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Record Information

Version

5.0

Status

Detected but not Quantified

Creation Date

2021-09-11 14:41:01 UTC

Update Date

2021-09-26 23:09:40 UTC

HMDB ID

HMDB0255113

Secondary Accession Numbers

None

Metabolite Identification

Common Name

N-Desethyl Milnacipran

Description

N-Desethyl Milnacipran belongs to the class of organic compounds known as phenylacetamides. These are amide derivatives of phenylacetic acids. Based on a literature review very few articles have been published on N-Desethyl Milnacipran. This compound has been identified in human blood as reported by (PMID: 31557052 ). N-desethyl milnacipran is not a naturally occurring metabolite and is only found in those individuals exposed to this compound or its derivatives. Technically N-Desethyl Milnacipran is part of the human exposome. The exposome can be defined as the collection of all the exposures of an individual in a lifetime and how those exposures relate to health. An individual's exposure begins before birth and includes insults from environmental and occupational sources.

Structure

MOL 3D MOL SDF 3D SDF PDB 3D PDB SMILES InChI

HMDB0255113
     RDKit          3D
N-Desethyl Milnacipran
 34 35  0  0  0  0  0  0  0  0999 V2000
    3.8845   -1.9796   -0.5249 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3225   -0.6027   -0.6947 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9416   -0.5838   -0.2650 N   0  0  0  0  0  0  0  0  0  0  0  0
    1.2189    0.6112   -0.3385 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8236    1.6515   -0.7832 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2257    0.7743    0.0698 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8696   -0.4742    0.4572 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5405   -0.6568    1.6447 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1489   -1.8850    1.8772 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0793   -2.8920    0.9394 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4094   -2.7178   -0.2528 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8031   -1.5057   -0.4945 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0244    1.4865   -1.0552 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7019    2.1289    0.2721 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8332    2.5846    1.1096 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9292    4.0542    0.9734 N   0  0  0  0  0  0  0  0  0  0  0  0
    4.7574   -1.9136    0.1638 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.1478   -2.6522   -0.0264 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.1776   -2.4039   -1.5079 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.4315   -0.2910   -1.7574 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.8688    0.1433   -0.0867 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.5073   -1.4368    0.0993 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6008    0.1192    2.3907 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6717   -2.0029    2.8215 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5567   -3.8396    1.1349 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3749   -3.5412   -0.9749 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2886   -1.3922   -1.4410 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4976    1.7910   -1.9637 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0783    1.1876   -1.2092 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.1001    2.9242    0.1621 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8174    2.1969    0.8681 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5326    2.4450    2.1845 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2720    4.2902    0.0102 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9258    4.3826    0.9910 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  4  5  2  0
  4  6  1  0
  6  7  1  0
  7  8  2  0
  8  9  1  0
  9 10  2  0
 10 11  1  0
 11 12  2  0
  6 13  1  0
 13 14  1  0
 14 15  1  0
 15 16  1  0
 14  6  1  0
 12  7  1  0
  1 17  1  0
  1 18  1  0
  1 19  1  0
  2 20  1  0
  2 21  1  0
  3 22  1  0
  8 23  1  0
  9 24  1  0
 10 25  1  0
 11 26  1  0
 12 27  1  0
 13 28  1  0
 13 29  1  0
 14 30  1  0
 15 31  1  0
 15 32  1  0
 16 33  1  0
 16 34  1  0
M  END

  Mrv1652309112116412D          

 16 17  0  0  0  0            999 V2000
   -1.7351   -0.5711    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9599   -0.2889    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3279   -0.8192    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    0.4474   -0.5371    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5906    0.2754    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.0793   -1.0674    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4918   -1.7818    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6668   -1.7818    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0476   -2.1943    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7621   -1.7818    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    1.7113   -0.5371    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5681    0.2754    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2001    0.8057    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9753    0.5235    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1186   -0.2889    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4866   -0.8192    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  2  0  0  0  0
  4  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  6  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
  6 11  1  0  0  0  0
 11 12  2  0  0  0  0
 12 13  1  0  0  0  0
 13 14  2  0  0  0  0
 14 15  1  0  0  0  0
 15 16  2  0  0  0  0
 11 16  1  0  0  0  0
M  END
> <DATABASE_ID>
HMDB0255113

> <DATABASE_NAME>
hmdb

> <SMILES>
CCNC(=O)C1(CC1CN)C1=CC=CC=C1

> <INCHI_IDENTIFIER>
InChI=1S/C13H18N2O/c1-2-15-12(16)13(8-11(13)9-14)10-6-4-3-5-7-10/h3-7,11H,2,8-9,14H2,1H3,(H,15,16)

> <INCHI_KEY>
UVKUMJGXPDEXSQ-UHFFFAOYSA-N

> <FORMULA>
C13H18N2O

> <MOLECULAR_WEIGHT>
218.3

> <EXACT_MASS>
218.141913208

> <JCHEM_ACCEPTOR_COUNT>
2

> <JCHEM_ATOM_COUNT>
34

> <JCHEM_AVERAGE_POLARIZABILITY>
24.623024916398705

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
2

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
2-(aminomethyl)-N-ethyl-1-phenylcyclopropane-1-carboxamide

> <ALOGPS_LOGP>
1.25

> <JCHEM_LOGP>
0.8412226026666658

> <ALOGPS_LOGS>
-2.82

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
2

> <JCHEM_PHYSIOLOGICAL_CHARGE>
1

> <JCHEM_PKA_STRONGEST_ACIDIC>
15.917966418086408

> <JCHEM_PKA_STRONGEST_BASIC>
9.827551486642262

> <JCHEM_POLAR_SURFACE_AREA>
55.120000000000005

> <JCHEM_REFRACTIVITY>
64.16420000000001

> <JCHEM_ROTATABLE_BOND_COUNT>
4

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
3.28e-01 g/l

> <JCHEM_TRADITIONAL_IUPAC>
2-(aminomethyl)-N-ethyl-1-phenylcyclopropane-1-carboxamide

> <JCHEM_VEBER_RULE>
0

$$$$

HMDB0255113
     RDKit          3D
N-Desethyl Milnacipran
 34 35  0  0  0  0  0  0  0  0999 V2000
    3.8845   -1.9796   -0.5249 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3225   -0.6027   -0.6947 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9416   -0.5838   -0.2650 N   0  0  0  0  0  0  0  0  0  0  0  0
    1.2189    0.6112   -0.3385 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8236    1.6515   -0.7832 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2257    0.7743    0.0698 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8696   -0.4742    0.4572 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5405   -0.6568    1.6447 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1489   -1.8850    1.8772 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0793   -2.8920    0.9394 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4094   -2.7178   -0.2528 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8031   -1.5057   -0.4945 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0244    1.4865   -1.0552 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7019    2.1289    0.2721 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8332    2.5846    1.1096 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9292    4.0542    0.9734 N   0  0  0  0  0  0  0  0  0  0  0  0
    4.7574   -1.9136    0.1638 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.1478   -2.6522   -0.0264 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.1776   -2.4039   -1.5079 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.4315   -0.2910   -1.7574 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.8688    0.1433   -0.0867 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.5073   -1.4368    0.0993 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6008    0.1192    2.3907 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6717   -2.0029    2.8215 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5567   -3.8396    1.1349 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3749   -3.5412   -0.9749 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2886   -1.3922   -1.4410 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4976    1.7910   -1.9637 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0783    1.1876   -1.2092 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.1001    2.9242    0.1621 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8174    2.1969    0.8681 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5326    2.4450    2.1845 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2720    4.2902    0.0102 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9258    4.3826    0.9910 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  4  5  2  0
  4  6  1  0
  6  7  1  0
  7  8  2  0
  8  9  1  0
  9 10  2  0
 10 11  1  0
 11 12  2  0
  6 13  1  0
 13 14  1  0
 14 15  1  0
 15 16  1  0
 14  6  1  0
 12  7  1  0
  1 17  1  0
  1 18  1  0
  1 19  1  0
  2 20  1  0
  2 21  1  0
  3 22  1  0
  8 23  1  0
  9 24  1  0
 10 25  1  0
 11 26  1  0
 12 27  1  0
 13 28  1  0
 13 29  1  0
 14 30  1  0
 15 31  1  0
 15 32  1  0
 16 33  1  0
 16 34  1  0
M  END

HEADER    PROTEIN                                 11-SEP-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   11-SEP-21         0                                  
HETATM    1  C   UNK     0      -3.239  -1.066   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      -1.792  -0.539   0.000  0.00  0.00           C+0
HETATM    3  N   UNK     0      -0.612  -1.529   0.000  0.00  0.00           N+0
HETATM    4  C   UNK     0       0.835  -1.003   0.000  0.00  0.00           C+0
HETATM    5  O   UNK     0       1.102   0.514   0.000  0.00  0.00           O+0
HETATM    6  C   UNK     0       2.015  -1.992   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       2.785  -3.326   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       1.245  -3.326   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0      -0.089  -4.096   0.000  0.00  0.00           C+0
HETATM   10  N   UNK     0      -1.423  -3.326   0.000  0.00  0.00           N+0
HETATM   11  C   UNK     0       3.194  -1.003   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       2.927   0.514   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       4.107   1.504   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       5.554   0.977   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       5.821  -0.539   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       4.642  -1.529   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4                                                       
CONECT    4    3    5    6                                                  
CONECT    5    4                                                            
CONECT    6    4    7    8   11                                             
CONECT    7    6    8                                                       
CONECT    8    7    6    9                                                  
CONECT    9    8   10                                                       
CONECT   10    9                                                            
CONECT   11    6   12   16                                                  
CONECT   12   11   13                                                       
CONECT   13   12   14                                                       
CONECT   14   13   15                                                       
CONECT   15   14   16                                                       
CONECT   16   15   11                                                       
MASTER        0    0    0    0    0    0    0    0   16    0   34    0
END

COMPND    HMDB0255113
HETATM    1  C1  UNL     1       3.885  -1.980  -0.525  1.00  0.00           C  
HETATM    2  C2  UNL     1       3.323  -0.603  -0.695  1.00  0.00           C  
HETATM    3  N1  UNL     1       1.942  -0.584  -0.265  1.00  0.00           N  
HETATM    4  C3  UNL     1       1.219   0.611  -0.339  1.00  0.00           C  
HETATM    5  O1  UNL     1       1.824   1.651  -0.783  1.00  0.00           O  
HETATM    6  C4  UNL     1      -0.226   0.774   0.070  1.00  0.00           C  
HETATM    7  C5  UNL     1      -0.870  -0.474   0.457  1.00  0.00           C  
HETATM    8  C6  UNL     1      -1.541  -0.657   1.645  1.00  0.00           C  
HETATM    9  C7  UNL     1      -2.149  -1.885   1.877  1.00  0.00           C  
HETATM   10  C8  UNL     1      -2.079  -2.892   0.939  1.00  0.00           C  
HETATM   11  C9  UNL     1      -1.409  -2.718  -0.253  1.00  0.00           C  
HETATM   12  C10 UNL     1      -0.803  -1.506  -0.495  1.00  0.00           C  
HETATM   13  C11 UNL     1      -1.024   1.486  -1.055  1.00  0.00           C  
HETATM   14  C12 UNL     1      -0.702   2.129   0.272  1.00  0.00           C  
HETATM   15  C13 UNL     1      -1.833   2.585   1.110  1.00  0.00           C  
HETATM   16  N2  UNL     1      -1.929   4.054   0.973  1.00  0.00           N  
HETATM   17  H1  UNL     1       4.757  -1.914   0.164  1.00  0.00           H  
HETATM   18  H2  UNL     1       3.148  -2.652  -0.026  1.00  0.00           H  
HETATM   19  H3  UNL     1       4.178  -2.404  -1.508  1.00  0.00           H  
HETATM   20  H4  UNL     1       3.431  -0.291  -1.757  1.00  0.00           H  
HETATM   21  H5  UNL     1       3.869   0.143  -0.087  1.00  0.00           H  
HETATM   22  H6  UNL     1       1.507  -1.437   0.099  1.00  0.00           H  
HETATM   23  H7  UNL     1      -1.601   0.119   2.391  1.00  0.00           H  
HETATM   24  H8  UNL     1      -2.672  -2.003   2.822  1.00  0.00           H  
HETATM   25  H9  UNL     1      -2.557  -3.840   1.135  1.00  0.00           H  
HETATM   26  H10 UNL     1      -1.375  -3.541  -0.975  1.00  0.00           H  
HETATM   27  H11 UNL     1      -0.289  -1.392  -1.441  1.00  0.00           H  
HETATM   28  H12 UNL     1      -0.498   1.791  -1.964  1.00  0.00           H  
HETATM   29  H13 UNL     1      -2.078   1.188  -1.209  1.00  0.00           H  
HETATM   30  H14 UNL     1       0.100   2.924   0.162  1.00  0.00           H  
HETATM   31  H15 UNL     1      -2.817   2.197   0.868  1.00  0.00           H  
HETATM   32  H16 UNL     1      -1.533   2.445   2.185  1.00  0.00           H  
HETATM   33  H17 UNL     1      -2.272   4.290   0.010  1.00  0.00           H  
HETATM   34  H18 UNL     1      -0.926   4.383   0.991  1.00  0.00           H  
CONECT    1    2   17   18   19
CONECT    2    3   20   21
CONECT    3    4   22
CONECT    4    5    5    6
CONECT    6    7   13   14
CONECT    7    8    8   12
CONECT    8    9   23
CONECT    9   10   10   24
CONECT   10   11   25
CONECT   11   12   12   26
CONECT   12   27
CONECT   13   14   28   29
CONECT   14   15   30
CONECT   15   16   31   32
CONECT   16   33   34
END

HMDB0255113
     RDKit          3D
N-Desethyl Milnacipran
 34 35  0  0  0  0  0  0  0  0999 V2000
    3.8845   -1.9796   -0.5249 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3225   -0.6027   -0.6947 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9416   -0.5838   -0.2650 N   0  0  0  0  0  0  0  0  0  0  0  0
    1.2189    0.6112   -0.3385 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8236    1.6515   -0.7832 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2257    0.7743    0.0698 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8696   -0.4742    0.4572 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5405   -0.6568    1.6447 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1489   -1.8850    1.8772 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0793   -2.8920    0.9394 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4094   -2.7178   -0.2528 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8031   -1.5057   -0.4945 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0244    1.4865   -1.0552 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7019    2.1289    0.2721 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8332    2.5846    1.1096 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9292    4.0542    0.9734 N   0  0  0  0  0  0  0  0  0  0  0  0
    4.7574   -1.9136    0.1638 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.1478   -2.6522   -0.0264 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.1776   -2.4039   -1.5079 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.4315   -0.2910   -1.7574 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.8688    0.1433   -0.0867 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.5073   -1.4368    0.0993 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6008    0.1192    2.3907 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6717   -2.0029    2.8215 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5567   -3.8396    1.1349 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3749   -3.5412   -0.9749 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2886   -1.3922   -1.4410 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4976    1.7910   -1.9637 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0783    1.1876   -1.2092 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.1001    2.9242    0.1621 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8174    2.1969    0.8681 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5326    2.4450    2.1845 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2720    4.2902    0.0102 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9258    4.3826    0.9910 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  4  5  2  0
  4  6  1  0
  6  7  1  0
  7  8  2  0
  8  9  1  0
  9 10  2  0
 10 11  1  0
 11 12  2  0
  6 13  1  0
 13 14  1  0
 14 15  1  0
 15 16  1  0
 14  6  1  0
 12  7  1  0
  1 17  1  0
  1 18  1  0
  1 19  1  0
  2 20  1  0
  2 21  1  0
  3 22  1  0
  8 23  1  0
  9 24  1  0
 10 25  1  0
 11 26  1  0
 12 27  1  0
 13 28  1  0
 13 29  1  0
 14 30  1  0
 15 31  1  0
 15 32  1  0
 16 33  1  0
 16 34  1  0
M  END

View in JSmol View Stereo Labels

Synonyms

Value	Source
2-(Aminomethyl)-N-ethyl-1-phenylcyclopropane-1-carboximidate	HMDB

Chemical Formula

C₁₃H₁₈N₂O

Average Molecular Weight

218.3

Monoisotopic Molecular Weight

218.141913208

IUPAC Name

2-(aminomethyl)-N-ethyl-1-phenylcyclopropane-1-carboxamide

Traditional Name

2-(aminomethyl)-N-ethyl-1-phenylcyclopropane-1-carboxamide

CAS Registry Number

Not Available

SMILES

CCNC(=O)C1(CC1CN)C1=CC=CC=C1

InChI Identifier

InChI=1S/C13H18N2O/c1-2-15-12(16)13(8-11(13)9-14)10-6-4-3-5-7-10/h3-7,11H,2,8-9,14H2,1H3,(H,15,16)

InChI Key

UVKUMJGXPDEXSQ-UHFFFAOYSA-N

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as phenylacetamides. These are amide derivatives of phenylacetic acids.

Kingdom

Organic compounds

Super Class

Benzenoids

Class

Benzene and substituted derivatives

Sub Class

Phenylacetamides

Direct Parent

Phenylacetamides

Alternative Parents

Substituents

Phenylacetamide
Aralkylamine
Cyclopropanecarboxylic acid or derivatives
Amino acid or derivatives
Carboxamide group
Secondary carboxylic acid amide
Carboxylic acid derivative
Primary amine
Organooxygen compound
Organonitrogen compound
Primary aliphatic amine
Organic nitrogen compound
Amine
Carbonyl group
Organic oxygen compound
Organic oxide
Hydrocarbon derivative
Aromatic homomonocyclic compound

Molecular Framework

Aromatic homomonocyclic compounds

External Descriptors

Not Available

Ontology

Physiological effect

Not Available

Disposition

Biological location

Non-excretory biofluid

Biofluid or Excreta

Blood (PMID: 31557052)

Source

Exogenous

Exogenous (PMID: 31557052)

Process

Not Available

Role

Not Available

Physical Properties

State

Not Available

Experimental Molecular Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Experimental Chromatographic Properties

Not Available

Predicted Molecular Properties

Property	Value	Source
logP	1.25	ALOGPS
logP	0.84	ChemAxon
logS	-2.8	ALOGPS
pKa (Strongest Acidic)	15.92	ChemAxon
pKa (Strongest Basic)	9.83	ChemAxon
Physiological Charge	1	ChemAxon
Hydrogen Acceptor Count	2	ChemAxon
Hydrogen Donor Count	2	ChemAxon
Polar Surface Area	55.12 Å²	ChemAxon
Rotatable Bond Count	4	ChemAxon
Refractivity	64.16 m³·mol⁻¹	ChemAxon
Polarizability	24.62 Å³	ChemAxon
Number of Rings	2	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

Predicted Chromatographic Properties

Predicted Collision Cross Sections

Predictor	Adduct Type	CCS Value (Å²)	Reference
DeepCCS	[M+H]+	151.628	30932474
DeepCCS	[M-H]-	149.27	30932474
DeepCCS	[M-2H]-	182.895	30932474
DeepCCS	[M+Na]+	157.806	30932474
AllCCS	[M+H]+	150.1	32859911
AllCCS	[M+H-H2O]+	146.1	32859911
AllCCS	[M+NH4]+	153.7	32859911
AllCCS	[M+Na]+	154.7	32859911
AllCCS	[M-H]-	154.9	32859911
AllCCS	[M+Na-2H]-	155.2	32859911
AllCCS	[M+HCOO]-	155.6	32859911

Predicted Kovats Retention Indices

Underivatized

Metabolite	SMILES	Kovats RI Value	Column Type	Reference
N-Desethyl Milnacipran	CCNC(=O)C1(CC1CN)C1=CC=CC=C1	2605.6	Standard polar	33892256
N-Desethyl Milnacipran	CCNC(=O)C1(CC1CN)C1=CC=CC=C1	1918.9	Standard non polar	33892256
N-Desethyl Milnacipran	CCNC(=O)C1(CC1CN)C1=CC=CC=C1	1830.8	Semi standard non polar	33892256

Derivatized

Derivative Name / Structure	SMILES	Kovats RI Value	Column Type	Reference
N-Desethyl Milnacipran,1TMS,isomer #1	CCNC(=O)C1(C2=CC=CC=C2)CC1CN[Si](C)(C)C	2020.7	Semi standard non polar	33892256
N-Desethyl Milnacipran,1TMS,isomer #1	CCNC(=O)C1(C2=CC=CC=C2)CC1CN[Si](C)(C)C	2003.0	Standard non polar	33892256
N-Desethyl Milnacipran,1TMS,isomer #1	CCNC(=O)C1(C2=CC=CC=C2)CC1CN[Si](C)(C)C	2450.8	Standard polar	33892256
N-Desethyl Milnacipran,1TMS,isomer #2	CCN(C(=O)C1(C2=CC=CC=C2)CC1CN)[Si](C)(C)C	1897.8	Semi standard non polar	33892256
N-Desethyl Milnacipran,1TMS,isomer #2	CCN(C(=O)C1(C2=CC=CC=C2)CC1CN)[Si](C)(C)C	2032.0	Standard non polar	33892256
N-Desethyl Milnacipran,1TMS,isomer #2	CCN(C(=O)C1(C2=CC=CC=C2)CC1CN)[Si](C)(C)C	2582.3	Standard polar	33892256
N-Desethyl Milnacipran,2TMS,isomer #1	CCN(C(=O)C1(C2=CC=CC=C2)CC1CN[Si](C)(C)C)[Si](C)(C)C	2015.0	Semi standard non polar	33892256
N-Desethyl Milnacipran,2TMS,isomer #1	CCN(C(=O)C1(C2=CC=CC=C2)CC1CN[Si](C)(C)C)[Si](C)(C)C	2175.5	Standard non polar	33892256
N-Desethyl Milnacipran,2TMS,isomer #1	CCN(C(=O)C1(C2=CC=CC=C2)CC1CN[Si](C)(C)C)[Si](C)(C)C	2323.6	Standard polar	33892256
N-Desethyl Milnacipran,2TMS,isomer #2	CCNC(=O)C1(C2=CC=CC=C2)CC1CN([Si](C)(C)C)[Si](C)(C)C	2146.9	Semi standard non polar	33892256
N-Desethyl Milnacipran,2TMS,isomer #2	CCNC(=O)C1(C2=CC=CC=C2)CC1CN([Si](C)(C)C)[Si](C)(C)C	2261.5	Standard non polar	33892256
N-Desethyl Milnacipran,2TMS,isomer #2	CCNC(=O)C1(C2=CC=CC=C2)CC1CN([Si](C)(C)C)[Si](C)(C)C	2390.6	Standard polar	33892256
N-Desethyl Milnacipran,3TMS,isomer #1	CCN(C(=O)C1(C2=CC=CC=C2)CC1CN([Si](C)(C)C)[Si](C)(C)C)[Si](C)(C)C	2166.7	Semi standard non polar	33892256
N-Desethyl Milnacipran,3TMS,isomer #1	CCN(C(=O)C1(C2=CC=CC=C2)CC1CN([Si](C)(C)C)[Si](C)(C)C)[Si](C)(C)C	2381.0	Standard non polar	33892256
N-Desethyl Milnacipran,3TMS,isomer #1	CCN(C(=O)C1(C2=CC=CC=C2)CC1CN([Si](C)(C)C)[Si](C)(C)C)[Si](C)(C)C	2270.2	Standard polar	33892256
N-Desethyl Milnacipran,1TBDMS,isomer #1	CCNC(=O)C1(C2=CC=CC=C2)CC1CN[Si](C)(C)C(C)(C)C	2260.1	Semi standard non polar	33892256
N-Desethyl Milnacipran,1TBDMS,isomer #1	CCNC(=O)C1(C2=CC=CC=C2)CC1CN[Si](C)(C)C(C)(C)C	2264.9	Standard non polar	33892256
N-Desethyl Milnacipran,1TBDMS,isomer #1	CCNC(=O)C1(C2=CC=CC=C2)CC1CN[Si](C)(C)C(C)(C)C	2573.0	Standard polar	33892256
N-Desethyl Milnacipran,1TBDMS,isomer #2	CCN(C(=O)C1(C2=CC=CC=C2)CC1CN)[Si](C)(C)C(C)(C)C	2147.6	Semi standard non polar	33892256
N-Desethyl Milnacipran,1TBDMS,isomer #2	CCN(C(=O)C1(C2=CC=CC=C2)CC1CN)[Si](C)(C)C(C)(C)C	2280.2	Standard non polar	33892256
N-Desethyl Milnacipran,1TBDMS,isomer #2	CCN(C(=O)C1(C2=CC=CC=C2)CC1CN)[Si](C)(C)C(C)(C)C	2682.5	Standard polar	33892256
N-Desethyl Milnacipran,2TBDMS,isomer #1	CCN(C(=O)C1(C2=CC=CC=C2)CC1CN[Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C	2460.9	Semi standard non polar	33892256
N-Desethyl Milnacipran,2TBDMS,isomer #1	CCN(C(=O)C1(C2=CC=CC=C2)CC1CN[Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C	2633.3	Standard non polar	33892256
N-Desethyl Milnacipran,2TBDMS,isomer #1	CCN(C(=O)C1(C2=CC=CC=C2)CC1CN[Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C	2572.6	Standard polar	33892256
N-Desethyl Milnacipran,2TBDMS,isomer #2	CCNC(=O)C1(C2=CC=CC=C2)CC1CN([Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C	2630.5	Semi standard non polar	33892256
N-Desethyl Milnacipran,2TBDMS,isomer #2	CCNC(=O)C1(C2=CC=CC=C2)CC1CN([Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C	2667.4	Standard non polar	33892256
N-Desethyl Milnacipran,2TBDMS,isomer #2	CCNC(=O)C1(C2=CC=CC=C2)CC1CN([Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C	2584.5	Standard polar	33892256
N-Desethyl Milnacipran,3TBDMS,isomer #1	CCN(C(=O)C1(C2=CC=CC=C2)CC1CN([Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C	2839.1	Semi standard non polar	33892256
N-Desethyl Milnacipran,3TBDMS,isomer #1	CCN(C(=O)C1(C2=CC=CC=C2)CC1CN([Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C	2967.8	Standard non polar	33892256
N-Desethyl Milnacipran,3TBDMS,isomer #1	CCN(C(=O)C1(C2=CC=CC=C2)CC1CN([Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C	2574.2	Standard polar	33892256

Spectra

GC-MS Spectra

Spectrum Type	Description	Splash Key	Deposition Date	Source	View
Predicted GC-MS	Predicted GC-MS Spectrum - N-Desethyl Milnacipran GC-MS (Non-derivatized) - 70eV, Positive	splash10-008a-8900000000-4a8d81c447fa89998279	2021-09-23	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - N-Desethyl Milnacipran GC-MS (Non-derivatized) - 70eV, Positive	Not Available	2021-10-12	Wishart Lab	View Spectrum

Biological Properties

Cellular Locations

Not Available

Biospecimen Locations

Blood

Tissue Locations

Not Available

Pathways

Not Available

Name	SMPDB/PathBank	KEGG

Normal Concentrations

Biospecimen	Status	Value	Age	Sex	Condition	Reference	Details
Blood	Detected but not Quantified	Not Quantified	Not Specified	Not Specified	Normal	31557052	details

Abnormal Concentrations

Not Available

Associated Disorders and Diseases

Disease References

None

Associated OMIM IDs

None

External Links

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FooDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

19725406

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

13718739

PDB ID

Not Available

ChEBI ID

Not Available

Food Biomarker Ontology

Not Available

VMH ID

Not Available

MarkerDB ID

Not Available

Good Scents ID

Not Available

References

Synthesis Reference

Not Available

Material Safety Data Sheet (MSDS)

Not Available

General References

Barupal DK, Fiehn O: Generating the Blood Exposome Database Using a Comprehensive Text Mining and Database Fusion Approach. Environ Health Perspect. 2019 Sep;127(9):97008. doi: 10.1289/EHP4713. Epub 2019 Sep 26. [PubMed:31557052 ]

Showing metabocard for N-Desethyl Milnacipran (HMDB0255113)

MOL for HMDB0255113 (N-Desethyl Milnacipran)

3D MOL for HMDB0255113 (N-Desethyl Milnacipran)

3D SDF for HMDB0255113 (N-Desethyl Milnacipran)

3D-SDF for HMDB0255113 (N-Desethyl Milnacipran)

PDB for HMDB0255113 (N-Desethyl Milnacipran)

3D PDB for HMDB0255113 (N-Desethyl Milnacipran)

SMILES for HMDB0255113 (N-Desethyl Milnacipran)

INCHI for HMDB0255113 (N-Desethyl Milnacipran)

Structure for HMDB0255113 (N-Desethyl Milnacipran)

3D Structure for HMDB0255113 (N-Desethyl Milnacipran)

Predicted Collision Cross Sections

Predicted Kovats Retention Indices

Underivatized

Derivatized

GC-MS Spectra