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Record Information

Version

5.0

Status

Detected but not Quantified

Creation Date

2021-09-11 16:42:45 UTC

Update Date

2021-09-26 23:11:57 UTC

HMDB ID

HMDB0256353

Secondary Accession Numbers

None

Metabolite Identification

Common Name

Perylene

Description

perylene, also known as alpha-perylene, belongs to the class of organic compounds known as phenanthrenes and derivatives. These are polycyclic compounds containing a phenanthrene moiety, which is a tricyclic aromatic compound with three non-linearly fused benzene. Based on a literature review very few articles have been published on perylene. This compound has been identified in human blood as reported by (PMID: 31557052 ). Perylene is not a naturally occurring metabolite and is only found in those individuals exposed to this compound or its derivatives. Technically Perylene is part of the human exposome. The exposome can be defined as the collection of all the exposures of an individual in a lifetime and how those exposures relate to health. An individual's exposure begins before birth and includes insults from environmental and occupational sources.

Structure

MOL 3D MOL SDF 3D SDF PDB 3D PDB SMILES InChI

HMDB0256353
     RDKit          3D
Perylene
 32 36  0  0  0  0  0  0  0  0999 V2000
   -2.2204    2.9237    0.0547 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1459    1.9179    0.0576 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7258    0.5983    0.0404 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6579   -0.4192    0.0433 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2557   -1.7259    0.0264 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8870   -2.0198    0.0062 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9363   -1.0262    0.0028 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4002   -1.3362   -0.0171 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8099   -2.6596   -0.0342 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1727   -2.8774   -0.0537 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1302   -1.8898   -0.0571 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6767   -0.5883   -0.0397 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6511    0.4129   -0.0432 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2222    1.7019   -0.0262 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8633    2.0336   -0.0057 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9460    1.0130   -0.0031 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4019    1.3243    0.0170 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8526    2.6249    0.0345 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3686    0.3071    0.0203 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3275   -0.3132   -0.0199 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4675    3.9761    0.0673 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1921    2.1353    0.0730 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7106   -0.1568    0.0591 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9336   -2.5632    0.0276 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5808   -3.0443   -0.0069 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.1853   -3.5064   -0.0338 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.5531   -3.9091   -0.0678 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.1993   -2.1054   -0.0728 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.7033    0.1911   -0.0587 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.9738    2.4810   -0.0288 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.6551    3.0769    0.0063 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1329    3.4228    0.0323 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0
  2  3  1  0
  3  4  2  0
  4  5  1  0
  5  6  2  0
  6  7  1  0
  7  8  1  0
  8  9  1  0
  9 10  2  0
 10 11  1  0
 11 12  2  0
 12 13  1  0
 13 14  2  0
 14 15  1  0
 15 16  2  0
 16 17  1  0
 17 18  2  0
 17 19  1  0
 16 20  1  0
 18  1  1  0
 19  3  1  0
 19  7  2  0
 20  8  2  0
 20 12  1  0
  1 21  1  0
  2 22  1  0
  4 23  1  0
  5 24  1  0
  6 25  1  0
  9 26  1  0
 10 27  1  0
 11 28  1  0
 13 29  1  0
 14 30  1  0
 15 31  1  0
 18 32  1  0
M  END


  Mrv1652304272019092D          

 20 24  0  0  0  0            999 V2000
    0.8250    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6500   -1.4290    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8250    2.8579    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3000    1.4290    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4125   -0.7144    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8250   -1.4290    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6500    2.8579    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8875    2.1434    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4125    0.7144    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4125    2.1434    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0625   -0.7144    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8875    0.7144    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4125   -0.7144    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0625    2.1434    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4125    0.7144    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8250    1.4290    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6500    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0625    0.7144    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8250    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6500    1.4290    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  5  2  0  0  0  0
  1  9  1  0  0  0  0
  2  6  1  0  0  0  0
  2 11  2  0  0  0  0
  3  7  2  0  0  0  0
  3 10  1  0  0  0  0
  4  8  2  0  0  0  0
  4 12  1  0  0  0  0
  5 13  1  0  0  0  0
  6 13  2  0  0  0  0
  7 14  1  0  0  0  0
  8 14  1  0  0  0  0
  9 15  2  0  0  0  0
 10 16  2  0  0  0  0
 11 17  1  0  0  0  0
 12 18  2  0  0  0  0
 13 19  1  0  0  0  0
 14 20  2  0  0  0  0
 15 16  1  0  0  0  0
 15 19  1  0  0  0  0
 16 20  1  0  0  0  0
 17 18  1  0  0  0  0
 17 19  2  0  0  0  0
 18 20  1  0  0  0  0
M  END
> <DATABASE_ID>
HMDB0256353

> <DATABASE_NAME>
hmdb

> <SMILES>
C1=CC2=CC=CC3=C2C(=C1)C1=CC=CC2=C1C3=CC=C2

> <INCHI_IDENTIFIER>
InChI=1S/C20H12/c1-5-13-6-2-11-17-18-12-4-8-14-7-3-10-16(20(14)18)15(9-1)19(13)17/h1-12H

> <INCHI_KEY>
CSHWQDPOILHKBI-UHFFFAOYSA-N

> <FORMULA>
C20H12

> <MOLECULAR_WEIGHT>
252.316

> <EXACT_MASS>
252.093900386

> <JCHEM_ACCEPTOR_COUNT>
0

> <JCHEM_ATOM_COUNT>
32

> <JCHEM_AVERAGE_POLARIZABILITY>
28.86810359024942

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
0

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
perylene

> <ALOGPS_LOGP>
6.34

> <JCHEM_LOGP>
5.273404237333333

> <ALOGPS_LOGS>
-8.27

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
5

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_POLAR_SURFACE_AREA>
0.0

> <JCHEM_REFRACTIVITY>
83.1728

> <JCHEM_ROTATABLE_BOND_COUNT>
0

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
1.35e-06 g/l

> <JCHEM_TRADITIONAL_IUPAC>
perylene

> <JCHEM_VEBER_RULE>
1

$$$$

HMDB0256353
     RDKit          3D
Perylene
 32 36  0  0  0  0  0  0  0  0999 V2000
   -2.2204    2.9237    0.0547 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1459    1.9179    0.0576 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7258    0.5983    0.0404 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6579   -0.4192    0.0433 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2557   -1.7259    0.0264 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8870   -2.0198    0.0062 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9363   -1.0262    0.0028 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4002   -1.3362   -0.0171 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8099   -2.6596   -0.0342 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1727   -2.8774   -0.0537 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1302   -1.8898   -0.0571 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6767   -0.5883   -0.0397 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6511    0.4129   -0.0432 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2222    1.7019   -0.0262 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8633    2.0336   -0.0057 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9460    1.0130   -0.0031 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4019    1.3243    0.0170 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8526    2.6249    0.0345 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3686    0.3071    0.0203 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3275   -0.3132   -0.0199 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4675    3.9761    0.0673 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1921    2.1353    0.0730 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7106   -0.1568    0.0591 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9336   -2.5632    0.0276 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5808   -3.0443   -0.0069 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.1853   -3.5064   -0.0338 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.5531   -3.9091   -0.0678 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.1993   -2.1054   -0.0728 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.7033    0.1911   -0.0587 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.9738    2.4810   -0.0288 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.6551    3.0769    0.0063 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1329    3.4228    0.0323 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0
  2  3  1  0
  3  4  2  0
  4  5  1  0
  5  6  2  0
  6  7  1  0
  7  8  1  0
  8  9  1  0
  9 10  2  0
 10 11  1  0
 11 12  2  0
 12 13  1  0
 13 14  2  0
 14 15  1  0
 15 16  2  0
 16 17  1  0
 17 18  2  0
 17 19  1  0
 16 20  1  0
 18  1  1  0
 19  3  1  0
 19  7  2  0
 20  8  2  0
 20 12  1  0
  1 21  1  0
  2 22  1  0
  4 23  1  0
  5 24  1  0
  6 25  1  0
  9 26  1  0
 10 27  1  0
 11 28  1  0
 13 29  1  0
 14 30  1  0
 15 31  1  0
 18 32  1  0
M  END

HEADER    PROTEIN                                 27-APR-20   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   27-APR-20         0                                  
HETATM    1  C   UNK     0       1.540   0.000   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      -3.080  -2.667   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0      -1.540   5.335   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0      -6.160   2.667   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       0.770  -1.334   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0      -1.540  -2.667   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0      -3.080   5.335   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0      -5.390   4.001   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       0.770   1.334   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0      -0.770   4.001   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0      -3.850  -1.334   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0      -5.390   1.334   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0      -0.770  -1.334   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0      -3.850   4.001   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0      -0.770   1.334   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0      -1.540   2.667   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0      -3.080   0.000   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0      -3.850   1.334   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0      -1.540   0.000   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0      -3.080   2.667   0.000  0.00  0.00           C+0
CONECT    1    5    9                                                       
CONECT    2    6   11                                                       
CONECT    3    7   10                                                       
CONECT    4    8   12                                                       
CONECT    5    1   13                                                       
CONECT    6    2   13                                                       
CONECT    7    3   14                                                       
CONECT    8    4   14                                                       
CONECT    9    1   15                                                       
CONECT   10    3   16                                                       
CONECT   11    2   17                                                       
CONECT   12    4   18                                                       
CONECT   13    5    6   19                                                  
CONECT   14    7    8   20                                                  
CONECT   15    9   16   19                                                  
CONECT   16   10   15   20                                                  
CONECT   17   11   18   19                                                  
CONECT   18   12   17   20                                                  
CONECT   19   13   15   17                                                  
CONECT   20   14   16   18                                                  
MASTER        0    0    0    0    0    0    0    0   20    0   48    0
END

COMPND    HMDB0256353
HETATM    1  C1  UNL     1      -2.220   2.924   0.055  1.00  0.00           C  
HETATM    2  C2  UNL     1      -3.146   1.918   0.058  1.00  0.00           C  
HETATM    3  C3  UNL     1      -2.726   0.598   0.040  1.00  0.00           C  
HETATM    4  C4  UNL     1      -3.658  -0.419   0.043  1.00  0.00           C  
HETATM    5  C5  UNL     1      -3.256  -1.726   0.026  1.00  0.00           C  
HETATM    6  C6  UNL     1      -1.887  -2.020   0.006  1.00  0.00           C  
HETATM    7  C7  UNL     1      -0.936  -1.026   0.003  1.00  0.00           C  
HETATM    8  C8  UNL     1       0.400  -1.336  -0.017  1.00  0.00           C  
HETATM    9  C9  UNL     1       0.810  -2.660  -0.034  1.00  0.00           C  
HETATM   10  C10 UNL     1       2.173  -2.877  -0.054  1.00  0.00           C  
HETATM   11  C11 UNL     1       3.130  -1.890  -0.057  1.00  0.00           C  
HETATM   12  C12 UNL     1       2.677  -0.588  -0.040  1.00  0.00           C  
HETATM   13  C13 UNL     1       3.651   0.413  -0.043  1.00  0.00           C  
HETATM   14  C14 UNL     1       3.222   1.702  -0.026  1.00  0.00           C  
HETATM   15  C15 UNL     1       1.863   2.034  -0.006  1.00  0.00           C  
HETATM   16  C16 UNL     1       0.946   1.013  -0.003  1.00  0.00           C  
HETATM   17  C17 UNL     1      -0.402   1.324   0.017  1.00  0.00           C  
HETATM   18  C18 UNL     1      -0.853   2.625   0.034  1.00  0.00           C  
HETATM   19  C19 UNL     1      -1.369   0.307   0.020  1.00  0.00           C  
HETATM   20  C20 UNL     1       1.327  -0.313  -0.020  1.00  0.00           C  
HETATM   21  H1  UNL     1      -2.467   3.976   0.067  1.00  0.00           H  
HETATM   22  H2  UNL     1      -4.192   2.135   0.073  1.00  0.00           H  
HETATM   23  H3  UNL     1      -4.711  -0.157   0.059  1.00  0.00           H  
HETATM   24  H4  UNL     1      -3.934  -2.563   0.028  1.00  0.00           H  
HETATM   25  H5  UNL     1      -1.581  -3.044  -0.007  1.00  0.00           H  
HETATM   26  H6  UNL     1       0.185  -3.506  -0.034  1.00  0.00           H  
HETATM   27  H7  UNL     1       2.553  -3.909  -0.068  1.00  0.00           H  
HETATM   28  H8  UNL     1       4.199  -2.105  -0.073  1.00  0.00           H  
HETATM   29  H9  UNL     1       4.703   0.191  -0.059  1.00  0.00           H  
HETATM   30  H10 UNL     1       3.974   2.481  -0.029  1.00  0.00           H  
HETATM   31  H11 UNL     1       1.655   3.077   0.006  1.00  0.00           H  
HETATM   32  H12 UNL     1      -0.133   3.423   0.032  1.00  0.00           H  
CONECT    1    2    2   18   21
CONECT    2    3   22
CONECT    3    4    4   19
CONECT    4    5   23
CONECT    5    6    6   24
CONECT    6    7   25
CONECT    7    8   19   19
CONECT    8    9   20   20
CONECT    9   10   10   26
CONECT   10   11   27
CONECT   11   12   12   28
CONECT   12   13   20
CONECT   13   14   14   29
CONECT   14   15   30
CONECT   15   16   16   31
CONECT   16   17   20
CONECT   17   18   18   19
CONECT   18   32
END

HMDB0256353
     RDKit          3D
Perylene
 32 36  0  0  0  0  0  0  0  0999 V2000
   -2.2204    2.9237    0.0547 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1459    1.9179    0.0576 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7258    0.5983    0.0404 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6579   -0.4192    0.0433 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2557   -1.7259    0.0264 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8870   -2.0198    0.0062 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9363   -1.0262    0.0028 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4002   -1.3362   -0.0171 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8099   -2.6596   -0.0342 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1727   -2.8774   -0.0537 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1302   -1.8898   -0.0571 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6767   -0.5883   -0.0397 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6511    0.4129   -0.0432 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2222    1.7019   -0.0262 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8633    2.0336   -0.0057 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9460    1.0130   -0.0031 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4019    1.3243    0.0170 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8526    2.6249    0.0345 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3686    0.3071    0.0203 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3275   -0.3132   -0.0199 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4675    3.9761    0.0673 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1921    2.1353    0.0730 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7106   -0.1568    0.0591 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9336   -2.5632    0.0276 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5808   -3.0443   -0.0069 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.1853   -3.5064   -0.0338 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.5531   -3.9091   -0.0678 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.1993   -2.1054   -0.0728 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.7033    0.1911   -0.0587 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.9738    2.4810   -0.0288 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.6551    3.0769    0.0063 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1329    3.4228    0.0323 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0
  2  3  1  0
  3  4  2  0
  4  5  1  0
  5  6  2  0
  6  7  1  0
  7  8  1  0
  8  9  1  0
  9 10  2  0
 10 11  1  0
 11 12  2  0
 12 13  1  0
 13 14  2  0
 14 15  1  0
 15 16  2  0
 16 17  1  0
 17 18  2  0
 17 19  1  0
 16 20  1  0
 18  1  1  0
 19  3  1  0
 19  7  2  0
 20  8  2  0
 20 12  1  0
  1 21  1  0
  2 22  1  0
  4 23  1  0
  5 24  1  0
  6 25  1  0
  9 26  1  0
 10 27  1  0
 11 28  1  0
 13 29  1  0
 14 30  1  0
 15 31  1  0
 18 32  1  0
M  END

View in JSmol View Stereo Labels

Synonyms

Value	Source
alpha-Perylene	ChEBI
Dibenz[de,KL]anthracene	ChEBI
Peri-dinaphthalene	ChEBI
Perilene	ChEBI
Perylen	ChEBI
a-Perylene	Generator
Α-perylene	Generator
Peri dinaphthalene	MeSH

Chemical Formula

C₂₀H₁₂

Average Molecular Weight

252.316

Monoisotopic Molecular Weight

252.093900386

IUPAC Name

perylene

Traditional Name

perylene

CAS Registry Number

Not Available

SMILES

C1=CC2=CC=CC3=C2C(=C1)C1=CC=CC2=C1C3=CC=C2

InChI Identifier

InChI=1S/C20H12/c1-5-13-6-2-11-17-18-12-4-8-14-7-3-10-16(20(14)18)15(9-1)19(13)17/h1-12H

InChI Key

CSHWQDPOILHKBI-UHFFFAOYSA-N

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as phenanthrenes and derivatives. These are polycyclic compounds containing a phenanthrene moiety, which is a tricyclic aromatic compound with three non-linearly fused benzene.

Kingdom

Organic compounds

Super Class

Benzenoids

Class

Phenanthrenes and derivatives

Sub Class

Not Available

Direct Parent

Phenanthrenes and derivatives

Alternative Parents

Substituents

Phenanthrene
Anthracene
Aromatic hydrocarbon
Polycyclic hydrocarbon
Unsaturated hydrocarbon
Hydrocarbon
Aromatic homopolycyclic compound

Molecular Framework

Aromatic homopolycyclic compounds

External Descriptors

ortho- and peri-fused polycyclic arene (CHEBI:29861 )
perylenes (CHEBI:29861 )

Ontology

Physiological effect

Not Available

Disposition

Biological location

Non-excretory biofluid

Biofluid or Excreta

Blood (PMID: 31557052)

Process

Not Available

Role

Not Available

Physical Properties

State

Not Available

Experimental Molecular Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Experimental Chromatographic Properties

Not Available

Predicted Molecular Properties

Property	Value	Source
logP	6.34	ALOGPS
logP	5.27	ChemAxon
logS	-8.3	ALOGPS
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	0	ChemAxon
Hydrogen Donor Count	0	ChemAxon
Polar Surface Area	0 Å²	ChemAxon
Rotatable Bond Count	0	ChemAxon
Refractivity	83.17 m³·mol⁻¹	ChemAxon
Polarizability	28.87 Å³	ChemAxon
Number of Rings	5	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	Yes	ChemAxon
MDDR-like Rule	No	ChemAxon

Predicted Chromatographic Properties

Predicted Collision Cross Sections

Predictor	Adduct Type	CCS Value (Å²)	Reference
DeepCCS	[M+H]+	161.493	30932474
DeepCCS	[M-H]-	159.135	30932474
DeepCCS	[M-2H]-	192.102	30932474
DeepCCS	[M+Na]+	167.586	30932474
AllCCS	[M+H]+	157.7	32859911
AllCCS	[M+H-H2O]+	153.8	32859911
AllCCS	[M+NH4]+	161.3	32859911
AllCCS	[M+Na]+	162.4	32859911
AllCCS	[M-H]-	163.4	32859911
AllCCS	[M+Na-2H]-	161.7	32859911
AllCCS	[M+HCOO]-	159.9	32859911

Predicted Kovats Retention Indices

Underivatized

Metabolite	SMILES	Kovats RI Value	Column Type	Reference
Perylene	C1=CC2=CC=CC3=C2C(=C1)C1=CC=CC2=C1C3=CC=C2	4055.6	Standard polar	33892256
Perylene	C1=CC2=CC=CC3=C2C(=C1)C1=CC=CC2=C1C3=CC=C2	2764.3	Standard non polar	33892256
Perylene	C1=CC2=CC=CC3=C2C(=C1)C1=CC=CC2=C1C3=CC=C2	2804.7	Semi standard non polar	33892256

Spectra

GC-MS Spectra

Spectrum Type	Description	Splash Key	Deposition Date	Source	View
Predicted GC-MS	Predicted GC-MS Spectrum - Perylene GC-MS (Non-derivatized) - 70eV, Positive	splash10-0udi-0090000000-ebea99eb31c052c931cb	2021-09-24	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - Perylene GC-MS (Non-derivatized) - 70eV, Positive	Not Available	2021-10-12	Wishart Lab	View Spectrum

MS/MS Spectra

Spectrum Type	Description	Splash Key	Deposition Date	Source	View
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - Perylene 10V, Positive-QTOF	splash10-0udi-0090000000-1df9255a31a941895082	2016-08-03	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - Perylene 20V, Positive-QTOF	splash10-0udi-0090000000-1df9255a31a941895082	2016-08-03	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - Perylene 40V, Positive-QTOF	splash10-0udi-0090000000-1df9255a31a941895082	2016-08-03	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - Perylene 10V, Negative-QTOF	splash10-0udi-0090000000-8e786d790b589e9a83ec	2016-08-03	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - Perylene 20V, Negative-QTOF	splash10-0udi-0090000000-8e786d790b589e9a83ec	2016-08-03	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - Perylene 40V, Negative-QTOF	splash10-0udi-0090000000-8e786d790b589e9a83ec	2016-08-03	Wishart Lab	View Spectrum

Biological Properties

Cellular Locations

Not Available

Biospecimen Locations

Blood

Tissue Locations

Not Available

Pathways

Not Available

Name	SMPDB/PathBank	KEGG

Normal Concentrations

Biospecimen	Status	Value	Age	Sex	Condition	Reference	Details
Blood	Detected but not Quantified	Not Quantified	Not Specified	Not Specified	Normal	31557052	details

Abnormal Concentrations

Not Available

Associated Disorders and Diseases

Disease References

None

Associated OMIM IDs

None

External Links

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FooDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

8788

KEGG Compound ID

C19497

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Perylene

METLIN ID

Not Available

PubChem Compound

Not Available

PDB ID

Not Available

ChEBI ID

29861

Food Biomarker Ontology

Not Available

VMH ID

Not Available

MarkerDB ID

Not Available

Good Scents ID

Not Available

References

Synthesis Reference

Not Available

Material Safety Data Sheet (MSDS)

Not Available

General References

Barupal DK, Fiehn O: Generating the Blood Exposome Database Using a Comprehensive Text Mining and Database Fusion Approach. Environ Health Perspect. 2019 Sep;127(9):97008. doi: 10.1289/EHP4713. Epub 2019 Sep 26. [PubMed:31557052 ]

Showing metabocard for Perylene (HMDB0256353)

MOL for HMDB0256353 (Perylene)

3D MOL for HMDB0256353 (Perylene)

3D SDF for HMDB0256353 (Perylene)

3D-SDF for HMDB0256353 (Perylene)

PDB for HMDB0256353 (Perylene)

3D PDB for HMDB0256353 (Perylene)

SMILES for HMDB0256353 (Perylene)

INCHI for HMDB0256353 (Perylene)

Structure for HMDB0256353 (Perylene)

3D Structure for HMDB0256353 (Perylene)

Predicted Collision Cross Sections

Predicted Kovats Retention Indices

Underivatized

GC-MS Spectra

MS/MS Spectra