Jump To Section:

Identification Taxonomy Ontology Physical properties Spectra Biological properties Concentrations Links References XML

Record Information

Version

5.0

Status

Detected but not Quantified

Creation Date

2021-09-11 13:29:20 UTC

Update Date

2021-09-26 23:08:10 UTC

HMDB ID

HMDB0254280

Secondary Accession Numbers

None

Metabolite Identification

Common Name

M-Nifedipine

Description

M-Nifedipine, also known as bay A4339, belongs to the class of organic compounds known as dihydropyridinecarboxylic acids and derivatives. Dihydropyridinecarboxylic acids and derivatives are compounds containing a dihydropyridine moiety bearing a carboxylic acid group. Based on a literature review a significant number of articles have been published on M-Nifedipine. This compound has been identified in human blood as reported by (PMID: 31557052 ). M-nifedipine is not a naturally occurring metabolite and is only found in those individuals exposed to this compound or its derivatives. Technically M-Nifedipine is part of the human exposome. The exposome can be defined as the collection of all the exposures of an individual in a lifetime and how those exposures relate to health. An individual's exposure begins before birth and includes insults from environmental and occupational sources.

Structure

MOL 3D MOL SDF 3D SDF PDB 3D PDB SMILES InChI

HMDB0254280
     RDKit          3D
M-Nifedipine
 43 44  0  0  0  0  0  0  0  0999 V2000
   -0.3837    4.8927    0.9304 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0242    3.6856    0.5581 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4277    2.4628    0.7566 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7286    2.4888    1.2928 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0286    1.1684    0.3970 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2303    1.1985   -0.1560 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9682    2.4674   -0.4160 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8291   -0.0245   -0.5116 N   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1397   -1.2401   -0.2716 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8198   -2.5023   -0.6674 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9456   -1.2928    0.2766 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2287   -2.5631    0.5257 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9128   -2.5852    1.0516 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7577   -3.8021    0.2013 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0407   -5.0045    0.4548 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2577   -0.0718    0.6738 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1063    0.0136    0.0728 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2741    0.0900   -1.2920 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5559    0.1697   -1.8444 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6685    0.1728   -1.0290 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5058    0.0975    0.3178 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.6292    0.0976    1.2009 N   0  0  0  0  0  4  0  0  0  0  0  0
    4.4986    0.0292    2.4389 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.8853    0.1749    0.6722 O   0  0  0  0  0  1  0  0  0  0  0  0
    2.2377    0.0190    0.8580 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7964    5.2948    1.8740 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.7152    4.7130    1.0713 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5695    5.6580    0.1470 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4724    3.1335   -1.1340 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2160    3.0251    0.5178 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9809    2.1666   -0.8150 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7978   -0.0237   -0.9592 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2335   -3.0608   -1.4178 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8029   -2.2941   -1.1646 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9738   -3.1375    0.2187 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.0464   -4.8479    0.2889 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3701   -5.8228   -0.2204 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2674   -5.3344    1.4864 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1331   -0.1261    1.7971 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4437    0.0915   -1.9747 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.7301    0.2311   -2.9094 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.6677    0.2332   -1.4272 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.0895   -0.0417    1.9303 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  2  0
  3  5  1  0
  5  6  2  0
  6  7  1  0
  6  8  1  0
  8  9  1  0
  9 10  1  0
  9 11  2  0
 11 12  1  0
 12 13  2  0
 12 14  1  0
 14 15  1  0
 11 16  1  0
 16 17  1  0
 17 18  2  0
 18 19  1  0
 19 20  2  0
 20 21  1  0
 21 22  1  0
 22 23  2  0
 22 24  1  0
 21 25  2  0
 16  5  1  0
 25 17  1  0
  1 26  1  0
  1 27  1  0
  1 28  1  0
  7 29  1  0
  7 30  1  0
  7 31  1  0
  8 32  1  0
 10 33  1  0
 10 34  1  0
 10 35  1  0
 15 36  1  0
 15 37  1  0
 15 38  1  0
 16 39  1  0
 18 40  1  0
 19 41  1  0
 20 42  1  0
 25 43  1  0
M  CHG  2  22   1  24  -1
M  END

  Mrv1652309112115292D          

 25 26  0  0  0  0            999 V2000
    0.7145   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289   -1.6500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289   -2.4750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -2.8875    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000   -2.4750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000   -1.6500    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7145   -2.8875    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -3.7125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289   -4.1250    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0000   -4.1250    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0000   -4.9500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434   -2.8875    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579   -2.4750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5724   -2.8875    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5724   -3.7125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579   -4.1250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434   -3.7125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2868   -2.4750    0.0000 N   0  3  0  0  0  0  0  0  0  0  0  0
    4.2868   -1.6500    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.0013   -2.8875    0.0000 O   0  5  0  0  0  0  0  0  0  0  0  0
    2.1434   -1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579   -1.6500    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434   -0.4125    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579   -0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  2  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  2  0  0  0  0
  6  7  1  0  0  0  0
  2  7  1  0  0  0  0
  6  8  1  0  0  0  0
  5  9  1  0  0  0  0
  9 10  2  0  0  0  0
  9 11  1  0  0  0  0
 11 12  1  0  0  0  0
  4 13  1  0  0  0  0
 13 14  2  0  0  0  0
 14 15  1  0  0  0  0
 15 16  2  0  0  0  0
 16 17  1  0  0  0  0
 17 18  2  0  0  0  0
 13 18  1  0  0  0  0
 15 19  1  0  0  0  0
 19 20  2  0  0  0  0
 19 21  1  0  0  0  0
  3 22  1  0  0  0  0
 22 23  2  0  0  0  0
 22 24  1  0  0  0  0
 24 25  1  0  0  0  0
M  CHG  2  19   1  21  -1
M  END
> <DATABASE_ID>
HMDB0254280

> <DATABASE_NAME>
hmdb

> <SMILES>
COC(=O)C1=C(C)NC(C)=C(C1C1=CC(=CC=C1)[N+]([O-])=O)C(=O)OC

> <INCHI_IDENTIFIER>
InChI=1S/C17H18N2O6/c1-9-13(16(20)24-3)15(14(10(2)18-9)17(21)25-4)11-6-5-7-12(8-11)19(22)23/h5-8,15,18H,1-4H3

> <INCHI_KEY>
MCTRZKAKODSRLQ-UHFFFAOYSA-N

> <FORMULA>
C17H18N2O6

> <MOLECULAR_WEIGHT>
346.339

> <EXACT_MASS>
346.116486308

> <JCHEM_ACCEPTOR_COUNT>
5

> <JCHEM_ATOM_COUNT>
43

> <JCHEM_AVERAGE_POLARIZABILITY>
34.23243317653734

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
1

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
3,5-dimethyl 2,6-dimethyl-4-(3-nitrophenyl)-1,4-dihydropyridine-3,5-dicarboxylate

> <ALOGPS_LOGP>
2.80

> <JCHEM_LOGP>
1.8154942816666662

> <ALOGPS_LOGS>
-4.25

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
2

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA_STRONGEST_ACIDIC>
19.470719138341664

> <JCHEM_PKA_STRONGEST_BASIC>
-6.634509191234623

> <JCHEM_POLAR_SURFACE_AREA>
107.77

> <JCHEM_REFRACTIVITY>
91.16049999999998

> <JCHEM_ROTATABLE_BOND_COUNT>
6

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
1.94e-02 g/l

> <JCHEM_TRADITIONAL_IUPAC>
3,5-dimethyl 2,6-dimethyl-4-(3-nitrophenyl)-1,4-dihydropyridine-3,5-dicarboxylate

> <JCHEM_VEBER_RULE>
0

$$$$

HMDB0254280
     RDKit          3D
M-Nifedipine
 43 44  0  0  0  0  0  0  0  0999 V2000
   -0.3837    4.8927    0.9304 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0242    3.6856    0.5581 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4277    2.4628    0.7566 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7286    2.4888    1.2928 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0286    1.1684    0.3970 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2303    1.1985   -0.1560 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9682    2.4674   -0.4160 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8291   -0.0245   -0.5116 N   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1397   -1.2401   -0.2716 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8198   -2.5023   -0.6674 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9456   -1.2928    0.2766 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2287   -2.5631    0.5257 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9128   -2.5852    1.0516 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7577   -3.8021    0.2013 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0407   -5.0045    0.4548 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2577   -0.0718    0.6738 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1063    0.0136    0.0728 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2741    0.0900   -1.2920 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5559    0.1697   -1.8444 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6685    0.1728   -1.0290 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5058    0.0975    0.3178 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.6292    0.0976    1.2009 N   0  0  0  0  0  4  0  0  0  0  0  0
    4.4986    0.0292    2.4389 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.8853    0.1749    0.6722 O   0  0  0  0  0  1  0  0  0  0  0  0
    2.2377    0.0190    0.8580 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7964    5.2948    1.8740 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.7152    4.7130    1.0713 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5695    5.6580    0.1470 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4724    3.1335   -1.1340 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2160    3.0251    0.5178 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9809    2.1666   -0.8150 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7978   -0.0237   -0.9592 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2335   -3.0608   -1.4178 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8029   -2.2941   -1.1646 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9738   -3.1375    0.2187 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.0464   -4.8479    0.2889 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3701   -5.8228   -0.2204 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2674   -5.3344    1.4864 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1331   -0.1261    1.7971 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4437    0.0915   -1.9747 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.7301    0.2311   -2.9094 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.6677    0.2332   -1.4272 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.0895   -0.0417    1.9303 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  2  0
  3  5  1  0
  5  6  2  0
  6  7  1  0
  6  8  1  0
  8  9  1  0
  9 10  1  0
  9 11  2  0
 11 12  1  0
 12 13  2  0
 12 14  1  0
 14 15  1  0
 11 16  1  0
 16 17  1  0
 17 18  2  0
 18 19  1  0
 19 20  2  0
 20 21  1  0
 21 22  1  0
 22 23  2  0
 22 24  1  0
 21 25  2  0
 16  5  1  0
 25 17  1  0
  1 26  1  0
  1 27  1  0
  1 28  1  0
  7 29  1  0
  7 30  1  0
  7 31  1  0
  8 32  1  0
 10 33  1  0
 10 34  1  0
 10 35  1  0
 15 36  1  0
 15 37  1  0
 15 38  1  0
 16 39  1  0
 18 40  1  0
 19 41  1  0
 20 42  1  0
 25 43  1  0
M  CHG  2  22   1  24  -1
M  END

HEADER    PROTEIN                                 11-SEP-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   11-SEP-21         0                                  
HETATM    1  C   UNK     0       1.334  -0.770   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       1.334  -2.310   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       2.667  -3.080   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       2.667  -4.620   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       1.334  -5.390   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       0.000  -4.620   0.000  0.00  0.00           C+0
HETATM    7  N   UNK     0       0.000  -3.080   0.000  0.00  0.00           N+0
HETATM    8  C   UNK     0      -1.334  -5.390   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       1.334  -6.930   0.000  0.00  0.00           C+0
HETATM   10  O   UNK     0       2.667  -7.700   0.000  0.00  0.00           O+0
HETATM   11  O   UNK     0      -0.000  -7.700   0.000  0.00  0.00           O+0
HETATM   12  C   UNK     0      -0.000  -9.240   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       4.001  -5.390   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       5.335  -4.620   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       6.668  -5.390   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       6.668  -6.930   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       5.335  -7.700   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       4.001  -6.930   0.000  0.00  0.00           C+0
HETATM   19  N   UNK     0       8.002  -4.620   0.000  0.00  0.00           N+1
HETATM   20  O   UNK     0       8.002  -3.080   0.000  0.00  0.00           O+0
HETATM   21  O   UNK     0       9.336  -5.390   0.000  0.00  0.00           O-1
HETATM   22  C   UNK     0       4.001  -2.310   0.000  0.00  0.00           C+0
HETATM   23  O   UNK     0       5.335  -3.080   0.000  0.00  0.00           O+0
HETATM   24  O   UNK     0       4.001  -0.770   0.000  0.00  0.00           O+0
HETATM   25  C   UNK     0       5.335  -0.000   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3    7                                                  
CONECT    3    2    4   22                                                  
CONECT    4    3    5   13                                                  
CONECT    5    4    6    9                                                  
CONECT    6    5    7    8                                                  
CONECT    7    6    2                                                       
CONECT    8    6                                                            
CONECT    9    5   10   11                                                  
CONECT   10    9                                                            
CONECT   11    9   12                                                       
CONECT   12   11                                                            
CONECT   13    4   14   18                                                  
CONECT   14   13   15                                                       
CONECT   15   14   16   19                                                  
CONECT   16   15   17                                                       
CONECT   17   16   18                                                       
CONECT   18   17   13                                                       
CONECT   19   15   20   21                                                  
CONECT   20   19                                                            
CONECT   21   19                                                            
CONECT   22    3   23   24                                                  
CONECT   23   22                                                            
CONECT   24   22   25                                                       
CONECT   25   24                                                            
MASTER        0    0    0    0    0    0    0    0   25    0   52    0
END

COMPND    HMDB0254280
HETATM    1  C1  UNL     1      -0.384   4.893   0.930  1.00  0.00           C  
HETATM    2  O1  UNL     1      -1.024   3.686   0.558  1.00  0.00           O  
HETATM    3  C2  UNL     1      -0.428   2.463   0.757  1.00  0.00           C  
HETATM    4  O2  UNL     1       0.729   2.489   1.293  1.00  0.00           O  
HETATM    5  C3  UNL     1      -1.029   1.168   0.397  1.00  0.00           C  
HETATM    6  C4  UNL     1      -2.230   1.199  -0.156  1.00  0.00           C  
HETATM    7  C5  UNL     1      -2.968   2.467  -0.416  1.00  0.00           C  
HETATM    8  N1  UNL     1      -2.829  -0.025  -0.512  1.00  0.00           N  
HETATM    9  C6  UNL     1      -2.140  -1.240  -0.272  1.00  0.00           C  
HETATM   10  C7  UNL     1      -2.820  -2.502  -0.667  1.00  0.00           C  
HETATM   11  C8  UNL     1      -0.946  -1.293   0.277  1.00  0.00           C  
HETATM   12  C9  UNL     1      -0.229  -2.563   0.526  1.00  0.00           C  
HETATM   13  O3  UNL     1       0.913  -2.585   1.052  1.00  0.00           O  
HETATM   14  O4  UNL     1      -0.758  -3.802   0.201  1.00  0.00           O  
HETATM   15  C10 UNL     1      -0.041  -5.004   0.455  1.00  0.00           C  
HETATM   16  C11 UNL     1      -0.258  -0.072   0.674  1.00  0.00           C  
HETATM   17  C12 UNL     1       1.106   0.014   0.073  1.00  0.00           C  
HETATM   18  C13 UNL     1       1.274   0.090  -1.292  1.00  0.00           C  
HETATM   19  C14 UNL     1       2.556   0.170  -1.844  1.00  0.00           C  
HETATM   20  C15 UNL     1       3.668   0.173  -1.029  1.00  0.00           C  
HETATM   21  C16 UNL     1       3.506   0.097   0.318  1.00  0.00           C  
HETATM   22  N2  UNL     1       4.629   0.098   1.201  1.00  0.00           N1+
HETATM   23  O5  UNL     1       4.499   0.029   2.439  1.00  0.00           O  
HETATM   24  O6  UNL     1       5.885   0.175   0.672  1.00  0.00           O1-
HETATM   25  C17 UNL     1       2.238   0.019   0.858  1.00  0.00           C  
HETATM   26  H1  UNL     1      -0.796   5.295   1.874  1.00  0.00           H  
HETATM   27  H2  UNL     1       0.715   4.713   1.071  1.00  0.00           H  
HETATM   28  H3  UNL     1      -0.569   5.658   0.147  1.00  0.00           H  
HETATM   29  H4  UNL     1      -2.472   3.134  -1.134  1.00  0.00           H  
HETATM   30  H5  UNL     1      -3.216   3.025   0.518  1.00  0.00           H  
HETATM   31  H6  UNL     1      -3.981   2.167  -0.815  1.00  0.00           H  
HETATM   32  H7  UNL     1      -3.798  -0.024  -0.959  1.00  0.00           H  
HETATM   33  H8  UNL     1      -2.234  -3.061  -1.418  1.00  0.00           H  
HETATM   34  H9  UNL     1      -3.803  -2.294  -1.165  1.00  0.00           H  
HETATM   35  H10 UNL     1      -2.974  -3.137   0.219  1.00  0.00           H  
HETATM   36  H11 UNL     1       1.046  -4.848   0.289  1.00  0.00           H  
HETATM   37  H12 UNL     1      -0.370  -5.823  -0.220  1.00  0.00           H  
HETATM   38  H13 UNL     1      -0.267  -5.334   1.486  1.00  0.00           H  
HETATM   39  H14 UNL     1      -0.133  -0.126   1.797  1.00  0.00           H  
HETATM   40  H15 UNL     1       0.444   0.092  -1.975  1.00  0.00           H  
HETATM   41  H16 UNL     1       2.730   0.231  -2.909  1.00  0.00           H  
HETATM   42  H17 UNL     1       4.668   0.233  -1.427  1.00  0.00           H  
HETATM   43  H18 UNL     1       2.090  -0.042   1.930  1.00  0.00           H  
CONECT    1    2   26   27   28
CONECT    2    3
CONECT    3    4    4    5
CONECT    5    6    6   16
CONECT    6    7    8
CONECT    7   29   30   31
CONECT    8    9   32
CONECT    9   10   11   11
CONECT   10   33   34   35
CONECT   11   12   16
CONECT   12   13   13   14
CONECT   14   15
CONECT   15   36   37   38
CONECT   16   17   39
CONECT   17   18   18   25
CONECT   18   19   40
CONECT   19   20   20   41
CONECT   20   21   42
CONECT   21   22   25   25
CONECT   22   23   23   24
CONECT   25   43
END

HMDB0254280
     RDKit          3D
M-Nifedipine
 43 44  0  0  0  0  0  0  0  0999 V2000
   -0.3837    4.8927    0.9304 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0242    3.6856    0.5581 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4277    2.4628    0.7566 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7286    2.4888    1.2928 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0286    1.1684    0.3970 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2303    1.1985   -0.1560 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9682    2.4674   -0.4160 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8291   -0.0245   -0.5116 N   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1397   -1.2401   -0.2716 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8198   -2.5023   -0.6674 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9456   -1.2928    0.2766 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2287   -2.5631    0.5257 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9128   -2.5852    1.0516 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7577   -3.8021    0.2013 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0407   -5.0045    0.4548 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2577   -0.0718    0.6738 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1063    0.0136    0.0728 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2741    0.0900   -1.2920 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5559    0.1697   -1.8444 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6685    0.1728   -1.0290 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5058    0.0975    0.3178 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.6292    0.0976    1.2009 N   0  0  0  0  0  4  0  0  0  0  0  0
    4.4986    0.0292    2.4389 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.8853    0.1749    0.6722 O   0  0  0  0  0  1  0  0  0  0  0  0
    2.2377    0.0190    0.8580 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7964    5.2948    1.8740 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.7152    4.7130    1.0713 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5695    5.6580    0.1470 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4724    3.1335   -1.1340 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2160    3.0251    0.5178 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9809    2.1666   -0.8150 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7978   -0.0237   -0.9592 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2335   -3.0608   -1.4178 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8029   -2.2941   -1.1646 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9738   -3.1375    0.2187 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.0464   -4.8479    0.2889 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3701   -5.8228   -0.2204 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2674   -5.3344    1.4864 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1331   -0.1261    1.7971 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4437    0.0915   -1.9747 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.7301    0.2311   -2.9094 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.6677    0.2332   -1.4272 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.0895   -0.0417    1.9303 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  2  0
  3  5  1  0
  5  6  2  0
  6  7  1  0
  6  8  1  0
  8  9  1  0
  9 10  1  0
  9 11  2  0
 11 12  1  0
 12 13  2  0
 12 14  1  0
 14 15  1  0
 11 16  1  0
 16 17  1  0
 17 18  2  0
 18 19  1  0
 19 20  2  0
 20 21  1  0
 21 22  1  0
 22 23  2  0
 22 24  1  0
 21 25  2  0
 16  5  1  0
 25 17  1  0
  1 26  1  0
  1 27  1  0
  1 28  1  0
  7 29  1  0
  7 30  1  0
  7 31  1  0
  8 32  1  0
 10 33  1  0
 10 34  1  0
 10 35  1  0
 15 36  1  0
 15 37  1  0
 15 38  1  0
 16 39  1  0
 18 40  1  0
 19 41  1  0
 20 42  1  0
 25 43  1  0
M  CHG  2  22   1  24  -1
M  END

View in JSmol View Stereo Labels

Synonyms

Value	Source
3,5-Dimethyl 2,6-dimethyl-4-(3-nitrophenyl)-1,4-dihydropyridine-3,5-dicarboxylic acid	HMDB
1,4-Dihydro-2,6-dimethyl-4-(3-nitrophenyl)-3,5-pyridinedicarboxylic acid dimethyl ester	HMDB
2,6-Dimethyl-3,5-dicarbomethoxy-4-(3-nitrophenyl)-1,4-dihydropyridine	HMDB
3-Nifedipine	HMDB
Bay a4339	HMDB

Chemical Formula

C₁₇H₁₈N₂O₆

Average Molecular Weight

346.339

Monoisotopic Molecular Weight

346.116486308

IUPAC Name

3,5-dimethyl 2,6-dimethyl-4-(3-nitrophenyl)-1,4-dihydropyridine-3,5-dicarboxylate

Traditional Name

3,5-dimethyl 2,6-dimethyl-4-(3-nitrophenyl)-1,4-dihydropyridine-3,5-dicarboxylate

CAS Registry Number

Not Available

SMILES

COC(=O)C1=C(C)NC(C)=C(C1C1=CC(=CC=C1)[N+]([O-])=O)C(=O)OC

InChI Identifier

InChI=1S/C17H18N2O6/c1-9-13(16(20)24-3)15(14(10(2)18-9)17(21)25-4)11-6-5-7-12(8-11)19(22)23/h5-8,15,18H,1-4H3

InChI Key

MCTRZKAKODSRLQ-UHFFFAOYSA-N

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as dihydropyridinecarboxylic acids and derivatives. Dihydropyridinecarboxylic acids and derivatives are compounds containing a dihydropyridine moiety bearing a carboxylic acid group.

Kingdom

Organic compounds

Super Class

Organoheterocyclic compounds

Class

Pyridines and derivatives

Sub Class

Hydropyridines

Direct Parent

Dihydropyridinecarboxylic acids and derivatives

Alternative Parents

Substituents

Dihydropyridinecarboxylic acid derivative
Nitrobenzene
Nitroaromatic compound
Monocyclic benzene moiety
Dicarboxylic acid or derivatives
Benzenoid
Methyl ester
Enoate ester
Alpha,beta-unsaturated carboxylic ester
Vinylogous amide
Organic nitro compound
Carboxylic acid ester
C-nitro compound
Amino acid or derivatives
Azacycle
Propargyl-type 1,3-dipolar organic compound
Organic 1,3-dipolar compound
Carboxylic acid derivative
Allyl-type 1,3-dipolar organic compound
Secondary aliphatic amine
Enamine
Organic oxoazanium
Secondary amine
Organopnictogen compound
Carbonyl group
Hydrocarbon derivative
Organic oxide
Organic nitrogen compound
Organonitrogen compound
Organooxygen compound
Organic oxygen compound
Amine
Aromatic heteromonocyclic compound

Molecular Framework

Aromatic heteromonocyclic compounds

External Descriptors

Not Available

Ontology

Physiological effect

Not Available

Disposition

Biological location

Non-excretory biofluid

Biofluid or Excreta

Blood (PMID: 31557052)

Source

Exogenous

Exogenous (PMID: 31557052)

Process

Not Available

Role

Not Available

Physical Properties

State

Not Available

Experimental Molecular Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Experimental Chromatographic Properties

Not Available

Predicted Molecular Properties

Property	Value	Source
logP	2.8	ALOGPS
logP	1.82	ChemAxon
logS	-4.2	ALOGPS
pKa (Strongest Acidic)	19.47	ChemAxon
pKa (Strongest Basic)	-6.6	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	5	ChemAxon
Hydrogen Donor Count	1	ChemAxon
Polar Surface Area	107.77 Å²	ChemAxon
Rotatable Bond Count	6	ChemAxon
Refractivity	91.16 m³·mol⁻¹	ChemAxon
Polarizability	34.23 Å³	ChemAxon
Number of Rings	2	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

Predicted Chromatographic Properties

Predicted Collision Cross Sections

Predictor	Adduct Type	CCS Value (Å²)	Reference
DeepCCS	[M+H]+	186.748	30932474
DeepCCS	[M-H]-	183.308	30932474
DeepCCS	[M-2H]-	219.271	30932474
DeepCCS	[M+Na]+	195.564	30932474

Predicted Kovats Retention Indices

Underivatized

Metabolite	SMILES	Kovats RI Value	Column Type	Reference
M-Nifedipine	COC(=O)C1=C(C)NC(C)=C(C1C1=CC(=CC=C1)[N+]([O-])=O)C(=O)OC	3800.1	Standard polar	33892256
M-Nifedipine	COC(=O)C1=C(C)NC(C)=C(C1C1=CC(=CC=C1)[N+]([O-])=O)C(=O)OC	2619.7	Standard non polar	33892256
M-Nifedipine	COC(=O)C1=C(C)NC(C)=C(C1C1=CC(=CC=C1)[N+]([O-])=O)C(=O)OC	2808.4	Semi standard non polar	33892256

Derivatized

Derivative Name / Structure	SMILES	Kovats RI Value	Column Type	Reference
M-Nifedipine,1TMS,isomer #1	COC(=O)C1=C(C)N([Si](C)(C)C)C(C)=C(C(=O)OC)C1C1=CC=CC([N+](=O)[O-])=C1	2609.7	Semi standard non polar	33892256
M-Nifedipine,1TMS,isomer #1	COC(=O)C1=C(C)N([Si](C)(C)C)C(C)=C(C(=O)OC)C1C1=CC=CC([N+](=O)[O-])=C1	2384.2	Standard non polar	33892256
M-Nifedipine,1TMS,isomer #1	COC(=O)C1=C(C)N([Si](C)(C)C)C(C)=C(C(=O)OC)C1C1=CC=CC([N+](=O)[O-])=C1	3540.9	Standard polar	33892256
M-Nifedipine,1TBDMS,isomer #1	COC(=O)C1=C(C)N([Si](C)(C)C(C)(C)C)C(C)=C(C(=O)OC)C1C1=CC=CC([N+](=O)[O-])=C1	2829.1	Semi standard non polar	33892256
M-Nifedipine,1TBDMS,isomer #1	COC(=O)C1=C(C)N([Si](C)(C)C(C)(C)C)C(C)=C(C(=O)OC)C1C1=CC=CC([N+](=O)[O-])=C1	2629.0	Standard non polar	33892256
M-Nifedipine,1TBDMS,isomer #1	COC(=O)C1=C(C)N([Si](C)(C)C(C)(C)C)C(C)=C(C(=O)OC)C1C1=CC=CC([N+](=O)[O-])=C1	3546.3	Standard polar	33892256

Spectra

GC-MS Spectra

Spectrum Type	Description	Splash Key	Deposition Date	Source	View
Predicted GC-MS	Predicted GC-MS Spectrum - M-Nifedipine GC-MS (Non-derivatized) - 70eV, Positive	splash10-02ci-1098000000-e5ea9b87fb56c7c2bf8c	2021-09-24	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - M-Nifedipine GC-MS (Non-derivatized) - 70eV, Positive	Not Available	2021-10-12	Wishart Lab	View Spectrum

Biological Properties

Cellular Locations

Not Available

Biospecimen Locations

Blood

Tissue Locations

Not Available

Pathways

Not Available

Name	SMPDB/PathBank	KEGG

Normal Concentrations

Biospecimen	Status	Value	Age	Sex	Condition	Reference	Details
Blood	Detected but not Quantified	Not Quantified	Not Specified	Not Specified	Normal	31557052	details

Abnormal Concentrations

Not Available

Associated Disorders and Diseases

Disease References

None

Associated OMIM IDs

None

External Links

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FooDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

80383

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Nifedipine

METLIN ID

Not Available

PubChem Compound

89082

PDB ID

Not Available

ChEBI ID

Not Available

Food Biomarker Ontology

Not Available

VMH ID

Not Available

MarkerDB ID

Not Available

Good Scents ID

Not Available

References

Synthesis Reference

Not Available

Material Safety Data Sheet (MSDS)

Not Available

General References

Barupal DK, Fiehn O: Generating the Blood Exposome Database Using a Comprehensive Text Mining and Database Fusion Approach. Environ Health Perspect. 2019 Sep;127(9):97008. doi: 10.1289/EHP4713. Epub 2019 Sep 26. [PubMed:31557052 ]

Showing metabocard for M-Nifedipine (HMDB0254280)

MOL for HMDB0254280 (M-Nifedipine)

3D MOL for HMDB0254280 (M-Nifedipine)

3D SDF for HMDB0254280 (M-Nifedipine)

3D-SDF for HMDB0254280 (M-Nifedipine)

PDB for HMDB0254280 (M-Nifedipine)

3D PDB for HMDB0254280 (M-Nifedipine)

SMILES for HMDB0254280 (M-Nifedipine)

INCHI for HMDB0254280 (M-Nifedipine)

Structure for HMDB0254280 (M-Nifedipine)

3D Structure for HMDB0254280 (M-Nifedipine)

Predicted Collision Cross Sections

Predicted Kovats Retention Indices

Underivatized

Derivatized

GC-MS Spectra