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Record Information

Version

5.0

Status

Detected but not Quantified

Creation Date

2021-09-11 18:33:19 UTC

Update Date

2021-09-26 23:13:59 UTC

HMDB ID

HMDB0257540

Secondary Accession Numbers

None

Metabolite Identification

Common Name

2-Methyl-8-(phenylmethoxy)imidazo[1,2-a]pyridine-3-acetonitrile

Description

2-Methyl-8-(phenylmethoxy)imidazo[1,2-a]pyridine-3-acetonitrile, also known as schering compound 28080, belongs to the class of organic compounds known as imidazopyridines. These are organic polycyclic compounds containing an imidazole ring fused to a pyridine ring. Imidazole is 5-membered ring consisting of three carbon atoms, and two nitrogen centers at the 1- and 3-positions. Pyridine is a 6-membered ring consisting of five carbon atoms and one nitrogen center. Based on a literature review a small amount of articles have been published on 2-Methyl-8-(phenylmethoxy)imidazo[1,2-a]pyridine-3-acetonitrile. This compound has been identified in human blood as reported by (PMID: 31557052 ). 2-methyl-8-(phenylmethoxy)imidazo[1,2-a]pyridine-3-acetonitrile is not a naturally occurring metabolite and is only found in those individuals exposed to this compound or its derivatives. Technically 2-Methyl-8-(phenylmethoxy)imidazo[1,2-a]pyridine-3-acetonitrile is part of the human exposome. The exposome can be defined as the collection of all the exposures of an individual in a lifetime and how those exposures relate to health. An individual's exposure begins before birth and includes insults from environmental and occupational sources.

Structure

MOL 3D MOL SDF 3D SDF PDB 3D PDB SMILES InChI

HMDB0257540
     RDKit          3D
2-Methyl-8-(phenylmethoxy)imidazo[1,2-a]pyridine-3-acetonitrile
 36 38  0  0  0  0  0  0  0  0999 V2000
   -2.8788    2.1063    2.4196 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4202    1.1193    1.3944 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1918    0.8521    0.9694 N   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2063   -0.1270    0.0149 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1973   -0.7348   -0.7138 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0919   -0.3504   -0.5103 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.2307   -0.8310   -1.1322 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4534   -0.1536   -0.6332 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.7141   -0.4569   -1.1038 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.8227    0.1997   -0.6095 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.6752    1.1656    0.3606 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.4261    1.4618    0.8226 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3056    0.8108    0.3355 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5402   -1.7103   -1.6211 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8759   -2.0270   -1.7522 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8576   -1.4034   -1.0118 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5073   -0.4411   -0.1184 N   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2803    0.2943    0.7031 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7730    0.2312    0.8401 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4083    1.3708    0.1711 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.9187    2.2848   -0.3633 N   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9841    1.5655    3.3835 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1562    2.9334    2.4631 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8739    2.5100    2.1662 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.1900   -0.6392   -2.2435 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3955   -1.9214   -1.0355 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.8366   -1.2216   -1.8726 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.7804   -0.0777   -1.0132 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.5350    1.6912    0.7602 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.2970    2.2247    1.5907 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3473    1.0997    0.7509 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2200   -2.2098   -2.2107 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1493   -2.8027   -2.4738 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9005   -1.6466   -1.1104 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1748   -0.7099    0.4622 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0269    0.2943    1.9213 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  2  0
  4  5  1  0
  5  6  1  0
  6  7  1  0
  7  8  1  0
  8  9  2  0
  9 10  1  0
 10 11  2  0
 11 12  1  0
 12 13  2  0
  5 14  2  0
 14 15  1  0
 15 16  2  0
 16 17  1  0
 17 18  1  0
 18 19  1  0
 19 20  1  0
 20 21  3  0
 18  2  2  0
 17  4  1  0
 13  8  1  0
  1 22  1  0
  1 23  1  0
  1 24  1  0
  7 25  1  0
  7 26  1  0
  9 27  1  0
 10 28  1  0
 11 29  1  0
 12 30  1  0
 13 31  1  0
 14 32  1  0
 15 33  1  0
 16 34  1  0
 19 35  1  0
 19 36  1  0
M  END

  Mrv1652309112120332D          

 21 23  0  0  0  0            999 V2000
   -0.1712   -0.6979    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6538   -0.6979    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1387   -0.0305    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9233   -0.2854    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    2.6378    0.1271    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3523   -0.2854    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3523   -1.1104    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6378   -1.5229    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9233   -1.1104    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1387   -1.3654    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    2.6378   -2.3479    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.3523   -2.7604    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3523   -3.5854    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0668   -3.9979    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0668   -4.8229    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3523   -5.2354    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6378   -4.8229    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6378   -3.9979    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8838    0.7541    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0768    0.9256    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7302    1.0972    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  2  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  2  0  0  0  0
  6  7  1  0  0  0  0
  7  8  2  0  0  0  0
  8  9  1  0  0  0  0
  4  9  1  0  0  0  0
  9 10  2  0  0  0  0
  2 10  1  0  0  0  0
  8 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  2  0  0  0  0
 14 15  1  0  0  0  0
 15 16  2  0  0  0  0
 16 17  1  0  0  0  0
 17 18  2  0  0  0  0
 13 18  1  0  0  0  0
  3 19  1  0  0  0  0
 19 20  1  0  0  0  0
 20 21  3  0  0  0  0
M  END
> <DATABASE_ID>
HMDB0257540

> <DATABASE_NAME>
hmdb

> <SMILES>
CC1=C(CC#N)N2C=CC=C(OCC3=CC=CC=C3)C2=N1

> <INCHI_IDENTIFIER>
InChI=1S/C17H15N3O/c1-13-15(9-10-18)20-11-5-8-16(17(20)19-13)21-12-14-6-3-2-4-7-14/h2-8,11H,9,12H2,1H3

> <INCHI_KEY>
PYKJFEPAUKAXNN-UHFFFAOYSA-N

> <FORMULA>
C17H15N3O

> <MOLECULAR_WEIGHT>
277.327

> <EXACT_MASS>
277.121512115

> <JCHEM_ACCEPTOR_COUNT>
3

> <JCHEM_ATOM_COUNT>
36

> <JCHEM_AVERAGE_POLARIZABILITY>
30.52692243465403

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
0

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
2-[8-(benzyloxy)-2-methylimidazo[1,2-a]pyridin-3-yl]acetonitrile

> <ALOGPS_LOGP>
3.54

> <JCHEM_LOGP>
2.073419724666666

> <ALOGPS_LOGS>
-4.16

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
3

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA_STRONGEST_ACIDIC>
13.060046602820155

> <JCHEM_PKA_STRONGEST_BASIC>
5.23118952528766

> <JCHEM_POLAR_SURFACE_AREA>
50.32

> <JCHEM_REFRACTIVITY>
81.76810000000002

> <JCHEM_ROTATABLE_BOND_COUNT>
4

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
1.90e-02 g/l

> <JCHEM_TRADITIONAL_IUPAC>
2-[8-(benzyloxy)-2-methylimidazo[1,2-a]pyridin-3-yl]acetonitrile

> <JCHEM_VEBER_RULE>
0

$$$$

HMDB0257540
     RDKit          3D
2-Methyl-8-(phenylmethoxy)imidazo[1,2-a]pyridine-3-acetonitrile
 36 38  0  0  0  0  0  0  0  0999 V2000
   -2.8788    2.1063    2.4196 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4202    1.1193    1.3944 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1918    0.8521    0.9694 N   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2063   -0.1270    0.0149 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1973   -0.7348   -0.7138 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0919   -0.3504   -0.5103 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.2307   -0.8310   -1.1322 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4534   -0.1536   -0.6332 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.7141   -0.4569   -1.1038 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.8227    0.1997   -0.6095 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.6752    1.1656    0.3606 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.4261    1.4618    0.8226 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3056    0.8108    0.3355 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5402   -1.7103   -1.6211 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8759   -2.0270   -1.7522 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8576   -1.4034   -1.0118 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5073   -0.4411   -0.1184 N   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2803    0.2943    0.7031 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7730    0.2312    0.8401 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4083    1.3708    0.1711 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.9187    2.2848   -0.3633 N   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9841    1.5655    3.3835 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1562    2.9334    2.4631 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8739    2.5100    2.1662 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.1900   -0.6392   -2.2435 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3955   -1.9214   -1.0355 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.8366   -1.2216   -1.8726 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.7804   -0.0777   -1.0132 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.5350    1.6912    0.7602 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.2970    2.2247    1.5907 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3473    1.0997    0.7509 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2200   -2.2098   -2.2107 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1493   -2.8027   -2.4738 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9005   -1.6466   -1.1104 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1748   -0.7099    0.4622 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0269    0.2943    1.9213 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  2  0
  4  5  1  0
  5  6  1  0
  6  7  1  0
  7  8  1  0
  8  9  2  0
  9 10  1  0
 10 11  2  0
 11 12  1  0
 12 13  2  0
  5 14  2  0
 14 15  1  0
 15 16  2  0
 16 17  1  0
 17 18  1  0
 18 19  1  0
 19 20  1  0
 20 21  3  0
 18  2  2  0
 17  4  1  0
 13  8  1  0
  1 22  1  0
  1 23  1  0
  1 24  1  0
  7 25  1  0
  7 26  1  0
  9 27  1  0
 10 28  1  0
 11 29  1  0
 12 30  1  0
 13 31  1  0
 14 32  1  0
 15 33  1  0
 16 34  1  0
 19 35  1  0
 19 36  1  0
M  END

HEADER    PROTEIN                                 11-SEP-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   11-SEP-21         0                                  
HETATM    1  C   UNK     0      -0.320  -1.303   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       1.220  -1.303   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       2.126  -0.057   0.000  0.00  0.00           C+0
HETATM    4  N   UNK     0       3.590  -0.533   0.000  0.00  0.00           N+0
HETATM    5  C   UNK     0       4.924   0.237   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       6.258  -0.533   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       6.258  -2.073   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       4.924  -2.843   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       3.590  -2.073   0.000  0.00  0.00           C+0
HETATM   10  N   UNK     0       2.126  -2.549   0.000  0.00  0.00           N+0
HETATM   11  O   UNK     0       4.924  -4.383   0.000  0.00  0.00           O+0
HETATM   12  C   UNK     0       6.258  -5.153   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       6.258  -6.693   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       7.591  -7.463   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       7.591  -9.003   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       6.258  -9.773   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       4.924  -9.003   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       4.924  -7.463   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0       1.650   1.408   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0       0.143   1.728   0.000  0.00  0.00           C+0
HETATM   21  N   UNK     0      -1.363   2.048   0.000  0.00  0.00           N+0
CONECT    1    2                                                            
CONECT    2    1    3   10                                                  
CONECT    3    2    4   19                                                  
CONECT    4    3    5    9                                                  
CONECT    5    4    6                                                       
CONECT    6    5    7                                                       
CONECT    7    6    8                                                       
CONECT    8    7    9   11                                                  
CONECT    9    8    4   10                                                  
CONECT   10    9    2                                                       
CONECT   11    8   12                                                       
CONECT   12   11   13                                                       
CONECT   13   12   14   18                                                  
CONECT   14   13   15                                                       
CONECT   15   14   16                                                       
CONECT   16   15   17                                                       
CONECT   17   16   18                                                       
CONECT   18   17   13                                                       
CONECT   19    3   20                                                       
CONECT   20   19   21                                                       
CONECT   21   20                                                            
MASTER        0    0    0    0    0    0    0    0   21    0   46    0
END

COMPND    HMDB0257540
HETATM    1  C1  UNL     1      -2.879   2.106   2.420  1.00  0.00           C  
HETATM    2  C2  UNL     1      -2.420   1.119   1.394  1.00  0.00           C  
HETATM    3  N1  UNL     1      -1.192   0.852   0.969  1.00  0.00           N  
HETATM    4  C3  UNL     1      -1.206  -0.127   0.015  1.00  0.00           C  
HETATM    5  C4  UNL     1      -0.197  -0.735  -0.714  1.00  0.00           C  
HETATM    6  O1  UNL     1       1.092  -0.350  -0.510  1.00  0.00           O  
HETATM    7  C5  UNL     1       2.231  -0.831  -1.132  1.00  0.00           C  
HETATM    8  C6  UNL     1       3.453  -0.154  -0.633  1.00  0.00           C  
HETATM    9  C7  UNL     1       4.714  -0.457  -1.104  1.00  0.00           C  
HETATM   10  C8  UNL     1       5.823   0.200  -0.610  1.00  0.00           C  
HETATM   11  C9  UNL     1       5.675   1.166   0.361  1.00  0.00           C  
HETATM   12  C10 UNL     1       4.426   1.462   0.823  1.00  0.00           C  
HETATM   13  C11 UNL     1       3.306   0.811   0.335  1.00  0.00           C  
HETATM   14  C12 UNL     1      -0.540  -1.710  -1.621  1.00  0.00           C  
HETATM   15  C13 UNL     1      -1.876  -2.027  -1.752  1.00  0.00           C  
HETATM   16  C14 UNL     1      -2.858  -1.403  -1.012  1.00  0.00           C  
HETATM   17  N2  UNL     1      -2.507  -0.441  -0.118  1.00  0.00           N  
HETATM   18  C15 UNL     1      -3.280   0.294   0.703  1.00  0.00           C  
HETATM   19  C16 UNL     1      -4.773   0.231   0.840  1.00  0.00           C  
HETATM   20  C17 UNL     1      -5.408   1.371   0.171  1.00  0.00           C  
HETATM   21  N3  UNL     1      -5.919   2.285  -0.363  1.00  0.00           N  
HETATM   22  H1  UNL     1      -2.984   1.566   3.383  1.00  0.00           H  
HETATM   23  H2  UNL     1      -2.156   2.933   2.463  1.00  0.00           H  
HETATM   24  H3  UNL     1      -3.874   2.510   2.166  1.00  0.00           H  
HETATM   25  H4  UNL     1       2.190  -0.639  -2.243  1.00  0.00           H  
HETATM   26  H5  UNL     1       2.395  -1.921  -1.036  1.00  0.00           H  
HETATM   27  H6  UNL     1       4.837  -1.222  -1.873  1.00  0.00           H  
HETATM   28  H7  UNL     1       6.780  -0.078  -1.013  1.00  0.00           H  
HETATM   29  H8  UNL     1       6.535   1.691   0.760  1.00  0.00           H  
HETATM   30  H9  UNL     1       4.297   2.225   1.591  1.00  0.00           H  
HETATM   31  H10 UNL     1       2.347   1.100   0.751  1.00  0.00           H  
HETATM   32  H11 UNL     1       0.220  -2.210  -2.211  1.00  0.00           H  
HETATM   33  H12 UNL     1      -2.149  -2.803  -2.474  1.00  0.00           H  
HETATM   34  H13 UNL     1      -3.901  -1.647  -1.110  1.00  0.00           H  
HETATM   35  H14 UNL     1      -5.175  -0.710   0.462  1.00  0.00           H  
HETATM   36  H15 UNL     1      -5.027   0.294   1.921  1.00  0.00           H  
CONECT    1    2   22   23   24
CONECT    2    3   18   18
CONECT    3    4    4
CONECT    4    5   17
CONECT    5    6   14   14
CONECT    6    7
CONECT    7    8   25   26
CONECT    8    9    9   13
CONECT    9   10   27
CONECT   10   11   11   28
CONECT   11   12   29
CONECT   12   13   13   30
CONECT   13   31
CONECT   14   15   32
CONECT   15   16   16   33
CONECT   16   17   34
CONECT   17   18
CONECT   18   19
CONECT   19   20   35   36
CONECT   20   21   21   21
END

HMDB0257540
     RDKit          3D
2-Methyl-8-(phenylmethoxy)imidazo[1,2-a]pyridine-3-acetonitrile
 36 38  0  0  0  0  0  0  0  0999 V2000
   -2.8788    2.1063    2.4196 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4202    1.1193    1.3944 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1918    0.8521    0.9694 N   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2063   -0.1270    0.0149 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1973   -0.7348   -0.7138 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0919   -0.3504   -0.5103 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.2307   -0.8310   -1.1322 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4534   -0.1536   -0.6332 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.7141   -0.4569   -1.1038 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.8227    0.1997   -0.6095 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.6752    1.1656    0.3606 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.4261    1.4618    0.8226 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3056    0.8108    0.3355 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5402   -1.7103   -1.6211 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8759   -2.0270   -1.7522 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8576   -1.4034   -1.0118 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5073   -0.4411   -0.1184 N   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2803    0.2943    0.7031 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7730    0.2312    0.8401 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4083    1.3708    0.1711 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.9187    2.2848   -0.3633 N   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9841    1.5655    3.3835 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1562    2.9334    2.4631 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8739    2.5100    2.1662 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.1900   -0.6392   -2.2435 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3955   -1.9214   -1.0355 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.8366   -1.2216   -1.8726 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.7804   -0.0777   -1.0132 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.5350    1.6912    0.7602 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.2970    2.2247    1.5907 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3473    1.0997    0.7509 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2200   -2.2098   -2.2107 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1493   -2.8027   -2.4738 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9005   -1.6466   -1.1104 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1748   -0.7099    0.4622 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0269    0.2943    1.9213 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  2  0
  4  5  1  0
  5  6  1  0
  6  7  1  0
  7  8  1  0
  8  9  2  0
  9 10  1  0
 10 11  2  0
 11 12  1  0
 12 13  2  0
  5 14  2  0
 14 15  1  0
 15 16  2  0
 16 17  1  0
 17 18  1  0
 18 19  1  0
 19 20  1  0
 20 21  3  0
 18  2  2  0
 17  4  1  0
 13  8  1  0
  1 22  1  0
  1 23  1  0
  1 24  1  0
  7 25  1  0
  7 26  1  0
  9 27  1  0
 10 28  1  0
 11 29  1  0
 12 30  1  0
 13 31  1  0
 14 32  1  0
 15 33  1  0
 16 34  1  0
 19 35  1  0
 19 36  1  0
M  END

View in JSmol View Stereo Labels

Synonyms

Value	Source
2-Methyl-8-(phenylmethoxy)imidazo-(1-2-a)pyrine-3-acetonitrile	HMDB
Schering compound 28080	HMDB

Chemical Formula

C₁₇H₁₅N₃O

Average Molecular Weight

277.327

Monoisotopic Molecular Weight

277.121512115

IUPAC Name

2-[8-(benzyloxy)-2-methylimidazo[1,2-a]pyridin-3-yl]acetonitrile

Traditional Name

2-[8-(benzyloxy)-2-methylimidazo[1,2-a]pyridin-3-yl]acetonitrile

CAS Registry Number

Not Available

SMILES

CC1=C(CC#N)N2C=CC=C(OCC3=CC=CC=C3)C2=N1

InChI Identifier

InChI=1S/C17H15N3O/c1-13-15(9-10-18)20-11-5-8-16(17(20)19-13)21-12-14-6-3-2-4-7-14/h2-8,11H,9,12H2,1H3

InChI Key

PYKJFEPAUKAXNN-UHFFFAOYSA-N

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as imidazopyridines. These are organic polycyclic compounds containing an imidazole ring fused to a pyridine ring. Imidazole is 5-membered ring consisting of three carbon atoms, and two nitrogen centers at the 1- and 3-positions. Pyridine is a 6-membered ring consisting of five carbon atoms and one nitrogen center.

Kingdom

Organic compounds

Super Class

Organoheterocyclic compounds

Class

Imidazopyridines

Sub Class

Not Available

Direct Parent

Imidazopyridines

Alternative Parents

Substituents

Imidazopyridine
Imidazo[1,2-a]pyridine
Alkyl aryl ether
Monocyclic benzene moiety
N-substituted imidazole
Pyridine
Benzenoid
Azole
Imidazole
Heteroaromatic compound
Nitrile
Carbonitrile
Ether
Azacycle
Organonitrogen compound
Hydrocarbon derivative
Organopnictogen compound
Organic oxygen compound
Organooxygen compound
Organic nitrogen compound
Aromatic heteropolycyclic compound

Molecular Framework

Aromatic heteropolycyclic compounds

External Descriptors

Not Available

Ontology

Physiological effect

Not Available

Disposition

Biological location

Non-excretory biofluid

Biofluid or Excreta

Blood (PMID: 31557052)

Source

Exogenous

Exogenous (PMID: 31557052)

Process

Not Available

Role

Not Available

Physical Properties

State

Not Available

Experimental Molecular Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Experimental Chromatographic Properties

Not Available

Predicted Molecular Properties

Property	Value	Source
logP	3.54	ALOGPS
logP	2.07	ChemAxon
logS	-4.2	ALOGPS
pKa (Strongest Acidic)	13.06	ChemAxon
pKa (Strongest Basic)	5.23	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	3	ChemAxon
Hydrogen Donor Count	0	ChemAxon
Polar Surface Area	50.32 Å²	ChemAxon
Rotatable Bond Count	4	ChemAxon
Refractivity	81.77 m³·mol⁻¹	ChemAxon
Polarizability	30.53 Å³	ChemAxon
Number of Rings	3	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

Predicted Chromatographic Properties

Predicted Collision Cross Sections

Predictor	Adduct Type	CCS Value (Å²)	Reference
DeepCCS	[M+H]+	165.714	30932474
DeepCCS	[M-H]-	163.356	30932474
DeepCCS	[M-2H]-	196.242	30932474
DeepCCS	[M+Na]+	171.807	30932474
AllCCS	[M+H]+	165.1	32859911
AllCCS	[M+H-H2O]+	161.6	32859911
AllCCS	[M+NH4]+	168.4	32859911
AllCCS	[M+Na]+	169.3	32859911
AllCCS	[M-H]-	170.5	32859911
AllCCS	[M+Na-2H]-	169.8	32859911
AllCCS	[M+HCOO]-	169.1	32859911

Predicted Kovats Retention Indices

Underivatized

Metabolite	SMILES	Kovats RI Value	Column Type	Reference
2-Methyl-8-(phenylmethoxy)imidazo[1,2-a]pyridine-3-acetonitrile	CC1=C(CC#N)N2C=CC=C(OCC3=CC=CC=C3)C2=N1	3316.4	Standard polar	33892256
2-Methyl-8-(phenylmethoxy)imidazo[1,2-a]pyridine-3-acetonitrile	CC1=C(CC#N)N2C=CC=C(OCC3=CC=CC=C3)C2=N1	2592.5	Standard non polar	33892256
2-Methyl-8-(phenylmethoxy)imidazo[1,2-a]pyridine-3-acetonitrile	CC1=C(CC#N)N2C=CC=C(OCC3=CC=CC=C3)C2=N1	2629.0	Semi standard non polar	33892256

Spectra

GC-MS Spectra

Spectrum Type	Description	Splash Key	Deposition Date	Source	View
Predicted GC-MS	Predicted GC-MS Spectrum - 2-Methyl-8-(phenylmethoxy)imidazo[1,2-a]pyridine-3-acetonitrile GC-MS (Non-derivatized) - 70eV, Positive	splash10-0006-9420000000-32053e33e3cd5a8e76f5	2021-09-23	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - 2-Methyl-8-(phenylmethoxy)imidazo[1,2-a]pyridine-3-acetonitrile GC-MS (Non-derivatized) - 70eV, Positive	Not Available	2021-10-12	Wishart Lab	View Spectrum

Biological Properties

Cellular Locations

Not Available

Biospecimen Locations

Blood

Tissue Locations

Not Available

Pathways

Not Available

Name	SMPDB/PathBank	KEGG

Normal Concentrations

Biospecimen	Status	Value	Age	Sex	Condition	Reference	Details
Blood	Detected but not Quantified	Not Quantified	Not Specified	Not Specified	Normal	31557052	details

Abnormal Concentrations

Not Available

Associated Disorders and Diseases

Disease References

None

Associated OMIM IDs

None

External Links

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FooDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

97227

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

108137

PDB ID

Not Available

ChEBI ID

Not Available

Food Biomarker Ontology

Not Available

VMH ID

Not Available

MarkerDB ID

Not Available

Good Scents ID

Not Available

References

Synthesis Reference

Not Available

Material Safety Data Sheet (MSDS)

Not Available

General References

Barupal DK, Fiehn O: Generating the Blood Exposome Database Using a Comprehensive Text Mining and Database Fusion Approach. Environ Health Perspect. 2019 Sep;127(9):97008. doi: 10.1289/EHP4713. Epub 2019 Sep 26. [PubMed:31557052 ]

Showing metabocard for 2-Methyl-8-(phenylmethoxy)imidazo[1,2-a]pyridine-3-acetonitrile (HMDB0257540)

MOL for HMDB0257540 (2-Methyl-8-(phenylmethoxy)imidazo[1,2-a]pyridine-3-acetonitrile)

3D MOL for HMDB0257540 (2-Methyl-8-(phenylmethoxy)imidazo[1,2-a]pyridine-3-acetonitrile)

3D SDF for HMDB0257540 (2-Methyl-8-(phenylmethoxy)imidazo[1,2-a]pyridine-3-acetonitrile)

3D-SDF for HMDB0257540 (2-Methyl-8-(phenylmethoxy)imidazo[1,2-a]pyridine-3-acetonitrile)

PDB for HMDB0257540 (2-Methyl-8-(phenylmethoxy)imidazo[1,2-a]pyridine-3-acetonitrile)

3D PDB for HMDB0257540 (2-Methyl-8-(phenylmethoxy)imidazo[1,2-a]pyridine-3-acetonitrile)

SMILES for HMDB0257540 (2-Methyl-8-(phenylmethoxy)imidazo[1,2-a]pyridine-3-acetonitrile)

INCHI for HMDB0257540 (2-Methyl-8-(phenylmethoxy)imidazo[1,2-a]pyridine-3-acetonitrile)

Structure for HMDB0257540 (2-Methyl-8-(phenylmethoxy)imidazo[1,2-a]pyridine-3-acetonitrile)

3D Structure for HMDB0257540 (2-Methyl-8-(phenylmethoxy)imidazo[1,2-a]pyridine-3-acetonitrile)

Predicted Collision Cross Sections

Predicted Kovats Retention Indices

Underivatized

GC-MS Spectra