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Record Information
Version5.0
StatusDetected but not Quantified
Creation Date2021-09-11 17:39:21 UTC
Update Date2021-09-26 23:13:05 UTC
HMDB IDHMDB0257004
Secondary Accession NumbersNone
Metabolite Identification
Common Namepyrrolo[2,1-c][1,4]benzodiazepine
Descriptionpyrrolo[2,1-c][1,4]benzodiazepine, also known as PBDS CPD, belongs to the class of organic compounds known as 1,4-benzodiazepines. These are organic compounds containing a benzene ring fused to a 1,4-azepine. Based on a literature review a significant number of articles have been published on pyrrolo[2,1-c][1,4]benzodiazepine. This compound has been identified in human blood as reported by (PMID: 31557052 ). Pyrrolo[2,1-c][1,4]benzodiazepine is not a naturally occurring metabolite and is only found in those individuals exposed to this compound or its derivatives. Technically pyrrolo[2,1-c][1,4]benzodiazepine is part of the human exposome. The exposome can be defined as the collection of all the exposures of an individual in a lifetime and how those exposures relate to health. An individual's exposure begins before birth and includes insults from environmental and occupational sources.
Structure
Thumb
Synonyms
ValueSource
PBDS CPDHMDB
Pyrrolo(2,1-c)(1,4)benzodiazepineHMDB
PyrrolobenzodiazepineHMDB
Chemical FormulaC12H10N2
Average Molecular Weight182.226
Monoisotopic Molecular Weight182.08439833
IUPAC Name3,9-diazatricyclo[8.4.0.0^{3,7}]tetradeca-1,5,7,9,11,13-hexaene
Traditional Name3,9-diazatricyclo[8.4.0.0^{3,7}]tetradeca-1,5,7,9,11,13-hexaene
CAS Registry NumberNot Available
SMILES
C1C=CC2=CN=C3C=CC=CC3=CN12
InChI Identifier
InChI=1S/C12H10N2/c1-2-6-12-10(4-1)9-14-7-3-5-11(14)8-13-12/h1-6,8-9H,7H2
InChI KeyMSNVESLISHTIRS-UHFFFAOYSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as 1,4-benzodiazepines. These are organic compounds containing a benzene ring fused to a 1,4-azepine.
KingdomOrganic compounds
Super ClassOrganoheterocyclic compounds
ClassBenzodiazepines
Sub Class1,4-benzodiazepines
Direct Parent1,4-benzodiazepines
Alternative Parents
Substituents
  • 1,4-benzodiazepine
  • Para-diazepine
  • Benzenoid
  • Pyrroline
  • Tertiary aliphatic amine
  • Tertiary amine
  • Azacycle
  • Enamine
  • Organic nitrogen compound
  • Hydrocarbon derivative
  • Organonitrogen compound
  • Amine
  • Aromatic heteropolycyclic compound
Molecular FrameworkAromatic heteropolycyclic compounds
External DescriptorsNot Available
Ontology
Physiological effectNot Available
Disposition
ProcessNot Available
RoleNot Available
Physical Properties
StateNot Available
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
DeepCCS[M-2H]-174.94630932474
DeepCCS[M+Na]+150.46830932474

Predicted Kovats Retention Indices

Underivatized

MetaboliteSMILESKovats RI ValueColumn TypeReference
pyrrolo[2,1-c][1,4]benzodiazepineC1C=CC2=CN=C3C=CC=CC3=CN123222.1Standard polar33892256
pyrrolo[2,1-c][1,4]benzodiazepineC1C=CC2=CN=C3C=CC=CC3=CN122032.1Standard non polar33892256
pyrrolo[2,1-c][1,4]benzodiazepineC1C=CC2=CN=C3C=CC=CC3=CN122024.4Semi standard non polar33892256
Spectra

GC-MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted GC-MSPredicted GC-MS Spectrum - pyrrolo[2,1-c][1,4]benzodiazepine GC-MS (Non-derivatized) - 70eV, Positivesplash10-0pc0-3900000000-5ecf3b180580d243d6502021-09-23Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - pyrrolo[2,1-c][1,4]benzodiazepine GC-MS (Non-derivatized) - 70eV, PositiveNot Available2021-10-12Wishart LabView Spectrum
Biological Properties
Cellular LocationsNot Available
Biospecimen Locations
  • Blood
Tissue LocationsNot Available
Pathways
Normal Concentrations
BiospecimenStatusValueAgeSexConditionReferenceDetails
BloodDetected but not QuantifiedNot QuantifiedNot SpecifiedNot SpecifiedNormal details
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDNot Available
KNApSAcK IDNot Available
Chemspider ID24777255
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound66697609
PDB IDNot Available
ChEBI IDNot Available
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General References
  1. Barupal DK, Fiehn O: Generating the Blood Exposome Database Using a Comprehensive Text Mining and Database Fusion Approach. Environ Health Perspect. 2019 Sep;127(9):97008. doi: 10.1289/EHP4713. Epub 2019 Sep 26. [PubMed:31557052 ]