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Record Information
Version5.0
StatusDetected but not Quantified
Creation Date2021-09-11 10:36:05 UTC
Update Date2021-09-26 23:05:22 UTC
HMDB IDHMDB0252659
Secondary Accession NumbersNone
Metabolite Identification
Common NamePictilisib
DescriptionPictilisib, also known as GDC0941, belongs to the class of organic compounds known as purine nucleotide sugars. These are purine nucleotides bound to a saccharide derivative through the terminal phosphate group. Based on a literature review very few articles have been published on Pictilisib. This compound has been identified in human blood as reported by (PMID: 31557052 ). Pictilisib is not a naturally occurring metabolite and is only found in those individuals exposed to this compound or its derivatives. Technically Pictilisib is part of the human exposome. The exposome can be defined as the collection of all the exposures of an individual in a lifetime and how those exposures relate to health. An individual's exposure begins before birth and includes insults from environmental and occupational sources.
Structure
Thumb
Synonyms
ValueSource
GDC0941ChEBI
PictrelisibKegg
2-(1H-Indazol-4-yl)-6-(4-methanesulfonylpiperazin-1-ylmethyl)-4-morpholin-4-ylthieno(3,2-D)pyrimidineMeSH
PictilisibMeSH
Chemical FormulaC23H27N7O3S2
Average Molecular Weight513.636
Monoisotopic Molecular Weight513.161679145
IUPAC Name4-{6-[(4-methanesulfonylpiperazin-1-yl)methyl]-4-(morpholin-4-yl)thieno[3,2-d]pyrimidin-2-yl}-1H-indazole
Traditional Name4-{6-[(4-methanesulfonylpiperazin-1-yl)methyl]-4-(morpholin-4-yl)thieno[3,2-d]pyrimidin-2-yl}-1H-indazole
CAS Registry NumberNot Available
SMILES
CS(=O)(=O)N1CCN(CC2=CC3=C(S2)C(=NC(=N3)C2=C3C=NNC3=CC=C2)N2CCOCC2)CC1
InChI Identifier
InChI=1S/C23H27N7O3S2/c1-35(31,32)30-7-5-28(6-8-30)15-16-13-20-21(34-16)23(29-9-11-33-12-10-29)26-22(25-20)17-3-2-4-19-18(17)14-24-27-19/h2-4,13-14H,5-12,15H2,1H3,(H,24,27)
InChI KeyLHNIIDJUOCFXAP-UHFFFAOYSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as purine nucleotide sugars. These are purine nucleotides bound to a saccharide derivative through the terminal phosphate group.
KingdomOrganic compounds
Super ClassNucleosides, nucleotides, and analogues
ClassPurine nucleotides
Sub ClassPurine nucleotide sugars
Direct ParentPurine nucleotide sugars
Alternative Parents
Substituents
  • Purine nucleotide sugar
  • Purine ribonucleoside diphosphate
  • Purine ribonucleoside monophosphate
  • Pentose phosphate
  • Pentose-5-phosphate
  • Glycosyl compound
  • N-glycosyl compound
  • 6-oxopurine
  • Hypoxanthine
  • Monosaccharide phosphate
  • Organic pyrophosphate
  • Imidazopyrimidine
  • Purine
  • Aminopyrimidine
  • Monoalkyl phosphate
  • Pyrimidone
  • Pyrimidine
  • Monosaccharide
  • N-substituted imidazole
  • Organic phosphoric acid derivative
  • Oxane
  • Phosphoric acid ester
  • Alkyl phosphate
  • Tetrahydrofuran
  • Vinylogous amide
  • Azole
  • Imidazole
  • Heteroaromatic compound
  • Secondary alcohol
  • Organoheterocyclic compound
  • Azacycle
  • Polyol
  • Oxacycle
  • Hydrocarbon derivative
  • Organooxygen compound
  • Organic oxide
  • Organopnictogen compound
  • Alcohol
  • Primary amine
  • Organonitrogen compound
  • Amine
  • Organic oxygen compound
  • Organic nitrogen compound
  • Aromatic heteropolycyclic compound
Molecular FrameworkAromatic heteropolycyclic compounds
External DescriptorsNot Available
Ontology
Physiological effectNot Available
Disposition
ProcessNot Available
RoleNot Available
Physical Properties
StateNot Available
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
logP2.24ALOGPS
logP2.46ChemAxon
logS-3.9ALOGPS
pKa (Strongest Acidic)13.19ChemAxon
pKa (Strongest Basic)6.26ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count8ChemAxon
Hydrogen Donor Count1ChemAxon
Polar Surface Area107.55 ŲChemAxon
Rotatable Bond Count4ChemAxon
Refractivity147.18 m³·mol⁻¹ChemAxon
Polarizability54.31 ųChemAxon
Number of Rings6ChemAxon
BioavailabilityYesChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
DeepCCS[M+H]+218.32230932474
DeepCCS[M-H]-215.92730932474
DeepCCS[M-2H]-248.81230932474
DeepCCS[M+Na]+224.23530932474
AllCCS[M+H]+215.332859911
AllCCS[M+H-H2O]+213.732859911
AllCCS[M+NH4]+216.832859911
AllCCS[M+Na]+217.332859911
AllCCS[M-H]-203.132859911
AllCCS[M+Na-2H]-203.932859911
AllCCS[M+HCOO]-204.832859911

Predicted Kovats Retention Indices

Underivatized

MetaboliteSMILESKovats RI ValueColumn TypeReference
PictilisibCS(=O)(=O)N1CCN(CC2=CC3=C(S2)C(=NC(=N3)C2=C3C=NNC3=CC=C2)N2CCOCC2)CC15548.1Standard polar33892256
PictilisibCS(=O)(=O)N1CCN(CC2=CC3=C(S2)C(=NC(=N3)C2=C3C=NNC3=CC=C2)N2CCOCC2)CC14369.0Standard non polar33892256
PictilisibCS(=O)(=O)N1CCN(CC2=CC3=C(S2)C(=NC(=N3)C2=C3C=NNC3=CC=C2)N2CCOCC2)CC15099.7Semi standard non polar33892256

Derivatized

Derivative Name / StructureSMILESKovats RI ValueColumn TypeReference
Pictilisib,1TMS,isomer #1C[Si](C)(C)N1N=CC2=C(C3=NC(N4CCOCC4)=C4SC(CN5CCN(S(C)(=O)=O)CC5)=CC4=N3)C=CC=C214737.2Semi standard non polar33892256
Pictilisib,1TMS,isomer #1C[Si](C)(C)N1N=CC2=C(C3=NC(N4CCOCC4)=C4SC(CN5CCN(S(C)(=O)=O)CC5)=CC4=N3)C=CC=C214495.3Standard non polar33892256
Pictilisib,1TMS,isomer #1C[Si](C)(C)N1N=CC2=C(C3=NC(N4CCOCC4)=C4SC(CN5CCN(S(C)(=O)=O)CC5)=CC4=N3)C=CC=C216803.3Standard polar33892256
Pictilisib,1TBDMS,isomer #1CC(C)(C)[Si](C)(C)N1N=CC2=C(C3=NC(N4CCOCC4)=C4SC(CN5CCN(S(C)(=O)=O)CC5)=CC4=N3)C=CC=C214796.8Semi standard non polar33892256
Pictilisib,1TBDMS,isomer #1CC(C)(C)[Si](C)(C)N1N=CC2=C(C3=NC(N4CCOCC4)=C4SC(CN5CCN(S(C)(=O)=O)CC5)=CC4=N3)C=CC=C214750.9Standard non polar33892256
Pictilisib,1TBDMS,isomer #1CC(C)(C)[Si](C)(C)N1N=CC2=C(C3=NC(N4CCOCC4)=C4SC(CN5CCN(S(C)(=O)=O)CC5)=CC4=N3)C=CC=C216692.9Standard polar33892256
Spectra

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Pictilisib 10V, Positive-QTOFsplash10-03di-0100390000-29e9ae729b3ac36450052017-07-26Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Pictilisib 20V, Positive-QTOFsplash10-0f7a-7305920000-12fc8610fdfb3059a1eb2017-07-26Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Pictilisib 40V, Positive-QTOFsplash10-00ks-9414200000-b2378bf81e3a6c67193c2017-07-26Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Pictilisib 10V, Negative-QTOFsplash10-03fr-8011190000-79d9a4864a912b66c32c2017-07-26Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Pictilisib 20V, Negative-QTOFsplash10-004i-9100210000-430c0ba34267e408f7c12017-07-26Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Pictilisib 40V, Negative-QTOFsplash10-004i-9011000000-9f1b28839ab305b040472017-07-26Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Pictilisib 10V, Positive-QTOFsplash10-03di-0000090000-f601c59cc1644b48a63e2021-10-12Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Pictilisib 20V, Positive-QTOFsplash10-03di-0001190000-88de4b809125d21267332021-10-12Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Pictilisib 40V, Positive-QTOFsplash10-0f84-0007900000-13c35b97a2ae61c59ce32021-10-12Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Pictilisib 10V, Negative-QTOFsplash10-03di-0000090000-f487f22d4d0b7dc1c4742021-10-12Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Pictilisib 20V, Negative-QTOFsplash10-03di-0000590000-063a204c4f074d7a9e472021-10-12Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Pictilisib 40V, Negative-QTOFsplash10-02t9-4914820000-20d0f5ce2ead953cfc962021-10-12Wishart LabView Spectrum
Biological Properties
Cellular LocationsNot Available
Biospecimen Locations
  • Blood
Tissue LocationsNot Available
Pathways
Normal Concentrations
BiospecimenStatusValueAgeSexConditionReferenceDetails
BloodDetected but not QuantifiedNot QuantifiedNot SpecifiedNot SpecifiedNormal details
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDDB11663
Phenol Explorer Compound IDNot Available
FooDB IDNot Available
KNApSAcK IDNot Available
Chemspider ID21437049
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkPhosphoinositide 3-kinase inhibitor
METLIN IDNot Available
PubChem Compound17755052
PDB IDNot Available
ChEBI ID65326
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General References
  1. Barupal DK, Fiehn O: Generating the Blood Exposome Database Using a Comprehensive Text Mining and Database Fusion Approach. Environ Health Perspect. 2019 Sep;127(9):97008. doi: 10.1289/EHP4713. Epub 2019 Sep 26. [PubMed:31557052 ]