Hmdb loader
Record Information
Version5.0
StatusDetected but not Quantified
Creation Date2021-09-11 16:41:25 UTC
Update Date2021-09-26 23:11:55 UTC
HMDB IDHMDB0256331
Secondary Accession NumbersNone
Metabolite Identification
Common NamePerfluorovaleric acid
Descriptionperfluoropentanoic acid, also known as nonafluoro-1-pentanoate or perfluorovalerate, belongs to the class of organic compounds known as perfluoroalkyl carboxylic acid and derivatives. These are organic compounds containing an alkyl chain attached to the C-alpha of a carboxylic acid group (or a derivative thereof), where all hydrogens of the alkyl chain are replaced by fluorine atoms. Based on a literature review a significant number of articles have been published on perfluoropentanoic acid. This compound has been identified in human blood as reported by (PMID: 31557052 ). Perfluorovaleric acid is not a naturally occurring metabolite and is only found in those individuals exposed to this compound or its derivatives. Technically Perfluorovaleric acid is part of the human exposome. The exposome can be defined as the collection of all the exposures of an individual in a lifetime and how those exposures relate to health. An individual's exposure begins before birth and includes insults from environmental and occupational sources.
Structure
Thumb
Synonyms
ValueSource
2,2,3,3,4,4,5,5,5-Nonafluoropentanoic acidChEBI
Nonafluoro-1-pentanoic acidChEBI
Perfluorovaleric acidChEBI
2,2,3,3,4,4,5,5,5-NonafluoropentanoateGenerator
Nonafluoro-1-pentanoateGenerator
PerfluorovalerateGenerator
PerfluoropentanoateGenerator
Chemical FormulaC5HF9O2
Average Molecular Weight264.047
Monoisotopic Molecular Weight263.983282739
IUPAC Namenonafluoropentanoic acid
Traditional Namenonafluoropentanoic acid
CAS Registry NumberNot Available
SMILES
OC(=O)C(F)(F)C(F)(F)C(F)(F)C(F)(F)F
InChI Identifier
InChI=1S/C5HF9O2/c6-2(7,1(15)16)3(8,9)4(10,11)5(12,13)14/h(H,15,16)
InChI KeyCXZGQIAOTKWCDB-UHFFFAOYSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as perfluoroalkyl carboxylic acid and derivatives. These are organic compounds containing an alkyl chain attached to the C-alpha of a carboxylic acid group (or a derivative thereof), where all hydrogens of the alkyl chain are replaced by fluorine atoms.
KingdomOrganic compounds
Super ClassOrganohalogen compounds
ClassAlkyl halides
Sub ClassAlkyl fluorides
Direct ParentPerfluoroalkyl carboxylic acid and derivatives
Alternative Parents
Substituents
  • Perfluoroalkyl carboxylic acid or derivatives
  • Halogenated fatty acid
  • Fatty acyl
  • Fatty acid
  • Alpha-halocarboxylic acid
  • Alpha-halocarboxylic acid or derivatives
  • Carboxylic acid derivative
  • Carboxylic acid
  • Monocarboxylic acid or derivatives
  • Hydrocarbon derivative
  • Organic oxygen compound
  • Carbonyl group
  • Organic oxide
  • Organofluoride
  • Organooxygen compound
  • Aliphatic acyclic compound
Molecular FrameworkAliphatic acyclic compounds
External Descriptors
Ontology
Physiological effectNot Available
Disposition
ProcessNot Available
RoleNot Available
Physical Properties
StateNot Available
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
logP2.93ALOGPS
logP3.01ChemAxon
logS-4ALOGPS
pKa (Strongest Acidic)0.34ChemAxon
Physiological Charge-1ChemAxon
Hydrogen Acceptor Count2ChemAxon
Hydrogen Donor Count1ChemAxon
Polar Surface Area37.3 ŲChemAxon
Rotatable Bond Count4ChemAxon
Refractivity27.66 m³·mol⁻¹ChemAxon
Polarizability12.03 ųChemAxon
Number of Rings0ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterNoChemAxon
Veber's RuleYesChemAxon
MDDR-like RuleNoChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
DeepCCS[M+H]+149.26130932474
DeepCCS[M-H]-146.86530932474
DeepCCS[M-2H]-180.51530932474
DeepCCS[M+Na]+155.27830932474
AllCCS[M+H]+151.232859911
AllCCS[M+H-H2O]+147.832859911
AllCCS[M+NH4]+154.432859911
AllCCS[M+Na]+155.332859911
AllCCS[M-H]-132.332859911
AllCCS[M+Na-2H]-132.532859911
AllCCS[M+HCOO]-132.732859911

Predicted Kovats Retention Indices

Underivatized

MetaboliteSMILESKovats RI ValueColumn TypeReference
Perfluorovaleric acidOC(=O)C(F)(F)C(F)(F)C(F)(F)C(F)(F)F1077.5Standard polar33892256
Perfluorovaleric acidOC(=O)C(F)(F)C(F)(F)C(F)(F)C(F)(F)F874.4Standard non polar33892256
Perfluorovaleric acidOC(=O)C(F)(F)C(F)(F)C(F)(F)C(F)(F)F1024.4Semi standard non polar33892256
Spectra

GC-MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted GC-MSPredicted GC-MS Spectrum - Perfluorovaleric acid GC-MS (Non-derivatized) - 70eV, Positivesplash10-00kf-4950000000-4a2ffcef238795892b152021-09-24Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Perfluorovaleric acid GC-MS (Non-derivatized) - 70eV, PositiveNot Available2021-10-12Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Perfluorovaleric acid GC-MS (TMS_1_1) - 70eV, PositiveNot Available2021-11-05Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Perfluorovaleric acid GC-MS (TBDMS_1_1) - 70eV, PositiveNot Available2021-11-05Wishart LabView Spectrum

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Experimental LC-MS/MSLC-MS/MS Spectrum - Perfluorovaleric acid 30V, Negative-QTOFsplash10-014i-0090000000-d2c7eecc9779a84dafed2021-09-20HMDB team, MONAView Spectrum
Experimental LC-MS/MSLC-MS/MS Spectrum - Perfluorovaleric acid 10V, Negative-QTOFsplash10-014i-0090000000-5df85a4fddefc92f99fd2021-09-20HMDB team, MONAView Spectrum
Experimental LC-MS/MSLC-MS/MS Spectrum - Perfluorovaleric acid 20V, Negative-QTOFsplash10-014i-0090000000-fd4114ee5063f5c37a9b2021-09-20HMDB team, MONAView Spectrum
Experimental LC-MS/MSLC-MS/MS Spectrum - Perfluorovaleric acid 15V, Negative-QTOFsplash10-014i-0090000000-bdaf054ca424e0ee8d3d2021-09-20HMDB team, MONAView Spectrum
Experimental LC-MS/MSLC-MS/MS Spectrum - Perfluorovaleric acid 35V, Negative-QTOFsplash10-014i-0090000000-3ef7f80e8b5f7bcb15522021-09-20HMDB team, MONAView Spectrum
Experimental LC-MS/MSLC-MS/MS Spectrum - Perfluorovaleric acid 90V, Negative-QTOFsplash10-014i-0090000000-37388e20bda94bb654f12021-09-20HMDB team, MONAView Spectrum
Experimental LC-MS/MSLC-MS/MS Spectrum - Perfluorovaleric acid 15V, Negative-QTOFsplash10-014i-0090000000-3792a299c628b980fb992021-09-20HMDB team, MONAView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Perfluorovaleric acid 10V, Positive-QTOFsplash10-03di-0090000000-f96e878821f63ae228f52016-08-01Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Perfluorovaleric acid 20V, Positive-QTOFsplash10-03di-0090000000-7ce16ab0ac46d10e95212016-08-01Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Perfluorovaleric acid 40V, Positive-QTOFsplash10-0fdo-9780000000-11df4f65efa053c5c7e12016-08-01Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Perfluorovaleric acid 10V, Negative-QTOFsplash10-03xr-0090000000-0769380c4224abe307822016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Perfluorovaleric acid 20V, Negative-QTOFsplash10-03di-0090000000-763b4152b694380d7a792016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Perfluorovaleric acid 40V, Negative-QTOFsplash10-014i-0590000000-ce17a3d21d3a9f1398752016-08-03Wishart LabView Spectrum
Biological Properties
Cellular LocationsNot Available
Biospecimen Locations
  • Blood
Tissue LocationsNot Available
Pathways
Normal Concentrations
BiospecimenStatusValueAgeSexConditionReferenceDetails
BloodDetected but not QuantifiedNot QuantifiedNot SpecifiedNot SpecifiedNormal details
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDNot Available
KNApSAcK IDNot Available
Chemspider ID68426
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem CompoundNot Available
PDB IDNot Available
ChEBI ID83491
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General References
  1. Barupal DK, Fiehn O: Generating the Blood Exposome Database Using a Comprehensive Text Mining and Database Fusion Approach. Environ Health Perspect. 2019 Sep;127(9):97008. doi: 10.1289/EHP4713. Epub 2019 Sep 26. [PubMed:31557052 ]