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Record Information

Version

5.0

Status

Detected but not Quantified

Creation Date

2021-09-11 13:14:23 UTC

Update Date

2021-09-26 23:07:52 UTC

HMDB ID

HMDB0254093

Secondary Accession Numbers

None

Metabolite Identification

Common Name

Limaprost

Description

Limaprost belongs to the class of organic compounds known as long-chain fatty acids. These are fatty acids with an aliphatic tail that contains between 13 and 21 carbon atoms. Based on a literature review a significant number of articles have been published on Limaprost. This compound has been identified in human blood as reported by (PMID: 31557052 ). Limaprost is not a naturally occurring metabolite and is only found in those individuals exposed to this compound or its derivatives. Technically Limaprost is part of the human exposome. The exposome can be defined as the collection of all the exposures of an individual in a lifetime and how those exposures relate to health. An individual's exposure begins before birth and includes insults from environmental and occupational sources.

Structure

MOL 3D MOL SDF 3D SDF PDB 3D PDB SMILES InChI

  Mrv1652309112115142D          

 27 27  0  0  0  0            999 V2000
   -2.9159   -1.2082    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0909   -1.2082    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6784   -1.9227    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8534   -1.9227    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4409   -2.6372    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8534   -3.3516    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3841   -2.6372    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7966   -1.9227    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3841   -1.2082    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7966   -0.4938    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3841    0.2207    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4364    0.3070    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6080    1.1139    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1065    1.5264    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1928    2.3469    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.7196    0.9744    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5266    1.1459    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0786    0.5328    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8856    0.7044    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4376    0.0913    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2446    0.2628    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.7966   -0.3503    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.6036   -0.1788    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.1556   -0.7919    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.8585    0.6058    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9885   -0.3061    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.6216   -1.9227    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  5  7  1  0  0  0  0
  7  8  1  0  0  0  0
  9  8  1  4  0  0  0
  9 10  2  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  2  0  0  0  0
 14 16  1  0  0  0  0
 11 16  1  0  0  0  0
 16 17  1  0  0  0  0
 17 18  1  0  0  0  0
 18 19  1  0  0  0  0
 19 20  1  0  0  0  0
 21 20  1  4  0  0  0
 21 22  2  0  0  0  0
 22 23  1  0  0  0  0
 23 24  2  0  0  0  0
 23 25  1  0  0  0  0
 12 26  1  0  0  0  0
  8 27  1  0  0  0  0
M  END

HMDB0254093
     RDKit          3D
Limaprost
 63 63  0  0  0  0  0  0  0  0999 V2000
   -6.9361    2.1941    2.1034 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.3736    1.4240    0.9008 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4521    0.3472    1.3279 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9048   -0.4729    0.2344 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0917    0.1126   -0.8281 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7334    1.1827   -1.6801 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5401   -0.9075   -1.7839 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6397   -1.9579   -1.2477 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1722   -2.7914   -0.3076 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3875   -1.3553   -0.6491 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1775   -1.7347   -1.0355 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0653   -1.1473   -0.4521 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8920   -2.2948    0.0443 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0769   -3.3424    0.5086 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.5746   -2.7793   -1.2248 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7751   -1.5389   -2.0176 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5912   -1.4241   -2.9079 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.8443   -0.5091   -1.5520 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5163    0.7790   -1.1675 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4978    0.5985   -0.0335 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1673    1.9028    0.3399 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.1282    1.5525    1.4987 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.8456    2.7271    1.9615 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.1255    2.8979    1.9642 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.1315    1.9741    1.5134 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.3819    2.2981    1.5848 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.8067    0.7387    1.0006 O   0  0  0  0  0  0  0  0  0  0  0  0
   -7.1056    1.4993    2.9520 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.2504    3.0192    2.3388 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.8898    2.6446    1.7586 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.9385    2.2140    0.2559 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.2320    0.9863    0.3622 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6847    0.6884    2.0680 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.0843   -0.3584    1.9620 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.7750   -1.0830   -0.1751 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2833   -1.2947    0.7291 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1668    0.5799   -0.3552 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4138    0.9689   -2.7536 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4209    2.2031   -1.4588 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.8227    0.9972   -1.7083 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9493   -0.3930   -2.6132 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3992   -1.3514   -2.3512 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2863   -2.5409   -2.1634 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4980   -3.0894    0.3644 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4594   -0.5949    0.1143 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1227   -2.5026   -1.8063 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.7809   -0.4402    0.3550 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.5869   -2.0647    0.8495 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4807   -3.0604    1.2339 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.8257   -3.3884   -1.7695 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.5045   -3.3247   -1.0183 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.1261   -0.2438   -2.3723 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.7499    1.5223   -0.9513 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.0920    1.1256   -2.0486 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.2737   -0.1173   -0.2961 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.8936    0.3090    0.8691 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.4207    2.6428    0.7180 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.7438    2.3159   -0.4969 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.6987    0.7024    1.1665 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.4139    1.2504    2.3417 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.2080    3.5807    2.3618 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.4934    3.8772    2.3631 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.4784   -0.0127    1.0791 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  4  5  1  0
  5  6  1  0
  5  7  1  0
  7  8  1  0
  8  9  1  0
  8 10  1  0
 10 11  2  3
 11 12  1  0
 12 13  1  0
 13 14  1  0
 13 15  1  0
 15 16  1  0
 16 17  2  0
 16 18  1  0
 18 19  1  0
 19 20  1  0
 20 21  1  0
 21 22  1  0
 22 23  1  0
 23 24  2  3
 24 25  1  0
 25 26  2  0
 25 27  1  0
 18 12  1  0
  1 28  1  0
  1 29  1  0
  1 30  1  0
  2 31  1  0
  2 32  1  0
  3 33  1  0
  3 34  1  0
  4 35  1  0
  4 36  1  0
  5 37  1  0
  6 38  1  0
  6 39  1  0
  6 40  1  0
  7 41  1  0
  7 42  1  0
  8 43  1  0
  9 44  1  0
 10 45  1  0
 11 46  1  0
 12 47  1  0
 13 48  1  0
 14 49  1  0
 15 50  1  0
 15 51  1  0
 18 52  1  0
 19 53  1  0
 19 54  1  0
 20 55  1  0
 20 56  1  0
 21 57  1  0
 21 58  1  0
 22 59  1  0
 22 60  1  0
 23 61  1  0
 24 62  1  0
 27 63  1  0
M  END

  Mrv1652309112115142D          

 27 27  0  0  0  0            999 V2000
   -2.9159   -1.2082    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0909   -1.2082    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6784   -1.9227    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8534   -1.9227    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4409   -2.6372    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8534   -3.3516    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3841   -2.6372    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7966   -1.9227    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3841   -1.2082    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7966   -0.4938    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3841    0.2207    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4364    0.3070    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6080    1.1139    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1065    1.5264    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1928    2.3469    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.7196    0.9744    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5266    1.1459    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0786    0.5328    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8856    0.7044    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4376    0.0913    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2446    0.2628    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.7966   -0.3503    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.6036   -0.1788    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.1556   -0.7919    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.8585    0.6058    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9885   -0.3061    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.6216   -1.9227    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  5  7  1  0  0  0  0
  7  8  1  0  0  0  0
  9  8  1  4  0  0  0
  9 10  2  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  2  0  0  0  0
 14 16  1  0  0  0  0
 11 16  1  0  0  0  0
 16 17  1  0  0  0  0
 17 18  1  0  0  0  0
 18 19  1  0  0  0  0
 19 20  1  0  0  0  0
 21 20  1  4  0  0  0
 21 22  2  0  0  0  0
 22 23  1  0  0  0  0
 23 24  2  0  0  0  0
 23 25  1  0  0  0  0
 12 26  1  0  0  0  0
  8 27  1  0  0  0  0
M  END
> <DATABASE_ID>
HMDB0254093

> <DATABASE_NAME>
hmdb

> <SMILES>
CCCCC(C)CC(O)C=CC1C(O)CC(=O)C1CCCCC=CC(O)=O

> <INCHI_IDENTIFIER>
InChI=1S/C22H36O5/c1-3-4-9-16(2)14-17(23)12-13-19-18(20(24)15-21(19)25)10-7-5-6-8-11-22(26)27/h8,11-13,16-19,21,23,25H,3-7,9-10,14-15H2,1-2H3,(H,26,27)

> <INCHI_KEY>
OJZYRQPMEIEQFC-UHFFFAOYSA-N

> <FORMULA>
C22H36O5

> <MOLECULAR_WEIGHT>
380.525

> <EXACT_MASS>
380.256274259

> <JCHEM_ACCEPTOR_COUNT>
5

> <JCHEM_ATOM_COUNT>
63

> <JCHEM_AVERAGE_POLARIZABILITY>
45.252267041531475

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
3

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
7-[3-hydroxy-2-(3-hydroxy-5-methylnon-1-en-1-yl)-5-oxocyclopentyl]hept-2-enoic acid

> <ALOGPS_LOGP>
4.03

> <JCHEM_LOGP>
4.316603044666667

> <ALOGPS_LOGS>
-4.19

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
1

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-1

> <JCHEM_PKA>
14.680474089166317

> <JCHEM_PKA_STRONGEST_ACIDIC>
4.443187933160858

> <JCHEM_PKA_STRONGEST_BASIC>
-1.4858760815986902

> <JCHEM_POLAR_SURFACE_AREA>
94.83000000000001

> <JCHEM_REFRACTIVITY>
108.56139999999999

> <JCHEM_ROTATABLE_BOND_COUNT>
13

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
2.48e-02 g/l

> <JCHEM_TRADITIONAL_IUPAC>
7-[3-hydroxy-2-(3-hydroxy-5-methylnon-1-en-1-yl)-5-oxocyclopentyl]hept-2-enoic acid

> <JCHEM_VEBER_RULE>
0

$$$$

HMDB0254093
     RDKit          3D
Limaprost
 63 63  0  0  0  0  0  0  0  0999 V2000
   -6.9361    2.1941    2.1034 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.3736    1.4240    0.9008 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4521    0.3472    1.3279 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9048   -0.4729    0.2344 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0917    0.1126   -0.8281 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7334    1.1827   -1.6801 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5401   -0.9075   -1.7839 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6397   -1.9579   -1.2477 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1722   -2.7914   -0.3076 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3875   -1.3553   -0.6491 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1775   -1.7347   -1.0355 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0653   -1.1473   -0.4521 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8920   -2.2948    0.0443 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0769   -3.3424    0.5086 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.5746   -2.7793   -1.2248 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7751   -1.5389   -2.0176 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5912   -1.4241   -2.9079 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.8443   -0.5091   -1.5520 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5163    0.7790   -1.1675 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4978    0.5985   -0.0335 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1673    1.9028    0.3399 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.1282    1.5525    1.4987 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.8456    2.7271    1.9615 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.1255    2.8979    1.9642 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.1315    1.9741    1.5134 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.3819    2.2981    1.5848 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.8067    0.7387    1.0006 O   0  0  0  0  0  0  0  0  0  0  0  0
   -7.1056    1.4993    2.9520 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.2504    3.0192    2.3388 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.8898    2.6446    1.7586 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.9385    2.2140    0.2559 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.2320    0.9863    0.3622 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6847    0.6884    2.0680 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.0843   -0.3584    1.9620 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.7750   -1.0830   -0.1751 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2833   -1.2947    0.7291 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1668    0.5799   -0.3552 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4138    0.9689   -2.7536 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4209    2.2031   -1.4588 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.8227    0.9972   -1.7083 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9493   -0.3930   -2.6132 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3992   -1.3514   -2.3512 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2863   -2.5409   -2.1634 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4980   -3.0894    0.3644 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4594   -0.5949    0.1143 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1227   -2.5026   -1.8063 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.7809   -0.4402    0.3550 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.5869   -2.0647    0.8495 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4807   -3.0604    1.2339 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.8257   -3.3884   -1.7695 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.5045   -3.3247   -1.0183 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.1261   -0.2438   -2.3723 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.7499    1.5223   -0.9513 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.0920    1.1256   -2.0486 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.2737   -0.1173   -0.2961 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.8936    0.3090    0.8691 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.4207    2.6428    0.7180 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.7438    2.3159   -0.4969 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.6987    0.7024    1.1665 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.4139    1.2504    2.3417 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.2080    3.5807    2.3618 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.4934    3.8772    2.3631 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.4784   -0.0127    1.0791 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  4  5  1  0
  5  6  1  0
  5  7  1  0
  7  8  1  0
  8  9  1  0
  8 10  1  0
 10 11  2  3
 11 12  1  0
 12 13  1  0
 13 14  1  0
 13 15  1  0
 15 16  1  0
 16 17  2  0
 16 18  1  0
 18 19  1  0
 19 20  1  0
 20 21  1  0
 21 22  1  0
 22 23  1  0
 23 24  2  3
 24 25  1  0
 25 26  2  0
 25 27  1  0
 18 12  1  0
  1 28  1  0
  1 29  1  0
  1 30  1  0
  2 31  1  0
  2 32  1  0
  3 33  1  0
  3 34  1  0
  4 35  1  0
  4 36  1  0
  5 37  1  0
  6 38  1  0
  6 39  1  0
  6 40  1  0
  7 41  1  0
  7 42  1  0
  8 43  1  0
  9 44  1  0
 10 45  1  0
 11 46  1  0
 12 47  1  0
 13 48  1  0
 14 49  1  0
 15 50  1  0
 15 51  1  0
 18 52  1  0
 19 53  1  0
 19 54  1  0
 20 55  1  0
 20 56  1  0
 21 57  1  0
 21 58  1  0
 22 59  1  0
 22 60  1  0
 23 61  1  0
 24 62  1  0
 27 63  1  0
M  END

HEADER    PROTEIN                                 11-SEP-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   11-SEP-21         0                                  
HETATM    1  C   UNK     0      -5.443  -2.255   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      -3.903  -2.255   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0      -3.133  -3.589   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0      -1.593  -3.589   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0      -0.823  -4.923   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0      -1.593  -6.256   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       0.717  -4.923   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       1.487  -3.589   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       0.717  -2.255   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       1.487  -0.922   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       0.717   0.412   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0      -0.815   0.573   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0      -1.135   2.079   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       0.199   2.849   0.000  0.00  0.00           C+0
HETATM   15  O   UNK     0       0.360   4.381   0.000  0.00  0.00           O+0
HETATM   16  C   UNK     0       1.343   1.819   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       2.850   2.139   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       3.880   0.995   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0       5.386   1.315   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0       6.417   0.170   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0       7.923   0.491   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0       8.954  -0.654   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0      10.460  -0.334   0.000  0.00  0.00           C+0
HETATM   24  O   UNK     0      11.491  -1.478   0.000  0.00  0.00           O+0
HETATM   25  O   UNK     0      10.936   1.131   0.000  0.00  0.00           O+0
HETATM   26  O   UNK     0      -1.845  -0.571   0.000  0.00  0.00           O+0
HETATM   27  O   UNK     0       3.027  -3.589   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4                                                       
CONECT    4    3    5                                                       
CONECT    5    4    6    7                                                  
CONECT    6    5                                                            
CONECT    7    5    8                                                       
CONECT    8    7    9   27                                                  
CONECT    9    8   10                                                       
CONECT   10    9   11                                                       
CONECT   11   10   12   16                                                  
CONECT   12   11   13   26                                                  
CONECT   13   12   14                                                       
CONECT   14   13   15   16                                                  
CONECT   15   14                                                            
CONECT   16   14   11   17                                                  
CONECT   17   16   18                                                       
CONECT   18   17   19                                                       
CONECT   19   18   20                                                       
CONECT   20   19   21                                                       
CONECT   21   20   22                                                       
CONECT   22   21   23                                                       
CONECT   23   22   24   25                                                  
CONECT   24   23                                                            
CONECT   25   23                                                            
CONECT   26   12                                                            
CONECT   27    8                                                            
MASTER        0    0    0    0    0    0    0    0   27    0   54    0
END

COMPND    HMDB0254093
HETATM    1  C1  UNL     1      -6.936   2.194   2.103  1.00  0.00           C  
HETATM    2  C2  UNL     1      -6.374   1.424   0.901  1.00  0.00           C  
HETATM    3  C3  UNL     1      -5.452   0.347   1.328  1.00  0.00           C  
HETATM    4  C4  UNL     1      -4.905  -0.473   0.234  1.00  0.00           C  
HETATM    5  C5  UNL     1      -4.092   0.113  -0.828  1.00  0.00           C  
HETATM    6  C6  UNL     1      -4.733   1.183  -1.680  1.00  0.00           C  
HETATM    7  C7  UNL     1      -3.540  -0.908  -1.784  1.00  0.00           C  
HETATM    8  C8  UNL     1      -2.640  -1.958  -1.248  1.00  0.00           C  
HETATM    9  O1  UNL     1      -3.172  -2.791  -0.308  1.00  0.00           O  
HETATM   10  C9  UNL     1      -1.388  -1.355  -0.649  1.00  0.00           C  
HETATM   11  C10 UNL     1      -0.177  -1.735  -1.036  1.00  0.00           C  
HETATM   12  C11 UNL     1       1.065  -1.147  -0.452  1.00  0.00           C  
HETATM   13  C12 UNL     1       1.892  -2.295   0.044  1.00  0.00           C  
HETATM   14  O2  UNL     1       1.077  -3.342   0.509  1.00  0.00           O  
HETATM   15  C13 UNL     1       2.575  -2.779  -1.225  1.00  0.00           C  
HETATM   16  C14 UNL     1       2.775  -1.539  -2.018  1.00  0.00           C  
HETATM   17  O3  UNL     1       3.591  -1.424  -2.908  1.00  0.00           O  
HETATM   18  C15 UNL     1       1.844  -0.509  -1.552  1.00  0.00           C  
HETATM   19  C16 UNL     1       2.516   0.779  -1.168  1.00  0.00           C  
HETATM   20  C17 UNL     1       3.498   0.598  -0.033  1.00  0.00           C  
HETATM   21  C18 UNL     1       4.167   1.903   0.340  1.00  0.00           C  
HETATM   22  C19 UNL     1       5.128   1.552   1.499  1.00  0.00           C  
HETATM   23  C20 UNL     1       5.846   2.727   1.962  1.00  0.00           C  
HETATM   24  C21 UNL     1       7.126   2.898   1.964  1.00  0.00           C  
HETATM   25  C22 UNL     1       8.131   1.974   1.513  1.00  0.00           C  
HETATM   26  O4  UNL     1       9.382   2.298   1.585  1.00  0.00           O  
HETATM   27  O5  UNL     1       7.807   0.739   1.001  1.00  0.00           O  
HETATM   28  H1  UNL     1      -7.106   1.499   2.952  1.00  0.00           H  
HETATM   29  H2  UNL     1      -6.250   3.019   2.339  1.00  0.00           H  
HETATM   30  H3  UNL     1      -7.890   2.645   1.759  1.00  0.00           H  
HETATM   31  H4  UNL     1      -5.938   2.214   0.256  1.00  0.00           H  
HETATM   32  H5  UNL     1      -7.232   0.986   0.362  1.00  0.00           H  
HETATM   33  H6  UNL     1      -4.685   0.688   2.068  1.00  0.00           H  
HETATM   34  H7  UNL     1      -6.084  -0.358   1.962  1.00  0.00           H  
HETATM   35  H8  UNL     1      -5.775  -1.083  -0.175  1.00  0.00           H  
HETATM   36  H9  UNL     1      -4.283  -1.295   0.729  1.00  0.00           H  
HETATM   37  H10 UNL     1      -3.167   0.580  -0.355  1.00  0.00           H  
HETATM   38  H11 UNL     1      -4.414   0.969  -2.754  1.00  0.00           H  
HETATM   39  H12 UNL     1      -4.421   2.203  -1.459  1.00  0.00           H  
HETATM   40  H13 UNL     1      -5.823   0.997  -1.708  1.00  0.00           H  
HETATM   41  H14 UNL     1      -2.949  -0.393  -2.613  1.00  0.00           H  
HETATM   42  H15 UNL     1      -4.399  -1.351  -2.351  1.00  0.00           H  
HETATM   43  H16 UNL     1      -2.286  -2.541  -2.163  1.00  0.00           H  
HETATM   44  H17 UNL     1      -2.498  -3.089   0.364  1.00  0.00           H  
HETATM   45  H18 UNL     1      -1.459  -0.595   0.114  1.00  0.00           H  
HETATM   46  H19 UNL     1      -0.123  -2.503  -1.806  1.00  0.00           H  
HETATM   47  H20 UNL     1       0.781  -0.440   0.355  1.00  0.00           H  
HETATM   48  H21 UNL     1       2.587  -2.065   0.849  1.00  0.00           H  
HETATM   49  H22 UNL     1       0.481  -3.060   1.234  1.00  0.00           H  
HETATM   50  H23 UNL     1       1.826  -3.388  -1.769  1.00  0.00           H  
HETATM   51  H24 UNL     1       3.505  -3.325  -1.018  1.00  0.00           H  
HETATM   52  H25 UNL     1       1.126  -0.244  -2.372  1.00  0.00           H  
HETATM   53  H26 UNL     1       1.750   1.522  -0.951  1.00  0.00           H  
HETATM   54  H27 UNL     1       3.092   1.126  -2.049  1.00  0.00           H  
HETATM   55  H28 UNL     1       4.274  -0.117  -0.296  1.00  0.00           H  
HETATM   56  H29 UNL     1       2.894   0.309   0.869  1.00  0.00           H  
HETATM   57  H30 UNL     1       3.421   2.643   0.718  1.00  0.00           H  
HETATM   58  H31 UNL     1       4.744   2.316  -0.497  1.00  0.00           H  
HETATM   59  H32 UNL     1       5.699   0.702   1.167  1.00  0.00           H  
HETATM   60  H33 UNL     1       4.414   1.250   2.342  1.00  0.00           H  
HETATM   61  H34 UNL     1       5.208   3.581   2.362  1.00  0.00           H  
HETATM   62  H35 UNL     1       7.493   3.877   2.363  1.00  0.00           H  
HETATM   63  H36 UNL     1       8.478  -0.013   1.079  1.00  0.00           H  
CONECT    1    2   28   29   30
CONECT    2    3   31   32
CONECT    3    4   33   34
CONECT    4    5   35   36
CONECT    5    6    7   37
CONECT    6   38   39   40
CONECT    7    8   41   42
CONECT    8    9   10   43
CONECT    9   44
CONECT   10   11   11   45
CONECT   11   12   46
CONECT   12   13   18   47
CONECT   13   14   15   48
CONECT   14   49
CONECT   15   16   50   51
CONECT   16   17   17   18
CONECT   18   19   52
CONECT   19   20   53   54
CONECT   20   21   55   56
CONECT   21   22   57   58
CONECT   22   23   59   60
CONECT   23   24   24   61
CONECT   24   25   62
CONECT   25   26   26   27
CONECT   27   63
END

HMDB0254093
     RDKit          3D
Limaprost
 63 63  0  0  0  0  0  0  0  0999 V2000
   -6.9361    2.1941    2.1034 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.3736    1.4240    0.9008 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4521    0.3472    1.3279 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9048   -0.4729    0.2344 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0917    0.1126   -0.8281 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7334    1.1827   -1.6801 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5401   -0.9075   -1.7839 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6397   -1.9579   -1.2477 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1722   -2.7914   -0.3076 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3875   -1.3553   -0.6491 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1775   -1.7347   -1.0355 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0653   -1.1473   -0.4521 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8920   -2.2948    0.0443 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0769   -3.3424    0.5086 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.5746   -2.7793   -1.2248 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7751   -1.5389   -2.0176 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5912   -1.4241   -2.9079 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.8443   -0.5091   -1.5520 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5163    0.7790   -1.1675 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4978    0.5985   -0.0335 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1673    1.9028    0.3399 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.1282    1.5525    1.4987 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.8456    2.7271    1.9615 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.1255    2.8979    1.9642 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.1315    1.9741    1.5134 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.3819    2.2981    1.5848 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.8067    0.7387    1.0006 O   0  0  0  0  0  0  0  0  0  0  0  0
   -7.1056    1.4993    2.9520 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.2504    3.0192    2.3388 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.8898    2.6446    1.7586 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.9385    2.2140    0.2559 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.2320    0.9863    0.3622 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6847    0.6884    2.0680 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.0843   -0.3584    1.9620 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.7750   -1.0830   -0.1751 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2833   -1.2947    0.7291 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1668    0.5799   -0.3552 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4138    0.9689   -2.7536 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4209    2.2031   -1.4588 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.8227    0.9972   -1.7083 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9493   -0.3930   -2.6132 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3992   -1.3514   -2.3512 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2863   -2.5409   -2.1634 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4980   -3.0894    0.3644 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4594   -0.5949    0.1143 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1227   -2.5026   -1.8063 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.7809   -0.4402    0.3550 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.5869   -2.0647    0.8495 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4807   -3.0604    1.2339 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.8257   -3.3884   -1.7695 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.5045   -3.3247   -1.0183 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.1261   -0.2438   -2.3723 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.7499    1.5223   -0.9513 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.0920    1.1256   -2.0486 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.2737   -0.1173   -0.2961 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.8936    0.3090    0.8691 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.4207    2.6428    0.7180 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.7438    2.3159   -0.4969 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.6987    0.7024    1.1665 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.4139    1.2504    2.3417 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.2080    3.5807    2.3618 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.4934    3.8772    2.3631 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.4784   -0.0127    1.0791 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  4  5  1  0
  5  6  1  0
  5  7  1  0
  7  8  1  0
  8  9  1  0
  8 10  1  0
 10 11  2  3
 11 12  1  0
 12 13  1  0
 13 14  1  0
 13 15  1  0
 15 16  1  0
 16 17  2  0
 16 18  1  0
 18 19  1  0
 19 20  1  0
 20 21  1  0
 21 22  1  0
 22 23  1  0
 23 24  2  3
 24 25  1  0
 25 26  2  0
 25 27  1  0
 18 12  1  0
  1 28  1  0
  1 29  1  0
  1 30  1  0
  2 31  1  0
  2 32  1  0
  3 33  1  0
  3 34  1  0
  4 35  1  0
  4 36  1  0
  5 37  1  0
  6 38  1  0
  6 39  1  0
  6 40  1  0
  7 41  1  0
  7 42  1  0
  8 43  1  0
  9 44  1  0
 10 45  1  0
 11 46  1  0
 12 47  1  0
 13 48  1  0
 14 49  1  0
 15 50  1  0
 15 51  1  0
 18 52  1  0
 19 53  1  0
 19 54  1  0
 20 55  1  0
 20 56  1  0
 21 57  1  0
 21 58  1  0
 22 59  1  0
 22 60  1  0
 23 61  1  0
 24 62  1  0
 27 63  1  0
M  END

View in JSmol View Stereo Labels

Synonyms

Value	Source
7-[3-Hydroxy-2-(3-hydroxy-5-methylnon-1-en-1-yl)-5-oxocyclopentyl]hept-2-enoate	HMDB

Chemical Formula

C₂₂H₃₆O₅

Average Molecular Weight

380.525

Monoisotopic Molecular Weight

380.256274259

IUPAC Name

7-[3-hydroxy-2-(3-hydroxy-5-methylnon-1-en-1-yl)-5-oxocyclopentyl]hept-2-enoic acid

Traditional Name

7-[3-hydroxy-2-(3-hydroxy-5-methylnon-1-en-1-yl)-5-oxocyclopentyl]hept-2-enoic acid

CAS Registry Number

Not Available

SMILES

CCCCC(C)CC(O)C=CC1C(O)CC(=O)C1CCCCC=CC(O)=O

InChI Identifier

InChI=1S/C22H36O5/c1-3-4-9-16(2)14-17(23)12-13-19-18(20(24)15-21(19)25)10-7-5-6-8-11-22(26)27/h8,11-13,16-19,21,23,25H,3-7,9-10,14-15H2,1-2H3,(H,26,27)

InChI Key

OJZYRQPMEIEQFC-UHFFFAOYSA-N

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as long-chain fatty acids. These are fatty acids with an aliphatic tail that contains between 13 and 21 carbon atoms.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Fatty Acyls

Sub Class

Fatty acids and conjugates

Direct Parent

Long-chain fatty acids

Alternative Parents

Substituents

Long-chain fatty acid
Branched fatty acid
Hydroxy fatty acid
Cyclopentanol
Unsaturated fatty acid
Cyclic alcohol
Cyclic ketone
Ketone
Secondary alcohol
Carboxylic acid
Carboxylic acid derivative
Monocarboxylic acid or derivatives
Alcohol
Hydrocarbon derivative
Organic oxide
Carbonyl group
Organic oxygen compound
Organooxygen compound
Aliphatic homomonocyclic compound

Molecular Framework

Aliphatic homomonocyclic compounds

External Descriptors

Not Available

Ontology

Physiological effect

Not Available

Disposition

Biological location

Non-excretory biofluid

Biofluid or Excreta

Blood (PMID: 31557052)

Source

Exogenous

Exogenous (HMDB: HMDB0254093)

Process

Not Available

Role

Not Available

Physical Properties

State

Not Available

Experimental Molecular Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Experimental Chromatographic Properties

Not Available

Predicted Molecular Properties

Property	Value	Source
logP	4.03	ALOGPS
logP	4.32	ChemAxon
logS	-4.2	ALOGPS
pKa (Strongest Acidic)	4.44	ChemAxon
pKa (Strongest Basic)	-1.5	ChemAxon
Physiological Charge	-1	ChemAxon
Hydrogen Acceptor Count	5	ChemAxon
Hydrogen Donor Count	3	ChemAxon
Polar Surface Area	94.83 Å²	ChemAxon
Rotatable Bond Count	13	ChemAxon
Refractivity	108.56 m³·mol⁻¹	ChemAxon
Polarizability	45.25 Å³	ChemAxon
Number of Rings	1	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

Predicted Chromatographic Properties

Predicted Collision Cross Sections

Predictor	Adduct Type	CCS Value (Å²)	Reference
DeepCCS	[M+H]+	201.976	30932474
DeepCCS	[M-H]-	199.618	30932474
DeepCCS	[M-2H]-	232.504	30932474
DeepCCS	[M+Na]+	208.069	30932474

Predicted Kovats Retention Indices

Underivatized

Metabolite	SMILES	Kovats RI Value	Column Type	Reference
Limaprost	CCCCC(C)CC(O)C=CC1C(O)CC(=O)C1CCCCC=CC(O)=O	4913.4	Standard polar	33892256
Limaprost	CCCCC(C)CC(O)C=CC1C(O)CC(=O)C1CCCCC=CC(O)=O	2733.2	Standard non polar	33892256
Limaprost	CCCCC(C)CC(O)C=CC1C(O)CC(=O)C1CCCCC=CC(O)=O	2970.2	Semi standard non polar	33892256

Derivatized

Derivative Name / Structure	SMILES	Kovats RI Value	Column Type	Reference
Limaprost,4TMS,isomer #1	CCCCC(C)CC(C=CC1C(CCCCC=CC(=O)O[Si](C)(C)C)=C(O[Si](C)(C)C)CC1O[Si](C)(C)C)O[Si](C)(C)C	2929.6	Semi standard non polar	33892256
Limaprost,4TMS,isomer #1	CCCCC(C)CC(C=CC1C(CCCCC=CC(=O)O[Si](C)(C)C)=C(O[Si](C)(C)C)CC1O[Si](C)(C)C)O[Si](C)(C)C	3059.8	Standard non polar	33892256
Limaprost,4TMS,isomer #1	CCCCC(C)CC(C=CC1C(CCCCC=CC(=O)O[Si](C)(C)C)=C(O[Si](C)(C)C)CC1O[Si](C)(C)C)O[Si](C)(C)C	3054.6	Standard polar	33892256
Limaprost,4TMS,isomer #2	CCCCC(C)CC(C=CC1C(O[Si](C)(C)C)C=C(O[Si](C)(C)C)C1CCCCC=CC(=O)O[Si](C)(C)C)O[Si](C)(C)C	2961.5	Semi standard non polar	33892256
Limaprost,4TMS,isomer #2	CCCCC(C)CC(C=CC1C(O[Si](C)(C)C)C=C(O[Si](C)(C)C)C1CCCCC=CC(=O)O[Si](C)(C)C)O[Si](C)(C)C	3022.8	Standard non polar	33892256
Limaprost,4TMS,isomer #2	CCCCC(C)CC(C=CC1C(O[Si](C)(C)C)C=C(O[Si](C)(C)C)C1CCCCC=CC(=O)O[Si](C)(C)C)O[Si](C)(C)C	3134.1	Standard polar	33892256
Limaprost,4TBDMS,isomer #1	CCCCC(C)CC(C=CC1C(CCCCC=CC(=O)O[Si](C)(C)C(C)(C)C)=C(O[Si](C)(C)C(C)(C)C)CC1O[Si](C)(C)C(C)(C)C)O[Si](C)(C)C(C)(C)C	3826.1	Semi standard non polar	33892256
Limaprost,4TBDMS,isomer #1	CCCCC(C)CC(C=CC1C(CCCCC=CC(=O)O[Si](C)(C)C(C)(C)C)=C(O[Si](C)(C)C(C)(C)C)CC1O[Si](C)(C)C(C)(C)C)O[Si](C)(C)C(C)(C)C	3738.2	Standard non polar	33892256
Limaprost,4TBDMS,isomer #1	CCCCC(C)CC(C=CC1C(CCCCC=CC(=O)O[Si](C)(C)C(C)(C)C)=C(O[Si](C)(C)C(C)(C)C)CC1O[Si](C)(C)C(C)(C)C)O[Si](C)(C)C(C)(C)C	3297.6	Standard polar	33892256
Limaprost,4TBDMS,isomer #2	CCCCC(C)CC(C=CC1C(O[Si](C)(C)C(C)(C)C)C=C(O[Si](C)(C)C(C)(C)C)C1CCCCC=CC(=O)O[Si](C)(C)C(C)(C)C)O[Si](C)(C)C(C)(C)C	3869.3	Semi standard non polar	33892256
Limaprost,4TBDMS,isomer #2	CCCCC(C)CC(C=CC1C(O[Si](C)(C)C(C)(C)C)C=C(O[Si](C)(C)C(C)(C)C)C1CCCCC=CC(=O)O[Si](C)(C)C(C)(C)C)O[Si](C)(C)C(C)(C)C	3648.0	Standard non polar	33892256
Limaprost,4TBDMS,isomer #2	CCCCC(C)CC(C=CC1C(O[Si](C)(C)C(C)(C)C)C=C(O[Si](C)(C)C(C)(C)C)C1CCCCC=CC(=O)O[Si](C)(C)C(C)(C)C)O[Si](C)(C)C(C)(C)C	3350.5	Standard polar	33892256

Spectra

GC-MS Spectra

Spectrum Type	Description	Splash Key	Deposition Date	Source	View
Predicted GC-MS	Predicted GC-MS Spectrum - Limaprost GC-MS (Non-derivatized) - 70eV, Positive	splash10-06ri-6429000000-524d758fc06497432ddb	2021-09-23	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - Limaprost GC-MS (Non-derivatized) - 70eV, Positive	Not Available	2021-10-12	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - Limaprost GC-MS (TMS_1_1) - 70eV, Positive	Not Available	2021-11-04	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - Limaprost GC-MS (TMS_1_2) - 70eV, Positive	Not Available	2021-11-04	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - Limaprost GC-MS (TMS_1_3) - 70eV, Positive	Not Available	2021-11-04	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - Limaprost GC-MS (TMS_1_4) - 70eV, Positive	Not Available	2021-11-04	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - Limaprost GC-MS (TMS_1_5) - 70eV, Positive	Not Available	2021-11-04	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - Limaprost GC-MS (TMS_2_1) - 70eV, Positive	Not Available	2021-11-04	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - Limaprost GC-MS (TMS_2_2) - 70eV, Positive	Not Available	2021-11-04	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - Limaprost GC-MS (TMS_2_3) - 70eV, Positive	Not Available	2021-11-04	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - Limaprost GC-MS (TMS_2_4) - 70eV, Positive	Not Available	2021-11-04	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - Limaprost GC-MS (TMS_2_5) - 70eV, Positive	Not Available	2021-11-04	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - Limaprost GC-MS (TMS_2_6) - 70eV, Positive	Not Available	2021-11-04	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - Limaprost GC-MS (TMS_2_7) - 70eV, Positive	Not Available	2021-11-04	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - Limaprost GC-MS (TMS_2_8) - 70eV, Positive	Not Available	2021-11-04	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - Limaprost GC-MS (TMS_2_9) - 70eV, Positive	Not Available	2021-11-04	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - Limaprost GC-MS (TMS_3_1) - 70eV, Positive	Not Available	2021-11-04	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - Limaprost GC-MS (TMS_3_2) - 70eV, Positive	Not Available	2021-11-04	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - Limaprost GC-MS (TMS_3_3) - 70eV, Positive	Not Available	2021-11-04	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - Limaprost GC-MS (TMS_3_4) - 70eV, Positive	Not Available	2021-11-04	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - Limaprost GC-MS (TMS_3_5) - 70eV, Positive	Not Available	2021-11-04	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - Limaprost GC-MS (TMS_3_6) - 70eV, Positive	Not Available	2021-11-04	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - Limaprost GC-MS (TMS_3_7) - 70eV, Positive	Not Available	2021-11-04	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - Limaprost GC-MS (TBDMS_1_1) - 70eV, Positive	Not Available	2021-11-04	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - Limaprost GC-MS (TBDMS_1_2) - 70eV, Positive	Not Available	2021-11-04	Wishart Lab	View Spectrum

MS/MS Spectra

Spectrum Type	Description	Splash Key	Deposition Date	Source	View
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - Limaprost 10V, Positive-QTOF	splash10-01ot-0009000000-b928b6c31f7f70fdb9c8	2021-10-12	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - Limaprost 20V, Positive-QTOF	splash10-0002-3269000000-f7e38443666313feb868	2021-10-12	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - Limaprost 40V, Positive-QTOF	splash10-001a-8910000000-8661881b6d358402912e	2021-10-12	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - Limaprost 10V, Negative-QTOF	splash10-03di-0009000000-c9a34bf14ab2c1f97b95	2021-10-12	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - Limaprost 20V, Negative-QTOF	splash10-00kf-0019000000-ac984edc488e977ae532	2021-10-12	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - Limaprost 40V, Negative-QTOF	splash10-000x-9775000000-1c06c1127eae26cbd0e1	2021-10-12	Wishart Lab	View Spectrum

Biological Properties

Cellular Locations

Not Available

Biospecimen Locations

Blood

Tissue Locations

Not Available

Pathways

Not Available

Name	SMPDB/PathBank	KEGG

Normal Concentrations

Biospecimen	Status	Value	Age	Sex	Condition	Reference	Details
Blood	Detected but not Quantified	Not Quantified	Not Specified	Not Specified	Normal	31557052	details

Abnormal Concentrations

Not Available

Associated Disorders and Diseases

Disease References

None

Associated OMIM IDs

None

External Links

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FooDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

3790

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

3927

PDB ID

Not Available

ChEBI ID

Not Available

Food Biomarker Ontology

Not Available

VMH ID

Not Available

MarkerDB ID

Not Available

Good Scents ID

Not Available

References

Synthesis Reference

Not Available

Material Safety Data Sheet (MSDS)

Not Available

General References

Barupal DK, Fiehn O: Generating the Blood Exposome Database Using a Comprehensive Text Mining and Database Fusion Approach. Environ Health Perspect. 2019 Sep;127(9):97008. doi: 10.1289/EHP4713. Epub 2019 Sep 26. [PubMed:31557052 ]

Showing metabocard for Limaprost (HMDB0254093)

MOL for HMDB0254093 (Limaprost)

3D MOL for HMDB0254093 (Limaprost)

3D SDF for HMDB0254093 (Limaprost)

3D-SDF for HMDB0254093 (Limaprost)

PDB for HMDB0254093 (Limaprost)

3D PDB for HMDB0254093 (Limaprost)

SMILES for HMDB0254093 (Limaprost)

INCHI for HMDB0254093 (Limaprost)

Structure for HMDB0254093 (Limaprost)

3D Structure for HMDB0254093 (Limaprost)

Predicted Collision Cross Sections

Predicted Kovats Retention Indices

Underivatized

Derivatized

GC-MS Spectra

MS/MS Spectra