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Record Information
Version5.0
StatusDetected but not Quantified
Creation Date2021-09-11 17:09:38 UTC
Update Date2021-09-26 23:12:27 UTC
HMDB IDHMDB0256629
Secondary Accession NumbersNone
Metabolite Identification
Common NameGedatolisib
DescriptionGedatolisib belongs to the class of organic compounds known as 1-benzoylpiperidines. 1-benzoylpiperidines are compounds containing a piperidine ring substituted at the 1-position with a benzoyl group. Based on a literature review very few articles have been published on Gedatolisib. This compound has been identified in human blood as reported by (PMID: 31557052 ). Gedatolisib is not a naturally occurring metabolite and is only found in those individuals exposed to this compound or its derivatives. Technically Gedatolisib is part of the human exposome. The exposome can be defined as the collection of all the exposures of an individual in a lifetime and how those exposures relate to health. An individual's exposure begins before birth and includes insults from environmental and occupational sources.
Structure
Thumb
Synonyms
ValueSource
PKI-587gedatolisibChEMBL
1-(4-((4-(dimethylamino)Piperidin-1-yl)carbonyl)phenyl)-3-(4-(4,6-dimorpholin-4-yl-1,3,5-triazin-2-yl)phenyl)ureaMeSH
PKI 587MeSH
Chemical FormulaC32H41N9O4
Average Molecular Weight615.739
Monoisotopic Molecular Weight615.328150836
IUPAC Name1-{4-[4,6-bis(morpholin-4-yl)-1,3,5-triazin-2-yl]phenyl}-3-{4-[4-(dimethylamino)piperidine-1-carbonyl]phenyl}urea
Traditional Name1-{4-[4,6-bis(morpholin-4-yl)-1,3,5-triazin-2-yl]phenyl}-3-{4-[4-(dimethylamino)piperidine-1-carbonyl]phenyl}urea
CAS Registry NumberNot Available
SMILES
CN(C)C1CCN(CC1)C(=O)C1=CC=C(NC(=O)NC2=CC=C(C=C2)C2=NC(=NC(=N2)N2CCOCC2)N2CCOCC2)C=C1
InChI Identifier
InChI=1S/C32H41N9O4/c1-38(2)27-11-13-39(14-12-27)29(42)24-5-9-26(10-6-24)34-32(43)33-25-7-3-23(4-8-25)28-35-30(40-15-19-44-20-16-40)37-31(36-28)41-17-21-45-22-18-41/h3-10,27H,11-22H2,1-2H3,(H2,33,34,43)
InChI KeyDWZAEMINVBZMHQ-UHFFFAOYSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as 1-benzoylpiperidines. 1-Benzoylpiperidines are compounds containing a piperidine ring substituted at the 1-position with a benzoyl group.
KingdomOrganic compounds
Super ClassBenzenoids
ClassBenzene and substituted derivatives
Sub ClassBenzoyl derivatives
Direct Parent1-benzoylpiperidines
Alternative Parents
Substituents
  • N-benzoylpiperidine
  • 1-benzoylpiperidine
  • N-phenylurea
  • Benzamide
  • Benzoic acid or derivatives
  • N-acyl-piperidine
  • 2,4-diamine-s-triazine
  • Dialkylarylamine
  • 4-aminopiperidine
  • Amino-1,3,5-triazine
  • Aminotriazine
  • Morpholine
  • 1,3,5-triazine
  • Oxazinane
  • Piperidine
  • Triazine
  • Tertiary carboxylic acid amide
  • Heteroaromatic compound
  • Tertiary amine
  • Urea
  • Tertiary aliphatic amine
  • Amino acid or derivatives
  • Carboxamide group
  • Organoheterocyclic compound
  • Azacycle
  • Carboxylic acid derivative
  • Dialkyl ether
  • Ether
  • Oxacycle
  • Carbonyl group
  • Organonitrogen compound
  • Hydrocarbon derivative
  • Organic oxygen compound
  • Organic oxide
  • Organic nitrogen compound
  • Organooxygen compound
  • Amine
  • Aromatic heteromonocyclic compound
Molecular FrameworkAromatic heteromonocyclic compounds
External DescriptorsNot Available
Ontology
Physiological effectNot Available
Disposition
ProcessNot Available
RoleNot Available
Physical Properties
StateNot Available
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
logP3.68ALOGPS
logP3.65ChemAxon
logS-4.2ALOGPS
pKa (Strongest Acidic)11.17ChemAxon
pKa (Strongest Basic)9.67ChemAxon
Physiological Charge1ChemAxon
Hydrogen Acceptor Count10ChemAxon
Hydrogen Donor Count2ChemAxon
Polar Surface Area128.29 ŲChemAxon
Rotatable Bond Count7ChemAxon
Refractivity189.15 m³·mol⁻¹ChemAxon
Polarizability67.18 ųChemAxon
Number of Rings6ChemAxon
BioavailabilityYesChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleYesChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
DeepCCS[M+H]+240.85530932474
DeepCCS[M-H]-239.00830932474
DeepCCS[M-2H]-272.24730932474
DeepCCS[M+Na]+246.57230932474
AllCCS[M+H]+241.732859911
AllCCS[M+H-H2O]+240.932859911
AllCCS[M+NH4]+242.532859911
AllCCS[M+Na]+242.732859911
AllCCS[M-H]-219.432859911
AllCCS[M+Na-2H]-222.032859911
AllCCS[M+HCOO]-225.032859911

Predicted Kovats Retention Indices

Underivatized

MetaboliteSMILESKovats RI ValueColumn TypeReference
GedatolisibCN(C)C1CCN(CC1)C(=O)C1=CC=C(NC(=O)NC2=CC=C(C=C2)C2=NC(=NC(=N2)N2CCOCC2)N2CCOCC2)C=C14706.5Standard polar33892256
GedatolisibCN(C)C1CCN(CC1)C(=O)C1=CC=C(NC(=O)NC2=CC=C(C=C2)C2=NC(=NC(=N2)N2CCOCC2)N2CCOCC2)C=C15104.4Standard non polar33892256
GedatolisibCN(C)C1CCN(CC1)C(=O)C1=CC=C(NC(=O)NC2=CC=C(C=C2)C2=NC(=NC(=N2)N2CCOCC2)N2CCOCC2)C=C16122.0Semi standard non polar33892256

Derivatized

Derivative Name / StructureSMILESKovats RI ValueColumn TypeReference
Gedatolisib,1TMS,isomer #1CN(C)C1CCN(C(=O)C2=CC=C(N(C(=O)NC3=CC=C(C4=NC(N5CCOCC5)=NC(N5CCOCC5)=N4)C=C3)[Si](C)(C)C)C=C2)CC15873.6Semi standard non polar33892256
Gedatolisib,1TMS,isomer #1CN(C)C1CCN(C(=O)C2=CC=C(N(C(=O)NC3=CC=C(C4=NC(N5CCOCC5)=NC(N5CCOCC5)=N4)C=C3)[Si](C)(C)C)C=C2)CC14752.2Standard non polar33892256
Gedatolisib,1TMS,isomer #1CN(C)C1CCN(C(=O)C2=CC=C(N(C(=O)NC3=CC=C(C4=NC(N5CCOCC5)=NC(N5CCOCC5)=N4)C=C3)[Si](C)(C)C)C=C2)CC17373.7Standard polar33892256
Gedatolisib,1TMS,isomer #2CN(C)C1CCN(C(=O)C2=CC=C(NC(=O)N(C3=CC=C(C4=NC(N5CCOCC5)=NC(N5CCOCC5)=N4)C=C3)[Si](C)(C)C)C=C2)CC15863.9Semi standard non polar33892256
Gedatolisib,1TMS,isomer #2CN(C)C1CCN(C(=O)C2=CC=C(NC(=O)N(C3=CC=C(C4=NC(N5CCOCC5)=NC(N5CCOCC5)=N4)C=C3)[Si](C)(C)C)C=C2)CC14774.9Standard non polar33892256
Gedatolisib,1TMS,isomer #2CN(C)C1CCN(C(=O)C2=CC=C(NC(=O)N(C3=CC=C(C4=NC(N5CCOCC5)=NC(N5CCOCC5)=N4)C=C3)[Si](C)(C)C)C=C2)CC17393.5Standard polar33892256
Gedatolisib,2TMS,isomer #1CN(C)C1CCN(C(=O)C2=CC=C(N(C(=O)N(C3=CC=C(C4=NC(N5CCOCC5)=NC(N5CCOCC5)=N4)C=C3)[Si](C)(C)C)[Si](C)(C)C)C=C2)CC15676.6Semi standard non polar33892256
Gedatolisib,2TMS,isomer #1CN(C)C1CCN(C(=O)C2=CC=C(N(C(=O)N(C3=CC=C(C4=NC(N5CCOCC5)=NC(N5CCOCC5)=N4)C=C3)[Si](C)(C)C)[Si](C)(C)C)C=C2)CC14678.5Standard non polar33892256
Gedatolisib,2TMS,isomer #1CN(C)C1CCN(C(=O)C2=CC=C(N(C(=O)N(C3=CC=C(C4=NC(N5CCOCC5)=NC(N5CCOCC5)=N4)C=C3)[Si](C)(C)C)[Si](C)(C)C)C=C2)CC16916.3Standard polar33892256
Gedatolisib,1TBDMS,isomer #1CN(C)C1CCN(C(=O)C2=CC=C(N(C(=O)NC3=CC=C(C4=NC(N5CCOCC5)=NC(N5CCOCC5)=N4)C=C3)[Si](C)(C)C(C)(C)C)C=C2)CC16088.4Semi standard non polar33892256
Gedatolisib,1TBDMS,isomer #1CN(C)C1CCN(C(=O)C2=CC=C(N(C(=O)NC3=CC=C(C4=NC(N5CCOCC5)=NC(N5CCOCC5)=N4)C=C3)[Si](C)(C)C(C)(C)C)C=C2)CC14924.4Standard non polar33892256
Gedatolisib,1TBDMS,isomer #1CN(C)C1CCN(C(=O)C2=CC=C(N(C(=O)NC3=CC=C(C4=NC(N5CCOCC5)=NC(N5CCOCC5)=N4)C=C3)[Si](C)(C)C(C)(C)C)C=C2)CC17343.3Standard polar33892256
Gedatolisib,1TBDMS,isomer #2CN(C)C1CCN(C(=O)C2=CC=C(NC(=O)N(C3=CC=C(C4=NC(N5CCOCC5)=NC(N5CCOCC5)=N4)C=C3)[Si](C)(C)C(C)(C)C)C=C2)CC16079.8Semi standard non polar33892256
Gedatolisib,1TBDMS,isomer #2CN(C)C1CCN(C(=O)C2=CC=C(NC(=O)N(C3=CC=C(C4=NC(N5CCOCC5)=NC(N5CCOCC5)=N4)C=C3)[Si](C)(C)C(C)(C)C)C=C2)CC14945.2Standard non polar33892256
Gedatolisib,1TBDMS,isomer #2CN(C)C1CCN(C(=O)C2=CC=C(NC(=O)N(C3=CC=C(C4=NC(N5CCOCC5)=NC(N5CCOCC5)=N4)C=C3)[Si](C)(C)C(C)(C)C)C=C2)CC17362.0Standard polar33892256
Gedatolisib,2TBDMS,isomer #1CN(C)C1CCN(C(=O)C2=CC=C(N(C(=O)N(C3=CC=C(C4=NC(N5CCOCC5)=NC(N5CCOCC5)=N4)C=C3)[Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C)C=C2)CC16020.3Semi standard non polar33892256
Gedatolisib,2TBDMS,isomer #1CN(C)C1CCN(C(=O)C2=CC=C(N(C(=O)N(C3=CC=C(C4=NC(N5CCOCC5)=NC(N5CCOCC5)=N4)C=C3)[Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C)C=C2)CC14961.5Standard non polar33892256
Gedatolisib,2TBDMS,isomer #1CN(C)C1CCN(C(=O)C2=CC=C(N(C(=O)N(C3=CC=C(C4=NC(N5CCOCC5)=NC(N5CCOCC5)=N4)C=C3)[Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C)C=C2)CC16844.4Standard polar33892256
Spectra

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Gedatolisib 10V, Positive-QTOFsplash10-014i-0145129000-29cdc4a8455191db7ff22017-07-26Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Gedatolisib 20V, Positive-QTOFsplash10-00tg-0179301000-f566ca9e7ec75522358c2017-07-26Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Gedatolisib 40V, Positive-QTOFsplash10-00dl-3659110000-a335c9e6d60ddd1dbadc2017-07-26Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Gedatolisib 10V, Negative-QTOFsplash10-03dm-1077019000-f5cfcbf25098d46185832017-07-26Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Gedatolisib 20V, Negative-QTOFsplash10-0007-2297011000-68bf2b1b80879cfc7b9c2017-07-26Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Gedatolisib 40V, Negative-QTOFsplash10-002g-5692000000-ae1734e904aebe37a5322017-07-26Wishart LabView Spectrum
Biological Properties
Cellular LocationsNot Available
Biospecimen Locations
  • Blood
Tissue LocationsNot Available
Pathways
Normal Concentrations
BiospecimenStatusValueAgeSexConditionReferenceDetails
BloodDetected but not QuantifiedNot QuantifiedNot SpecifiedNot SpecifiedNormal details
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDDB11896
Phenol Explorer Compound IDNot Available
FooDB IDNot Available
KNApSAcK IDNot Available
Chemspider ID24644946
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkGedatolisib
METLIN IDNot Available
PubChem CompoundNot Available
PDB IDNot Available
ChEBI IDNot Available
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General References
  1. Barupal DK, Fiehn O: Generating the Blood Exposome Database Using a Comprehensive Text Mining and Database Fusion Approach. Environ Health Perspect. 2019 Sep;127(9):97008. doi: 10.1289/EHP4713. Epub 2019 Sep 26. [PubMed:31557052 ]