Jump To Section:

Identification Taxonomy Ontology Physical properties Spectra Biological properties Concentrations Links References XML

Record Information

Version

5.0

Status

Detected but not Quantified

Creation Date

2021-09-11 07:42:16 UTC

Update Date

2021-09-26 23:02:11 UTC

HMDB ID

HMDB0250612

Secondary Accession Numbers

None

Metabolite Identification

Common Name

Cyanoimipramine

Description

Cyanoimipramine, also known as cianopramine, belongs to the class of organic compounds known as dibenzazepines. Dibenzazepines are compounds with two benzene rings connected by an azepine ring. Azepine is an unsaturated seven-member heterocycle with one nitrogen atom replacing a carbon atom. Based on a literature review very few articles have been published on Cyanoimipramine. This compound has been identified in human blood as reported by (PMID: 31557052 ). Cyanoimipramine is not a naturally occurring metabolite and is only found in those individuals exposed to this compound or its derivatives. Technically Cyanoimipramine is part of the human exposome. The exposome can be defined as the collection of all the exposures of an individual in a lifetime and how those exposures relate to health. An individual's exposure begins before birth and includes insults from environmental and occupational sources.

Structure

MOL 3D MOL SDF 3D SDF PDB 3D PDB SMILES InChI

HMDB0250612
     RDKit          3D
Cyanoimipramine
 46 48  0  0  0  0  0  0  0  0999 V2000
    4.6967   -0.7948   -0.4656 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2951    0.5351   -0.1724 N   0  0  0  0  0  0  0  0  0  0  0  0
    5.3610    1.4428    0.1192 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1352    0.6810    0.6352 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8614    0.2148   -0.1113 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7073    0.3901    0.7701 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6018    0.0459    0.4151 N   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0274   -1.3048    0.2895 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0259   -2.1473    0.6452 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2291   -3.5144    0.5989 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4273   -4.0671    0.2001 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4393   -3.2160   -0.1583 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2394   -1.8629   -0.1128 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4628   -1.0983   -0.5184 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7568   -0.0710    0.5929 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1503    0.2912    0.6110 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.2767    0.5712    0.6105 N   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9128    1.1351    0.2700 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6318    2.2735    0.0258 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9385    3.4202   -0.3108 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5641    3.4454   -0.4055 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8428    2.2780   -0.1538 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5037    1.1301    0.1824 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.6042   -1.0772   -1.5333 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.1886   -1.4883    0.2189 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.7960   -0.8749   -0.2380 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.2290    1.1411   -0.5322 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.1230    2.4951   -0.0557 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.6998    1.2390    1.1581 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.0312    1.6979    1.0004 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.2359    0.0094    1.5140 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.0306   -0.7463   -0.6138 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9159    0.9315   -0.9934 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.8256    1.4107    1.2728 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.8748   -0.1285    1.7997 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.8880   -1.8033    0.9648 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5502   -4.2138    0.8756 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5584   -5.1606    0.1734 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4071   -3.5736   -0.4817 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3056   -1.7891   -0.6545 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3072   -0.5027   -1.4365 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3786   -0.5226    1.5240 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6901    2.2662    0.0952 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5429    4.3205   -0.5010 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0498    4.3411   -0.6669 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2203    2.2507   -0.2336 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  2  4  1  0
  4  5  1  0
  5  6  1  0
  6  7  1  0
  7  8  1  0
  8  9  2  0
  9 10  1  0
 10 11  2  0
 11 12  1  0
 12 13  2  0
 13 14  1  0
 14 15  1  0
 15 16  1  0
 16 17  3  0
 15 18  1  0
 18 19  2  0
 19 20  1  0
 20 21  2  0
 21 22  1  0
 22 23  2  0
 23  7  1  0
 13  8  1  0
 23 18  1  0
  1 24  1  0
  1 25  1  0
  1 26  1  0
  3 27  1  0
  3 28  1  0
  3 29  1  0
  4 30  1  0
  4 31  1  0
  5 32  1  0
  5 33  1  0
  6 34  1  0
  6 35  1  0
  9 36  1  0
 10 37  1  0
 11 38  1  0
 12 39  1  0
 14 40  1  0
 14 41  1  0
 15 42  1  0
 19 43  1  0
 20 44  1  0
 21 45  1  0
 22 46  1  0
M  END

  Mrv1652309112109422D          

 23 25  0  0  0  0            999 V2000
   -1.9394   -2.3662    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2250   -1.9537    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2250   -1.1287    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5105   -2.3662    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2040   -1.9537    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9184   -2.3662    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6329   -1.9537    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    1.5713   -1.1310    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7829   -0.8878    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5993   -0.0835    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2041    0.4776    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9925    0.2345    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1760   -0.5698    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9918   -0.6928    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4043   -1.4073    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1029   -2.1752    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7077   -2.7364    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5241   -3.5407    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7358   -3.7839    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1310   -3.2227    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3146   -2.4184    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2270   -1.3456    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0497   -1.2840    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  2  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  2  0  0  0  0
  9 10  1  0  0  0  0
 10 11  2  0  0  0  0
 11 12  1  0  0  0  0
 12 13  2  0  0  0  0
  8 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  1  0  0  0  0
 15 16  1  0  0  0  0
 16 17  2  0  0  0  0
 17 18  1  0  0  0  0
 18 19  2  0  0  0  0
 19 20  1  0  0  0  0
 20 21  2  0  0  0  0
 16 21  1  0  0  0  0
  7 21  1  0  0  0  0
 15 22  1  0  0  0  0
 22 23  3  0  0  0  0
M  END
> <DATABASE_ID>
HMDB0250612

> <DATABASE_NAME>
hmdb

> <SMILES>
CN(C)CCCN1C2=CC=CC=C2CC(C#N)C2=CC=CC=C12

> <INCHI_IDENTIFIER>
InChI=1S/C20H23N3/c1-22(2)12-7-13-23-19-10-5-3-8-16(19)14-17(15-21)18-9-4-6-11-20(18)23/h3-6,8-11,17H,7,12-14H2,1-2H3

> <INCHI_KEY>
WOWFZCWPCPLCDD-UHFFFAOYSA-N

> <FORMULA>
C20H23N3

> <MOLECULAR_WEIGHT>
305.425

> <EXACT_MASS>
305.189197753

> <JCHEM_ACCEPTOR_COUNT>
3

> <JCHEM_ATOM_COUNT>
46

> <JCHEM_AVERAGE_POLARIZABILITY>
35.251421421239726

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
0

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
2-[3-(dimethylamino)propyl]-2-azatricyclo[9.4.0.0^{3,8}]pentadeca-1(15),3,5,7,11,13-hexaene-9-carbonitrile

> <ALOGPS_LOGP>
3.80

> <JCHEM_LOGP>
3.559262174333333

> <ALOGPS_LOGS>
-3.80

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
3

> <JCHEM_PHYSIOLOGICAL_CHARGE>
1

> <JCHEM_PKA_STRONGEST_ACIDIC>
14.387666699744742

> <JCHEM_PKA_STRONGEST_BASIC>
9.196974266409123

> <JCHEM_POLAR_SURFACE_AREA>
30.27

> <JCHEM_REFRACTIVITY>
95.82480000000001

> <JCHEM_ROTATABLE_BOND_COUNT>
4

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
4.80e-02 g/l

> <JCHEM_TRADITIONAL_IUPAC>
2-[3-(dimethylamino)propyl]-2-azatricyclo[9.4.0.0^{3,8}]pentadeca-1(15),3,5,7,11,13-hexaene-9-carbonitrile

> <JCHEM_VEBER_RULE>
1

$$$$

HMDB0250612
     RDKit          3D
Cyanoimipramine
 46 48  0  0  0  0  0  0  0  0999 V2000
    4.6967   -0.7948   -0.4656 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2951    0.5351   -0.1724 N   0  0  0  0  0  0  0  0  0  0  0  0
    5.3610    1.4428    0.1192 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1352    0.6810    0.6352 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8614    0.2148   -0.1113 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7073    0.3901    0.7701 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6018    0.0459    0.4151 N   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0274   -1.3048    0.2895 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0259   -2.1473    0.6452 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2291   -3.5144    0.5989 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4273   -4.0671    0.2001 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4393   -3.2160   -0.1583 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2394   -1.8629   -0.1128 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4628   -1.0983   -0.5184 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7568   -0.0710    0.5929 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1503    0.2912    0.6110 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.2767    0.5712    0.6105 N   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9128    1.1351    0.2700 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6318    2.2735    0.0258 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9385    3.4202   -0.3108 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5641    3.4454   -0.4055 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8428    2.2780   -0.1538 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5037    1.1301    0.1824 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.6042   -1.0772   -1.5333 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.1886   -1.4883    0.2189 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.7960   -0.8749   -0.2380 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.2290    1.1411   -0.5322 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.1230    2.4951   -0.0557 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.6998    1.2390    1.1581 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.0312    1.6979    1.0004 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.2359    0.0094    1.5140 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.0306   -0.7463   -0.6138 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9159    0.9315   -0.9934 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.8256    1.4107    1.2728 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.8748   -0.1285    1.7997 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.8880   -1.8033    0.9648 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5502   -4.2138    0.8756 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5584   -5.1606    0.1734 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4071   -3.5736   -0.4817 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3056   -1.7891   -0.6545 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3072   -0.5027   -1.4365 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3786   -0.5226    1.5240 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6901    2.2662    0.0952 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5429    4.3205   -0.5010 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0498    4.3411   -0.6669 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2203    2.2507   -0.2336 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  2  4  1  0
  4  5  1  0
  5  6  1  0
  6  7  1  0
  7  8  1  0
  8  9  2  0
  9 10  1  0
 10 11  2  0
 11 12  1  0
 12 13  2  0
 13 14  1  0
 14 15  1  0
 15 16  1  0
 16 17  3  0
 15 18  1  0
 18 19  2  0
 19 20  1  0
 20 21  2  0
 21 22  1  0
 22 23  2  0
 23  7  1  0
 13  8  1  0
 23 18  1  0
  1 24  1  0
  1 25  1  0
  1 26  1  0
  3 27  1  0
  3 28  1  0
  3 29  1  0
  4 30  1  0
  4 31  1  0
  5 32  1  0
  5 33  1  0
  6 34  1  0
  6 35  1  0
  9 36  1  0
 10 37  1  0
 11 38  1  0
 12 39  1  0
 14 40  1  0
 14 41  1  0
 15 42  1  0
 19 43  1  0
 20 44  1  0
 21 45  1  0
 22 46  1  0
M  END

HEADER    PROTEIN                                 11-SEP-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   11-SEP-21         0                                  
HETATM    1  C   UNK     0      -3.620  -4.417   0.000  0.00  0.00           C+0
HETATM    2  N   UNK     0      -2.287  -3.647   0.000  0.00  0.00           N+0
HETATM    3  C   UNK     0      -2.287  -2.107   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0      -0.953  -4.417   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       0.381  -3.647   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       1.714  -4.417   0.000  0.00  0.00           C+0
HETATM    7  N   UNK     0       3.048  -3.647   0.000  0.00  0.00           N+0
HETATM    8  C   UNK     0       2.933  -2.111   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       1.461  -1.657   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       1.119  -0.156   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       2.248   0.892   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       3.719   0.438   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       4.062  -1.064   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       5.585  -1.293   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       6.355  -2.627   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       5.792  -4.060   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       6.921  -5.108   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       6.578  -6.609   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0       5.107  -7.063   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0       3.978  -6.016   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0       4.321  -4.514   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0       7.890  -2.512   0.000  0.00  0.00           C+0
HETATM   23  N   UNK     0       9.426  -2.397   0.000  0.00  0.00           N+0
CONECT    1    2                                                            
CONECT    2    1    3    4                                                  
CONECT    3    2                                                            
CONECT    4    2    5                                                       
CONECT    5    4    6                                                       
CONECT    6    5    7                                                       
CONECT    7    6    8   21                                                  
CONECT    8    7    9   13                                                  
CONECT    9    8   10                                                       
CONECT   10    9   11                                                       
CONECT   11   10   12                                                       
CONECT   12   11   13                                                       
CONECT   13   12    8   14                                                  
CONECT   14   13   15                                                       
CONECT   15   14   16   22                                                  
CONECT   16   15   17   21                                                  
CONECT   17   16   18                                                       
CONECT   18   17   19                                                       
CONECT   19   18   20                                                       
CONECT   20   19   21                                                       
CONECT   21   20   16    7                                                  
CONECT   22   15   23                                                       
CONECT   23   22                                                            
MASTER        0    0    0    0    0    0    0    0   23    0   50    0
END

COMPND    HMDB0250612
HETATM    1  C1  UNL     1       4.697  -0.795  -0.466  1.00  0.00           C  
HETATM    2  N1  UNL     1       4.295   0.535  -0.172  1.00  0.00           N  
HETATM    3  C2  UNL     1       5.361   1.443   0.119  1.00  0.00           C  
HETATM    4  C3  UNL     1       3.135   0.681   0.635  1.00  0.00           C  
HETATM    5  C4  UNL     1       1.861   0.215  -0.111  1.00  0.00           C  
HETATM    6  C5  UNL     1       0.707   0.390   0.770  1.00  0.00           C  
HETATM    7  N2  UNL     1      -0.602   0.046   0.415  1.00  0.00           N  
HETATM    8  C6  UNL     1      -1.027  -1.305   0.290  1.00  0.00           C  
HETATM    9  C7  UNL     1      -0.026  -2.147   0.645  1.00  0.00           C  
HETATM   10  C8  UNL     1      -0.229  -3.514   0.599  1.00  0.00           C  
HETATM   11  C9  UNL     1      -1.427  -4.067   0.200  1.00  0.00           C  
HETATM   12  C10 UNL     1      -2.439  -3.216  -0.158  1.00  0.00           C  
HETATM   13  C11 UNL     1      -2.239  -1.863  -0.113  1.00  0.00           C  
HETATM   14  C12 UNL     1      -3.463  -1.098  -0.518  1.00  0.00           C  
HETATM   15  C13 UNL     1      -3.757  -0.071   0.593  1.00  0.00           C  
HETATM   16  C14 UNL     1      -5.150   0.291   0.611  1.00  0.00           C  
HETATM   17  N3  UNL     1      -6.277   0.571   0.611  1.00  0.00           N  
HETATM   18  C15 UNL     1      -2.913   1.135   0.270  1.00  0.00           C  
HETATM   19  C16 UNL     1      -3.632   2.273   0.026  1.00  0.00           C  
HETATM   20  C17 UNL     1      -2.939   3.420  -0.311  1.00  0.00           C  
HETATM   21  C18 UNL     1      -1.564   3.445  -0.405  1.00  0.00           C  
HETATM   22  C19 UNL     1      -0.843   2.278  -0.154  1.00  0.00           C  
HETATM   23  C20 UNL     1      -1.504   1.130   0.182  1.00  0.00           C  
HETATM   24  H1  UNL     1       4.604  -1.077  -1.533  1.00  0.00           H  
HETATM   25  H2  UNL     1       4.189  -1.488   0.219  1.00  0.00           H  
HETATM   26  H3  UNL     1       5.796  -0.875  -0.238  1.00  0.00           H  
HETATM   27  H4  UNL     1       6.229   1.141  -0.532  1.00  0.00           H  
HETATM   28  H5  UNL     1       5.123   2.495  -0.056  1.00  0.00           H  
HETATM   29  H6  UNL     1       5.700   1.239   1.158  1.00  0.00           H  
HETATM   30  H7  UNL     1       3.031   1.698   1.000  1.00  0.00           H  
HETATM   31  H8  UNL     1       3.236   0.009   1.514  1.00  0.00           H  
HETATM   32  H9  UNL     1       2.031  -0.746  -0.614  1.00  0.00           H  
HETATM   33  H10 UNL     1       1.916   0.931  -0.993  1.00  0.00           H  
HETATM   34  H11 UNL     1       0.826   1.411   1.273  1.00  0.00           H  
HETATM   35  H12 UNL     1       0.875  -0.128   1.800  1.00  0.00           H  
HETATM   36  H13 UNL     1       0.888  -1.803   0.965  1.00  0.00           H  
HETATM   37  H14 UNL     1       0.550  -4.214   0.876  1.00  0.00           H  
HETATM   38  H15 UNL     1      -1.558  -5.161   0.173  1.00  0.00           H  
HETATM   39  H16 UNL     1      -3.407  -3.574  -0.482  1.00  0.00           H  
HETATM   40  H17 UNL     1      -4.306  -1.789  -0.654  1.00  0.00           H  
HETATM   41  H18 UNL     1      -3.307  -0.503  -1.437  1.00  0.00           H  
HETATM   42  H19 UNL     1      -3.379  -0.523   1.524  1.00  0.00           H  
HETATM   43  H20 UNL     1      -4.690   2.266   0.095  1.00  0.00           H  
HETATM   44  H21 UNL     1      -3.543   4.321  -0.501  1.00  0.00           H  
HETATM   45  H22 UNL     1      -1.050   4.341  -0.667  1.00  0.00           H  
HETATM   46  H23 UNL     1       0.220   2.251  -0.234  1.00  0.00           H  
CONECT    1    2   24   25   26
CONECT    2    3    4
CONECT    3   27   28   29
CONECT    4    5   30   31
CONECT    5    6   32   33
CONECT    6    7   34   35
CONECT    7    8   23
CONECT    8    9    9   13
CONECT    9   10   36
CONECT   10   11   11   37
CONECT   11   12   38
CONECT   12   13   13   39
CONECT   13   14
CONECT   14   15   40   41
CONECT   15   16   18   42
CONECT   16   17   17   17
CONECT   18   19   19   23
CONECT   19   20   43
CONECT   20   21   21   44
CONECT   21   22   45
CONECT   22   23   23   46
END

HMDB0250612
     RDKit          3D
Cyanoimipramine
 46 48  0  0  0  0  0  0  0  0999 V2000
    4.6967   -0.7948   -0.4656 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2951    0.5351   -0.1724 N   0  0  0  0  0  0  0  0  0  0  0  0
    5.3610    1.4428    0.1192 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1352    0.6810    0.6352 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8614    0.2148   -0.1113 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7073    0.3901    0.7701 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6018    0.0459    0.4151 N   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0274   -1.3048    0.2895 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0259   -2.1473    0.6452 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2291   -3.5144    0.5989 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4273   -4.0671    0.2001 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4393   -3.2160   -0.1583 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2394   -1.8629   -0.1128 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4628   -1.0983   -0.5184 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7568   -0.0710    0.5929 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1503    0.2912    0.6110 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.2767    0.5712    0.6105 N   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9128    1.1351    0.2700 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6318    2.2735    0.0258 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9385    3.4202   -0.3108 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5641    3.4454   -0.4055 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8428    2.2780   -0.1538 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5037    1.1301    0.1824 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.6042   -1.0772   -1.5333 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.1886   -1.4883    0.2189 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.7960   -0.8749   -0.2380 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.2290    1.1411   -0.5322 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.1230    2.4951   -0.0557 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.6998    1.2390    1.1581 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.0312    1.6979    1.0004 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.2359    0.0094    1.5140 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.0306   -0.7463   -0.6138 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9159    0.9315   -0.9934 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.8256    1.4107    1.2728 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.8748   -0.1285    1.7997 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.8880   -1.8033    0.9648 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5502   -4.2138    0.8756 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5584   -5.1606    0.1734 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4071   -3.5736   -0.4817 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3056   -1.7891   -0.6545 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3072   -0.5027   -1.4365 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3786   -0.5226    1.5240 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6901    2.2662    0.0952 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5429    4.3205   -0.5010 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0498    4.3411   -0.6669 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2203    2.2507   -0.2336 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  2  4  1  0
  4  5  1  0
  5  6  1  0
  6  7  1  0
  7  8  1  0
  8  9  2  0
  9 10  1  0
 10 11  2  0
 11 12  1  0
 12 13  2  0
 13 14  1  0
 14 15  1  0
 15 16  1  0
 16 17  3  0
 15 18  1  0
 18 19  2  0
 19 20  1  0
 20 21  2  0
 21 22  1  0
 22 23  2  0
 23  7  1  0
 13  8  1  0
 23 18  1  0
  1 24  1  0
  1 25  1  0
  1 26  1  0
  3 27  1  0
  3 28  1  0
  3 29  1  0
  4 30  1  0
  4 31  1  0
  5 32  1  0
  5 33  1  0
  6 34  1  0
  6 35  1  0
  9 36  1  0
 10 37  1  0
 11 38  1  0
 12 39  1  0
 14 40  1  0
 14 41  1  0
 15 42  1  0
 19 43  1  0
 20 44  1  0
 21 45  1  0
 22 46  1  0
M  END

View in JSmol View Stereo Labels

Synonyms

Value	Source
3-Cyano-imipramine	HMDB
3-Cyanoimipramine	HMDB
5-(3 (Dimethylamino)propyl)-10,11-dihydro-5H-dibenz(b,F)azepine-3-carbonitrile	HMDB
Cianopramine	HMDB

Chemical Formula

C₂₀H₂₃N₃

Average Molecular Weight

305.425

Monoisotopic Molecular Weight

305.189197753

IUPAC Name

2-[3-(dimethylamino)propyl]-2-azatricyclo[9.4.0.0^{3,8}]pentadeca-1(15),3,5,7,11,13-hexaene-9-carbonitrile

Traditional Name

2-[3-(dimethylamino)propyl]-2-azatricyclo[9.4.0.0^{3,8}]pentadeca-1(15),3,5,7,11,13-hexaene-9-carbonitrile

CAS Registry Number

Not Available

SMILES

CN(C)CCCN1C2=CC=CC=C2CC(C#N)C2=CC=CC=C12

InChI Identifier

InChI=1S/C20H23N3/c1-22(2)12-7-13-23-19-10-5-3-8-16(19)14-17(15-21)18-9-4-6-11-20(18)23/h3-6,8-11,17H,7,12-14H2,1-2H3

InChI Key

WOWFZCWPCPLCDD-UHFFFAOYSA-N

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as dibenzazepines. Dibenzazepines are compounds with two benzene rings connected by an azepine ring. Azepine is an unsaturated seven-member heterocycle with one nitrogen atom replacing a carbon atom.

Kingdom

Organic compounds

Super Class

Organoheterocyclic compounds

Class

Benzazepines

Sub Class

Dibenzazepines

Direct Parent

Dibenzazepines

Alternative Parents

Substituents

Dibenzazepine
Alkyldiarylamine
Tertiary aliphatic/aromatic amine
Azepine
Benzenoid
Tertiary aliphatic amine
Tertiary amine
Azacycle
Nitrile
Carbonitrile
Organic nitrogen compound
Organopnictogen compound
Hydrocarbon derivative
Organonitrogen compound
Amine
Aromatic heteropolycyclic compound

Molecular Framework

Aromatic heteropolycyclic compounds

External Descriptors

Not Available

Ontology

Physiological effect

Not Available

Disposition

Biological location

Non-excretory biofluid

Biofluid or Excreta

Blood (PMID: 31557052)

Source

Exogenous

Exogenous (PMID: 31557052)

Process

Not Available

Role

Not Available

Physical Properties

State

Not Available

Experimental Molecular Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Experimental Chromatographic Properties

Not Available

Predicted Molecular Properties

Property	Value	Source
logP	3.8	ALOGPS
logP	3.56	ChemAxon
logS	-3.8	ALOGPS
pKa (Strongest Acidic)	14.39	ChemAxon
pKa (Strongest Basic)	9.2	ChemAxon
Physiological Charge	1	ChemAxon
Hydrogen Acceptor Count	3	ChemAxon
Hydrogen Donor Count	0	ChemAxon
Polar Surface Area	30.27 Å²	ChemAxon
Rotatable Bond Count	4	ChemAxon
Refractivity	95.82 m³·mol⁻¹	ChemAxon
Polarizability	35.25 Å³	ChemAxon
Number of Rings	3	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	Yes	ChemAxon
MDDR-like Rule	No	ChemAxon

Predicted Chromatographic Properties

Predicted Collision Cross Sections

Predictor	Adduct Type	CCS Value (Å²)	Reference
DeepCCS	[M-2H]-	201.574	30932474
DeepCCS	[M+Na]+	177.139	30932474

Predicted Kovats Retention Indices

Underivatized

Metabolite	SMILES	Kovats RI Value	Column Type	Reference
Cyanoimipramine	CN(C)CCCN1C2=CC=CC=C2CC(C#N)C2=CC=CC=C12	3604.2	Standard polar	33892256
Cyanoimipramine	CN(C)CCCN1C2=CC=CC=C2CC(C#N)C2=CC=CC=C12	2532.5	Standard non polar	33892256
Cyanoimipramine	CN(C)CCCN1C2=CC=CC=C2CC(C#N)C2=CC=CC=C12	2462.7	Semi standard non polar	33892256

Spectra

GC-MS Spectra

Spectrum Type	Description	Splash Key	Deposition Date	Source	View
Predicted GC-MS	Predicted GC-MS Spectrum - Cyanoimipramine GC-MS (Non-derivatized) - 70eV, Positive	splash10-0a4i-7190000000-a262935f06caec4e8be2	2021-09-23	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - Cyanoimipramine GC-MS (Non-derivatized) - 70eV, Positive	Not Available	2021-10-12	Wishart Lab	View Spectrum

MS/MS Spectra

Spectrum Type	Description	Splash Key	Deposition Date	Source	View
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - Cyanoimipramine 10V, Positive-QTOF	splash10-0a4i-4009000000-5d2e017e1e2ce0edd671	2021-10-12	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - Cyanoimipramine 20V, Positive-QTOF	splash10-052r-9002000000-8c0888d0ab2f7ecfbda0	2021-10-12	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - Cyanoimipramine 40V, Positive-QTOF	splash10-0a4r-9000000000-9cf887dba613774f6c76	2021-10-12	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - Cyanoimipramine 10V, Negative-QTOF	splash10-0udi-0119000000-952f47e32111bd4b1ef9	2021-10-12	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - Cyanoimipramine 20V, Negative-QTOF	splash10-0006-0952000000-86c96a3e752fe687c9c9	2021-10-12	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - Cyanoimipramine 40V, Negative-QTOF	splash10-014i-0190000000-d2b93c489b95ac766778	2021-10-12	Wishart Lab	View Spectrum

Biological Properties

Cellular Locations

Not Available

Biospecimen Locations

Blood

Tissue Locations

Not Available

Pathways

Not Available

Name	SMPDB/PathBank	KEGG

Normal Concentrations

Biospecimen	Status	Value	Age	Sex	Condition	Reference	Details
Blood	Detected but not Quantified	Not Quantified	Not Specified	Not Specified	Normal	31557052	details

Abnormal Concentrations

Not Available

Associated Disorders and Diseases

Disease References

None

Associated OMIM IDs

None

External Links

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FooDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

67158950

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

129662329

PDB ID

Not Available

ChEBI ID

Not Available

Food Biomarker Ontology

Not Available

VMH ID

Not Available

MarkerDB ID

Not Available

Good Scents ID

Not Available

References

Synthesis Reference

Not Available

Material Safety Data Sheet (MSDS)

Not Available

General References

Barupal DK, Fiehn O: Generating the Blood Exposome Database Using a Comprehensive Text Mining and Database Fusion Approach. Environ Health Perspect. 2019 Sep;127(9):97008. doi: 10.1289/EHP4713. Epub 2019 Sep 26. [PubMed:31557052 ]

Showing metabocard for Cyanoimipramine (HMDB0250612)

MOL for HMDB0250612 (Cyanoimipramine)

3D MOL for HMDB0250612 (Cyanoimipramine)

3D SDF for HMDB0250612 (Cyanoimipramine)

3D-SDF for HMDB0250612 (Cyanoimipramine)

PDB for HMDB0250612 (Cyanoimipramine)

3D PDB for HMDB0250612 (Cyanoimipramine)

SMILES for HMDB0250612 (Cyanoimipramine)

INCHI for HMDB0250612 (Cyanoimipramine)

Structure for HMDB0250612 (Cyanoimipramine)

3D Structure for HMDB0250612 (Cyanoimipramine)

Predicted Collision Cross Sections

Predicted Kovats Retention Indices

Underivatized

GC-MS Spectra

MS/MS Spectra