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Record Information
Version5.0
StatusDetected but not Quantified
Creation Date2021-09-11 08:00:37 UTC
Update Date2021-09-26 23:02:34 UTC
HMDB IDHMDB0250863
Secondary Accession NumbersNone
Metabolite Identification
Common NameDaprodustat
DescriptionDaprodustat belongs to the class of organic compounds known as n-acyl-alpha amino acids. N-acyl-alpha amino acids are compounds containing an alpha amino acid which bears an acyl group at its terminal nitrogen atom. Based on a literature review a significant number of articles have been published on Daprodustat. This compound has been identified in human blood as reported by (PMID: 31557052 ). Daprodustat is not a naturally occurring metabolite and is only found in those individuals exposed to this compound or its derivatives. Technically Daprodustat is part of the human exposome. The exposome can be defined as the collection of all the exposures of an individual in a lifetime and how those exposures relate to health. An individual's exposure begins before birth and includes insults from environmental and occupational sources.
Structure
Thumb
Synonyms
ValueSource
2-(1,3-Dicyclohexyl-6-hydroxy-2,4-dioxo-1,2,3,4-tetrahydropyrimidine-5-carboxamido)acetic acidMeSH
GSK1278863ChEMBL
2-{[(1,3-dicyclohexyl-2,4,6-trioxo-1,3-diazinan-5-yl)(hydroxy)methylidene]amino}acetateGenerator
Chemical FormulaC19H27N3O6
Average Molecular Weight393.44
Monoisotopic Molecular Weight393.189985601
IUPAC Name2-[(1,3-dicyclohexyl-2,4,6-trioxo-1,3-diazinan-5-yl)formamido]acetic acid
Traditional Name[(1,3-dicyclohexyl-2,4,6-trioxo-1,3-diazinan-5-yl)formamido]acetic acid
CAS Registry NumberNot Available
SMILES
OC(=O)CNC(=O)C1C(=O)N(C2CCCCC2)C(=O)N(C2CCCCC2)C1=O
InChI Identifier
InChI=1S/C19H27N3O6/c23-14(24)11-20-16(25)15-17(26)21(12-7-3-1-4-8-12)19(28)22(18(15)27)13-9-5-2-6-10-13/h12-13,15H,1-11H2,(H,20,25)(H,23,24)
InChI KeyRUEYEZADQJCKGV-UHFFFAOYSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as n-acyl-alpha amino acids. N-acyl-alpha amino acids are compounds containing an alpha amino acid which bears an acyl group at its terminal nitrogen atom.
KingdomOrganic compounds
Super ClassOrganic acids and derivatives
ClassCarboxylic acids and derivatives
Sub ClassAmino acids, peptides, and analogues
Direct ParentN-acyl-alpha amino acids
Alternative Parents
Substituents
  • N-acyl-alpha-amino acid
  • Barbiturate
  • N-acyl urea
  • Pyrimidone
  • Ureide
  • 1,3-diazinane
  • Pyrimidine
  • 1,3-dicarbonyl compound
  • Dicarboximide
  • Urea
  • Secondary carboxylic acid amide
  • Carboxamide group
  • Carbonic acid derivative
  • Azacycle
  • Organoheterocyclic compound
  • Carboxylic acid
  • Monocarboxylic acid or derivatives
  • Hydrocarbon derivative
  • Organopnictogen compound
  • Organic oxide
  • Organic oxygen compound
  • Organonitrogen compound
  • Organooxygen compound
  • Carbonyl group
  • Organic nitrogen compound
  • Aliphatic heteromonocyclic compound
Molecular FrameworkAliphatic heteromonocyclic compounds
External DescriptorsNot Available
Ontology
Physiological effectNot Available
Disposition
ProcessNot Available
RoleNot Available
Physical Properties
StateNot Available
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
logP1.48ALOGPS
logP1.4ChemAxon
logS-3.1ALOGPS
pKa (Strongest Acidic)0.35ChemAxon
pKa (Strongest Basic)-9.1ChemAxon
Physiological Charge-2ChemAxon
Hydrogen Acceptor Count6ChemAxon
Hydrogen Donor Count2ChemAxon
Polar Surface Area124.09 ŲChemAxon
Rotatable Bond Count5ChemAxon
Refractivity96.89 m³·mol⁻¹ChemAxon
Polarizability40.18 ųChemAxon
Number of Rings3ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterYesChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
DeepCCS[M+H]+190.57730932474
DeepCCS[M-H]-188.21930932474
DeepCCS[M-2H]-222.1530932474
DeepCCS[M+Na]+197.37830932474
AllCCS[M+H]+188.132859911
AllCCS[M+H-H2O]+185.932859911
AllCCS[M+NH4]+190.232859911
AllCCS[M+Na]+190.732859911
AllCCS[M-H]-187.932859911
AllCCS[M+Na-2H]-187.332859911
AllCCS[M+HCOO]-186.832859911

Predicted Kovats Retention Indices

Underivatized

MetaboliteSMILESKovats RI ValueColumn TypeReference
DaprodustatOC(=O)CNC(=O)C1C(=O)N(C2CCCCC2)C(=O)N(C2CCCCC2)C1=O4109.4Standard polar33892256
DaprodustatOC(=O)CNC(=O)C1C(=O)N(C2CCCCC2)C(=O)N(C2CCCCC2)C1=O2716.6Standard non polar33892256
DaprodustatOC(=O)CNC(=O)C1C(=O)N(C2CCCCC2)C(=O)N(C2CCCCC2)C1=O3213.5Semi standard non polar33892256

Derivatized

Derivative Name / StructureSMILESKovats RI ValueColumn TypeReference
Daprodustat,2TMS,isomer #1C[Si](C)(C)OC(=O)CN(C(=O)C1C(=O)N(C2CCCCC2)C(=O)N(C2CCCCC2)C1=O)[Si](C)(C)C3017.1Semi standard non polar33892256
Daprodustat,2TMS,isomer #1C[Si](C)(C)OC(=O)CN(C(=O)C1C(=O)N(C2CCCCC2)C(=O)N(C2CCCCC2)C1=O)[Si](C)(C)C3067.5Standard non polar33892256
Daprodustat,2TMS,isomer #1C[Si](C)(C)OC(=O)CN(C(=O)C1C(=O)N(C2CCCCC2)C(=O)N(C2CCCCC2)C1=O)[Si](C)(C)C4265.9Standard polar33892256
Daprodustat,2TBDMS,isomer #1CC(C)(C)[Si](C)(C)OC(=O)CN(C(=O)C1C(=O)N(C2CCCCC2)C(=O)N(C2CCCCC2)C1=O)[Si](C)(C)C(C)(C)C3460.6Semi standard non polar33892256
Daprodustat,2TBDMS,isomer #1CC(C)(C)[Si](C)(C)OC(=O)CN(C(=O)C1C(=O)N(C2CCCCC2)C(=O)N(C2CCCCC2)C1=O)[Si](C)(C)C(C)(C)C3426.7Standard non polar33892256
Daprodustat,2TBDMS,isomer #1CC(C)(C)[Si](C)(C)OC(=O)CN(C(=O)C1C(=O)N(C2CCCCC2)C(=O)N(C2CCCCC2)C1=O)[Si](C)(C)C(C)(C)C4300.4Standard polar33892256
Spectra

GC-MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted GC-MSPredicted GC-MS Spectrum - Daprodustat GC-MS (Non-derivatized) - 70eV, Positivesplash10-0gbd-5119000000-482461d5c71ed5f6cfd02021-09-24Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Daprodustat GC-MS (Non-derivatized) - 70eV, PositiveNot Available2021-10-12Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Daprodustat GC-MS (TMS_1_1) - 70eV, PositiveNot Available2021-11-03Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Daprodustat GC-MS (TMS_1_2) - 70eV, PositiveNot Available2021-11-03Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Daprodustat GC-MS (TBDMS_1_1) - 70eV, PositiveNot Available2021-11-03Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Daprodustat GC-MS (TBDMS_1_2) - 70eV, PositiveNot Available2021-11-03Wishart LabView Spectrum

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Daprodustat 10V, Positive-QTOFsplash10-0006-2009000000-052fa2025f1479aa80ff2017-07-26Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Daprodustat 20V, Positive-QTOFsplash10-0006-5194000000-168ed00886fba3d98d272017-07-26Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Daprodustat 40V, Positive-QTOFsplash10-00c0-9003000000-af4566e5e94471f332d32017-07-26Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Daprodustat 10V, Negative-QTOFsplash10-0006-0194000000-ffa0ab25511887939ed62017-07-26Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Daprodustat 20V, Negative-QTOFsplash10-0002-1791000000-b51959a9f39c719391b22017-07-26Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Daprodustat 40V, Negative-QTOFsplash10-0006-9300000000-1699fde4d82ba50cd3b72017-07-26Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Daprodustat 10V, Positive-QTOFsplash10-0006-0009000000-0507583c784262f86d3b2021-10-12Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Daprodustat 20V, Positive-QTOFsplash10-00ku-0079000000-106e886f23566c4fea142021-10-12Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Daprodustat 40V, Positive-QTOFsplash10-01ec-2986000000-889ea9bb35aa0802fd812021-10-12Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Daprodustat 10V, Negative-QTOFsplash10-0006-0009000000-078b4564f5ab08102b442021-10-12Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Daprodustat 20V, Negative-QTOFsplash10-0005-3039000000-be8d889d2ba6f0c280182021-10-12Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Daprodustat 40V, Negative-QTOFsplash10-0006-9233000000-1eff7503460d950b314f2021-10-12Wishart LabView Spectrum
Biological Properties
Cellular LocationsNot Available
Biospecimen Locations
  • Blood
Tissue LocationsNot Available
Pathways
Normal Concentrations
BiospecimenStatusValueAgeSexConditionReferenceDetails
BloodDetected but not QuantifiedNot QuantifiedNot SpecifiedNot SpecifiedNormal details
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDDB11682
Phenol Explorer Compound IDNot Available
FooDB IDNot Available
KNApSAcK IDNot Available
Chemspider ID33427356
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkDaprodustat
METLIN IDNot Available
PubChem Compound91617630
PDB IDNot Available
ChEBI IDNot Available
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General References
  1. Barupal DK, Fiehn O: Generating the Blood Exposome Database Using a Comprehensive Text Mining and Database Fusion Approach. Environ Health Perspect. 2019 Sep;127(9):97008. doi: 10.1289/EHP4713. Epub 2019 Sep 26. [PubMed:31557052 ]