT   11   12   12   13
CONECT   13   14   17   17
CONECT   14   15   15   16
CONECT   16   34
CONECT   17   18   35
CONECT   18   19   22
CONECT   19   20   21   36
CONECT   20   21   37   38
CONECT   21   39   40
CONECT   22   23   23
CONECT   23   24
CONECT   25   41   42
END

HMDB0250323
     RDKit          3D
Clinafloxacin
 42 45  0  0  0  0  0  0  0  0999 V2000
   -5.7476   -0.6772   -0.7532 N   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6546    0.2741   -0.5082 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6218    0.6227    0.9648 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1617    1.0180    1.1491 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4714    0.0233    0.3570 N   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1624   -0.5053    0.5373 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8893   -1.6139    1.3004 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9234   -2.2425    1.9186 F   0  0  0  0  0  0  0  0  0  0  0  0
    0.3892   -2.1012    1.4553 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4435   -1.4446    0.8142 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7297   -1.9233    0.9495 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9078   -2.9444    1.6633 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.7466   -1.2732    0.3076 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.1044   -1.7892    0.4570 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.3471   -2.8055    1.1556 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.1940   -1.1764   -0.1698 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.4349   -0.1799   -0.4355 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1843    0.3300   -0.5978 N   0  0  0  0  0  0  0  0  0  0  0  0
    2.0292    1.5215   -1.4079 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0702    2.8892   -0.8739 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3135    2.3719   -1.4872 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1862   -0.3105    0.0311 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0997    0.1472   -0.1025 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4264    1.5345   -1.1029 Cl  0  0  0  0  0  0  0  0  0  0  0  0
   -3.3422   -0.4061   -0.7304 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6748   -1.4334   -0.0181 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6719   -1.1077   -1.6874 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7661    1.1672   -1.1334 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2884    1.4939    1.1263 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8695   -0.2564    1.5630 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8944    0.9659    2.2230 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9941    2.0376    0.7991 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.6325   -2.9696    2.0480 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.0136   -0.9989    0.4134 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.2545    0.3070   -0.9441 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.6848    1.2633   -2.4358 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.5616    3.6854   -1.4331 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9754    2.9974    0.2238 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.1361    2.2341   -0.7962 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.6090    2.7670   -2.4707 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8942    0.0012   -1.6591 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3947   -1.4934   -0.7100 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  4  5  1  0
  5  6  1  0
  6  7  2  0
  7  8  1  0
  7  9  1  0
  9 10  2  0
 10 11  1  0
 11 12  2  0
 11 13  1  0
 13 14  1  0
 14 15  2  0
 14 16  1  0
 13 17  2  0
 17 18  1  0
 18 19  1  0
 19 20  1  0
 20 21  1  0
 18 22  1  0
 22 23  2  0
 23 24  1  0
  5 25  1  0
 25  2  1  0
 23  6  1  0
 22 10  1  0
 21 19  1  0
  1 26  1  0
  1 27  1  0
  2 28  1  0
  3 29  1  0
  3 30  1  0
  4 31  1  0
  4 32  1  0
  9 33  1  0
 16 34  1  0
 17 35  1  0
 19 36  1  0
 20 37  1  0
 20 38  1  0
 21 39  1  0
 21 40  1  0
 25 41  1  0
 25 42  1  0
M  END

View in JSmol View Stereo Labels

Synonyms

Value	Source
7-(3-Amino-1-pyrrolidinyl)-8-chloro-1-cyclopropyl-6-fluoro-1,4-dihydro-4-oxo-3-quinolinecarboxylic acid	MeSH
7-(3-Aminopyrrolidin-1-yl)-8-chloro-1-cyclopropyl-6-fluoro-4-oxo-1,4-dihydroquinoline-3-carboxylate	Generator

Chemical Formula

C₁₇H₁₇ClFN₃O₃

Average Molecular Weight

365.79

Monoisotopic Molecular Weight

365.0942473

IUPAC Name

7-(3-aminopyrrolidin-1-yl)-8-chloro-1-cyclopropyl-6-fluoro-4-oxo-1,4-dihydroquinoline-3-carboxylic acid

Traditional Name

clinafloxacin

CAS Registry Number

Not Available

SMILES

NC1CCN(C1)C1=C(F)C=C2C(=O)C(=CN(C3CC3)C2=C1Cl)C(O)=O

InChI Identifier

InChI=1S/C17H17ClFN3O3/c18-13-14-10(5-12(19)15(13)21-4-3-8(20)6-21)16(23)11(17(24)25)7-22(14)9-1-2-9/h5,7-9H,1-4,6,20H2,(H,24,25)

InChI Key

QGPKADBNRMWEQR-UHFFFAOYSA-N

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as quinoline carboxylic acids. These are quinolines in which the quinoline ring system is substituted by a carboxyl group at one or more positions.

Kingdom

Organic compounds

Super Class

Organoheterocyclic compounds

Class

Quinolines and derivatives

Sub Class

Quinoline carboxylic acids

Direct Parent

Quinoline carboxylic acids

Alternative Parents

Substituents

Quinoline-3-carboxylic acid
Fluoroquinolone
Aminoquinoline
Dihydroquinolone
Haloquinoline
Chloroquinoline
Dihydroquinoline
Pyridine carboxylic acid
Pyridine carboxylic acid or derivatives
Tertiary aliphatic/aromatic amine
Dialkylarylamine
Aryl halide
Aryl fluoride
Aryl chloride
Pyridine
Benzenoid
Pyrrolidine
Heteroaromatic compound
Vinylogous amide
Amino acid or derivatives
Amino acid
Tertiary amine
Monocarboxylic acid or derivatives
Azacycle
Carboxylic acid derivative
Carboxylic acid
Hydrocarbon derivative
Organohalogen compound
Primary aliphatic amine
Organopnictogen compound
Amine
Organic oxygen compound
Organochloride
Organofluoride
Organonitrogen compound
Organooxygen compound
Primary amine
Organic nitrogen compound
Organic oxide
Aromatic heteropolycyclic compound

Molecular Framework

Aromatic heteropolycyclic compounds

External Descriptors

Not Available

Ontology

Physiological effect

Not Available

Disposition

Biological location

Non-excretory biofluid

Biofluid or Excreta

Blood (PMID: 31557052)

Source

Exogenous

Exogenous (HMDB: HMDB0250323)

Process

Not Available

Role

Not Available

Physical Properties

State

Not Available

Experimental Molecular Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Experimental Chromatographic Properties

Not Available

Predicted Molecular Properties

Property	Value	Source
logP	0.36	ALOGPS
logP	-0.42	ChemAxon
logS	-2.9	ALOGPS
pKa (Strongest Acidic)	5.64	ChemAxon
pKa (Strongest Basic)	9.63	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	6	ChemAxon
Hydrogen Donor Count	2	ChemAxon
Polar Surface Area	86.87 Å²	ChemAxon
Rotatable Bond Count	3	ChemAxon
Refractivity	92.51 m³·mol⁻¹	ChemAxon
Polarizability	35.38 Å³	ChemAxon
Number of Rings	4	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

Predicted Chromatographic Properties

Predicted Collision Cross Sections

Predictor	Adduct Type	CCS Value (Å²)	Reference
DeepCCS	[M+H]+	184.782	30932474
DeepCCS	[M-H]-	182.361	30932474
DeepCCS	[M-2H]-	216.716	30932474
DeepCCS	[M+Na]+	192.08	30932474
AllCCS	[M+H]+	180.1	32859911
AllCCS	[M+H-H2O]+	177.3	32859911
AllCCS	[M+NH4]+	182.6	32859911
AllCCS	[M+Na]+	183.3	32859911
AllCCS	[M-H]-	181.6	32859911
AllCCS	[M+Na-2H]-	181.3	32859911
AllCCS	[M+HCOO]-	181.1	32859911

Predicted Kovats Retention Indices

Underivatized

Metabolite	SMILES	Kovats RI Value	Column Type	Reference
Clinafloxacin	NC1CCN(C1)C1=C(F)C=C2C(=O)C(=CN(C3CC3)C2=C1Cl)C(O)=O	4027.0	Standard polar	33892256
Clinafloxacin	NC1CCN(C1)C1=C(F)C=C2C(=O)C(=CN(C3CC3)C2=C1Cl)C(O)=O	2611.0	Standard non polar	33892256
Clinafloxacin	NC1CCN(C1)C1=C(F)C=C2C(=O)C(=CN(C3CC3)C2=C1Cl)C(O)=O	3481.9	Semi standard non polar	33892256

Derivatized

Derivative Name / Structure	SMILES	Kovats RI Value	Column Type	Reference
Clinafloxacin,2TMS,isomer #1	C[Si](C)(C)NC1CCN(C2=C(F)C=C3C(=O)C(C(=O)O[Si](C)(C)C)=CN(C4CC4)C3=C2Cl)C1	3269.8	Semi standard non polar	33892256
Clinafloxacin,2TMS,isomer #1	C[Si](C)(C)NC1CCN(C2=C(F)C=C3C(=O)C(C(=O)O[Si](C)(C)C)=CN(C4CC4)C3=C2Cl)C1	3061.2	Standard non polar	33892256
Clinafloxacin,2TMS,isomer #1	C[Si](C)(C)NC1CCN(C2=C(F)C=C3C(=O)C(C(=O)O[Si](C)(C)C)=CN(C4CC4)C3=C2Cl)C1	3734.2	Standard polar	33892256
Clinafloxacin,2TMS,isomer #2	C[Si](C)(C)N(C1CCN(C2=C(F)C=C3C(=O)C(C(=O)O)=CN(C4CC4)C3=C2Cl)C1)[Si](C)(C)C	3244.0	Semi standard non polar	33892256
Clinafloxacin,2TMS,isomer #2	C[Si](C)(C)N(C1CCN(C2=C(F)C=C3C(=O)C(C(=O)O)=CN(C4CC4)C3=C2Cl)C1)[Si](C)(C)C	3110.7	Standard non polar	33892256
Clinafloxacin,2TMS,isomer #2	C[Si](C)(C)N(C1CCN(C2=C(F)C=C3C(=O)C(C(=O)O)=CN(C4CC4)C3=C2Cl)C1)[Si](C)(C)C	3917.2	Standard polar	33892256
Clinafloxacin,3TMS,isomer #1	C[Si](C)(C)OC(=O)C1=CN(C2CC2)C2=C(Cl)C(N3CCC(N([Si](C)(C)C)[Si](C)(C)C)C3)=C(F)C=C2C1=O	3171.3	Semi standard non polar	33892256
Clinafloxacin,3TMS,isomer #1	C[Si](C)(C)OC(=O)C1=CN(C2CC2)C2=C(Cl)C(N3CCC(N([Si](C)(C)C)[Si](C)(C)C)C3)=C(F)C=C2C1=O	3195.8	Standard non polar	33892256
Clinafloxacin,3TMS,isomer #1	C[Si](C)(C)OC(=O)C1=CN(C2CC2)C2=C(Cl)C(N3CCC(N([Si](C)(C)C)[Si](C)(C)C)C3)=C(F)C=C2C1=O	3585.7	Standard polar	33892256
Clinafloxacin,2TBDMS,isomer #1	CC(C)(C)[Si](C)(C)NC1CCN(C2=C(F)C=C3C(=O)C(C(=O)O[Si](C)(C)C(C)(C)C)=CN(C4CC4)C3=C2Cl)C1	3622.5	Semi standard non polar	33892256
Clinafloxacin,2TBDMS,isomer #1	CC(C)(C)[Si](C)(C)NC1CCN(C2=C(F)C=C3C(=O)C(C(=O)O[Si](C)(C)C(C)(C)C)=CN(C4CC4)C3=C2Cl)C1	3499.0	Standard non polar	33892256
Clinafloxacin,2TBDMS,isomer #1	CC(C)(C)[Si](C)(C)NC1CCN(C2=C(F)C=C3C(=O)C(C(=O)O[Si](C)(C)C(C)(C)C)=CN(C4CC4)C3=C2Cl)C1	3838.7	Standard polar	33892256
Clinafloxacin,2TBDMS,isomer #2	CC(C)(C)[Si](C)(C)N(C1CCN(C2=C(F)C=C3C(=O)C(C(=O)O)=CN(C4CC4)C3=C2Cl)C1)[Si](C)(C)C(C)(C)C	3742.2	Semi standard non polar	33892256
Clinafloxacin,2TBDMS,isomer #2	CC(C)(C)[Si](C)(C)N(C1CCN(C2=C(F)C=C3C(=O)C(C(=O)O)=CN(C4CC4)C3=C2Cl)C1)[Si](C)(C)C(C)(C)C	3519.1	Standard non polar	33892256
Clinafloxacin,2TBDMS,isomer #2	CC(C)(C)[Si](C)(C)N(C1CCN(C2=C(F)C=C3C(=O)C(C(=O)O)=CN(C4CC4)C3=C2Cl)C1)[Si](C)(C)C(C)(C)C	3900.6	Standard polar	33892256
Clinafloxacin,3TBDMS,isomer #1	CC(C)(C)[Si](C)(C)OC(=O)C1=CN(C2CC2)C2=C(Cl)C(N3CCC(N([Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C)C3)=C(F)C=C2C1=O	3811.5	Semi standard non polar	33892256
Clinafloxacin,3TBDMS,isomer #1	CC(C)(C)[Si](C)(C)OC(=O)C1=CN(C2CC2)C2=C(Cl)C(N3CCC(N([Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C)C3)=C(F)C=C2C1=O	3756.7	Standard non polar	33892256
Clinafloxacin,3TBDMS,isomer #1	CC(C)(C)[Si](C)(C)OC(=O)C1=CN(C2CC2)C2=C(Cl)C(N3CCC(N([Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C)C3)=C(F)C=C2C1=O	3729.2	Standard polar	33892256

Spectra

GC-MS Spectra

Spectrum Type	Description	Splash Key	Deposition Date	Source	View
Predicted GC-MS	Predicted GC-MS Spectrum - Clinafloxacin GC-MS (Non-derivatized) - 70eV, Positive	splash10-002n-1039000000-46fee9b1db7d76ea4b1c	2021-09-23	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - Clinafloxacin GC-MS (Non-derivatized) - 70eV, Positive	Not Available	2021-10-12	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - Clinafloxacin GC-MS (TMS_1_1) - 70eV, Positive	Not Available	2021-11-03	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - Clinafloxacin GC-MS (TMS_1_2) - 70eV, Positive	Not Available	2021-11-03	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - Clinafloxacin GC-MS (TBDMS_1_1) - 70eV, Positive	Not Available	2021-11-03	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - Clinafloxacin GC-MS (TBDMS_1_2) - 70eV, Positive	Not Available	2021-11-03	Wishart Lab	View Spectrum

MS/MS Spectra

Spectrum Type	Description	Splash Key	Deposition Date	Source	View
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - Clinafloxacin 10V, Positive-QTOF	splash10-014i-0009000000-cea22edddbb364033d7c	2021-10-12	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - Clinafloxacin 20V, Positive-QTOF	splash10-0002-0009000000-f68dfc073b84c9c988ff	2021-10-12	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - Clinafloxacin 40V, Positive-QTOF	splash10-054o-0097000000-54f415efc6815b2aa1d2	2021-10-12	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - Clinafloxacin 10V, Negative-QTOF	splash10-03di-0009000000-8b07d74829767f9b3428	2021-10-12	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - Clinafloxacin 20V, Negative-QTOF	splash10-03di-0019000000-c90697496617737ee6cc	2021-10-12	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - Clinafloxacin 40V, Negative-QTOF	splash10-03fr-1095000000-e4893b1a6d457b1dba09	2021-10-12	Wishart Lab	View Spectrum

Biological Properties

Cellular Locations

Not Available

Biospecimen Locations

Blood

Tissue Locations

Not Available

Pathways

Not Available

Name	SMPDB/PathBank	KEGG

Normal Concentrations

Biospecimen	Status	Value	Age	Sex	Condition	Reference	Details
Blood	Detected but not Quantified	Not Quantified	Not Specified	Not Specified	Normal	31557052	details

Abnormal Concentrations

Not Available

Associated Disorders and Diseases

Disease References

None

Associated OMIM IDs

None

External Links

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FooDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

54184

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

60063

PDB ID

Not Available

ChEBI ID

Not Available

Food Biomarker Ontology

Not Available

VMH ID

Not Available

MarkerDB ID

Not Available

Good Scents ID

Not Available

References

Synthesis Reference

Not Available

Material Safety Data Sheet (MSDS)

Not Available

General References

Barupal DK, Fiehn O: Generating the Blood Exposome Database Using a Comprehensive Text Mining and Database Fusion Approach. Environ Health Perspect. 2019 Sep;127(9):97008. doi: 10.1289/EHP4713. Epub 2019 Sep 26. [PubMed:31557052 ]

Showing metabocard for Clinafloxacin (HMDB0250323)

MOL for HMDB0250323 (Clinafloxacin)

3D MOL for HMDB0250323 (Clinafloxacin)

3D SDF for HMDB0250323 (Clinafloxacin)

3D-SDF for HMDB0250323 (Clinafloxacin)

PDB for HMDB0250323 (Clinafloxacin)

3D PDB for HMDB0250323 (Clinafloxacin)

SMILES for HMDB0250323 (Clinafloxacin)

INCHI for HMDB0250323 (Clinafloxacin)

Structure for HMDB0250323 (Clinafloxacin)

3D Structure for HMDB0250323 (Clinafloxacin)

Predicted Collision Cross Sections

Predicted Kovats Retention Indices

Underivatized

Derivatized

GC-MS Spectra

MS/MS Spectra