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Record Information
Version5.0
StatusDetected but not Quantified
Creation Date2021-09-11 20:08:59 UTC
Update Date2021-09-26 23:15:29 UTC
HMDB IDHMDB0258526
Secondary Accession NumbersNone
Metabolite Identification
Common Name3-[(3-(2-Carboxyethyl)-4-methylpyrrol-2-YL)methylene]-2-indolinone
DescriptionSU5402, also known as SU 5402, belongs to the class of organic compounds known as indolines. Indolines are compounds containing an indole moiety, which consists of pyrrolidine ring fused to benzene to form 2,3-dihydroindole. Based on a literature review very few articles have been published on SU5402. This compound has been identified in human blood as reported by (PMID: 31557052 ). 3-[(3-(2-carboxyethyl)-4-methylpyrrol-2-yl)methylene]-2-indolinone is not a naturally occurring metabolite and is only found in those individuals exposed to this compound or its derivatives. Technically 3-[(3-(2-Carboxyethyl)-4-methylpyrrol-2-YL)methylene]-2-indolinone is part of the human exposome. The exposome can be defined as the collection of all the exposures of an individual in a lifetime and how those exposures relate to health. An individual's exposure begins before birth and includes insults from environmental and occupational sources.
Structure
Thumb
Synonyms
ValueSource
3-[3-(2-Carboxyethyl)-4-methylpyrrol-2-methylidenyl]-2-indolinoneChEBI
3-{[3-(2-carboxyethyl)-4-methylpyrrol-2-yl]methylene}-2-indolinoneChEBI
SU 5402ChEBI
Su-5402ChEBI
Chemical FormulaC17H16N2O3
Average Molecular Weight296.326
Monoisotopic Molecular Weight296.116092383
IUPAC Name3-{4-methyl-2-[(2-oxo-2,3-dihydro-1H-indol-3-ylidene)methyl]-1H-pyrrol-3-yl}propanoic acid
Traditional Name3-{4-methyl-2-[(2-oxo-1H-indol-3-ylidene)methyl]-1H-pyrrol-3-yl}propanoic acid
CAS Registry NumberNot Available
SMILES
CC1=CNC(C=C2C(=O)NC3=CC=CC=C23)=C1CCC(O)=O
InChI Identifier
InChI=1S/C17H16N2O3/c1-10-9-18-15(11(10)6-7-16(20)21)8-13-12-4-2-3-5-14(12)19-17(13)22/h2-5,8-9,18H,6-7H2,1H3,(H,19,22)(H,20,21)
InChI KeyJNDVEAXZWJIOKB-UHFFFAOYSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as indolines. Indolines are compounds containing an indole moiety, which consists of pyrrolidine ring fused to benzene to form 2,3-dihydroindole.
KingdomOrganic compounds
Super ClassOrganoheterocyclic compounds
ClassIndoles and derivatives
Sub ClassIndolines
Direct ParentIndolines
Alternative Parents
Substituents
  • Dihydroindole
  • Substituted pyrrole
  • Benzenoid
  • Pyrrole
  • Heteroaromatic compound
  • Secondary carboxylic acid amide
  • Lactam
  • Carboxamide group
  • Azacycle
  • Monocarboxylic acid or derivatives
  • Carboxylic acid
  • Carboxylic acid derivative
  • Carbonyl group
  • Organopnictogen compound
  • Organic oxygen compound
  • Organooxygen compound
  • Organonitrogen compound
  • Organic nitrogen compound
  • Hydrocarbon derivative
  • Organic oxide
  • Aromatic heteropolycyclic compound
Molecular FrameworkAromatic heteropolycyclic compounds
External Descriptors
Ontology
Physiological effectNot Available
Disposition
ProcessNot Available
RoleNot Available
Physical Properties
StateNot Available
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
logP2.09ALOGPS
logP2.86ChemAxon
logS-3.1ALOGPS
pKa (Strongest Acidic)4.15ChemAxon
pKa (Strongest Basic)-2.1ChemAxon
Physiological Charge-1ChemAxon
Hydrogen Acceptor Count3ChemAxon
Hydrogen Donor Count3ChemAxon
Polar Surface Area82.19 ŲChemAxon
Rotatable Bond Count4ChemAxon
Refractivity85.32 m³·mol⁻¹ChemAxon
Polarizability31.86 ųChemAxon
Number of Rings3ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterYesChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
DeepCCS[M-2H]-201.64130932474
DeepCCS[M+Na]+177.20630932474
AllCCS[M+H]+170.432859911
AllCCS[M+H-H2O]+166.832859911
AllCCS[M+NH4]+173.732859911
AllCCS[M+Na]+174.632859911
AllCCS[M-H]-173.832859911
AllCCS[M+Na-2H]-173.432859911
AllCCS[M+HCOO]-173.132859911

Predicted Kovats Retention Indices

Underivatized

MetaboliteSMILESKovats RI ValueColumn TypeReference
3-[(3-(2-Carboxyethyl)-4-methylpyrrol-2-YL)methylene]-2-indolinoneCC1=CNC(C=C2C(=O)NC3=CC=CC=C23)=C1CCC(O)=O4501.9Standard polar33892256
3-[(3-(2-Carboxyethyl)-4-methylpyrrol-2-YL)methylene]-2-indolinoneCC1=CNC(C=C2C(=O)NC3=CC=CC=C23)=C1CCC(O)=O2792.1Standard non polar33892256
3-[(3-(2-Carboxyethyl)-4-methylpyrrol-2-YL)methylene]-2-indolinoneCC1=CNC(C=C2C(=O)NC3=CC=CC=C23)=C1CCC(O)=O3241.2Semi standard non polar33892256

Derivatized

Derivative Name / StructureSMILESKovats RI ValueColumn TypeReference
3-[(3-(2-Carboxyethyl)-4-methylpyrrol-2-YL)methylene]-2-indolinone,2TMS,isomer #1CC1=CN([Si](C)(C)C)C(C=C2C(=O)NC3=CC=CC=C23)=C1CCC(=O)O[Si](C)(C)C3112.5Semi standard non polar33892256
3-[(3-(2-Carboxyethyl)-4-methylpyrrol-2-YL)methylene]-2-indolinone,2TMS,isomer #1CC1=CN([Si](C)(C)C)C(C=C2C(=O)NC3=CC=CC=C23)=C1CCC(=O)O[Si](C)(C)C2950.2Standard non polar33892256
3-[(3-(2-Carboxyethyl)-4-methylpyrrol-2-YL)methylene]-2-indolinone,2TMS,isomer #1CC1=CN([Si](C)(C)C)C(C=C2C(=O)NC3=CC=CC=C23)=C1CCC(=O)O[Si](C)(C)C3916.7Standard polar33892256
3-[(3-(2-Carboxyethyl)-4-methylpyrrol-2-YL)methylene]-2-indolinone,2TMS,isomer #2CC1=C[NH]C(C=C2C(=O)N([Si](C)(C)C)C3=CC=CC=C23)=C1CCC(=O)O[Si](C)(C)C2885.0Semi standard non polar33892256
3-[(3-(2-Carboxyethyl)-4-methylpyrrol-2-YL)methylene]-2-indolinone,2TMS,isomer #2CC1=C[NH]C(C=C2C(=O)N([Si](C)(C)C)C3=CC=CC=C23)=C1CCC(=O)O[Si](C)(C)C2718.3Standard non polar33892256
3-[(3-(2-Carboxyethyl)-4-methylpyrrol-2-YL)methylene]-2-indolinone,2TMS,isomer #2CC1=C[NH]C(C=C2C(=O)N([Si](C)(C)C)C3=CC=CC=C23)=C1CCC(=O)O[Si](C)(C)C3446.0Standard polar33892256
3-[(3-(2-Carboxyethyl)-4-methylpyrrol-2-YL)methylene]-2-indolinone,2TMS,isomer #3CC1=CN([Si](C)(C)C)C(C=C2C(=O)N([Si](C)(C)C)C3=CC=CC=C23)=C1CCC(=O)O3007.9Semi standard non polar33892256
3-[(3-(2-Carboxyethyl)-4-methylpyrrol-2-YL)methylene]-2-indolinone,2TMS,isomer #3CC1=CN([Si](C)(C)C)C(C=C2C(=O)N([Si](C)(C)C)C3=CC=CC=C23)=C1CCC(=O)O2813.7Standard non polar33892256
3-[(3-(2-Carboxyethyl)-4-methylpyrrol-2-YL)methylene]-2-indolinone,2TMS,isomer #3CC1=CN([Si](C)(C)C)C(C=C2C(=O)N([Si](C)(C)C)C3=CC=CC=C23)=C1CCC(=O)O3530.9Standard polar33892256
3-[(3-(2-Carboxyethyl)-4-methylpyrrol-2-YL)methylene]-2-indolinone,3TMS,isomer #1CC1=CN([Si](C)(C)C)C(C=C2C(=O)N([Si](C)(C)C)C3=CC=CC=C23)=C1CCC(=O)O[Si](C)(C)C2984.9Semi standard non polar33892256
3-[(3-(2-Carboxyethyl)-4-methylpyrrol-2-YL)methylene]-2-indolinone,3TMS,isomer #1CC1=CN([Si](C)(C)C)C(C=C2C(=O)N([Si](C)(C)C)C3=CC=CC=C23)=C1CCC(=O)O[Si](C)(C)C2853.7Standard non polar33892256
3-[(3-(2-Carboxyethyl)-4-methylpyrrol-2-YL)methylene]-2-indolinone,3TMS,isomer #1CC1=CN([Si](C)(C)C)C(C=C2C(=O)N([Si](C)(C)C)C3=CC=CC=C23)=C1CCC(=O)O[Si](C)(C)C3287.1Standard polar33892256
3-[(3-(2-Carboxyethyl)-4-methylpyrrol-2-YL)methylene]-2-indolinone,2TBDMS,isomer #1CC1=CN([Si](C)(C)C(C)(C)C)C(C=C2C(=O)NC3=CC=CC=C23)=C1CCC(=O)O[Si](C)(C)C(C)(C)C3538.3Semi standard non polar33892256
3-[(3-(2-Carboxyethyl)-4-methylpyrrol-2-YL)methylene]-2-indolinone,2TBDMS,isomer #1CC1=CN([Si](C)(C)C(C)(C)C)C(C=C2C(=O)NC3=CC=CC=C23)=C1CCC(=O)O[Si](C)(C)C(C)(C)C3327.9Standard non polar33892256
3-[(3-(2-Carboxyethyl)-4-methylpyrrol-2-YL)methylene]-2-indolinone,2TBDMS,isomer #1CC1=CN([Si](C)(C)C(C)(C)C)C(C=C2C(=O)NC3=CC=CC=C23)=C1CCC(=O)O[Si](C)(C)C(C)(C)C3981.5Standard polar33892256
3-[(3-(2-Carboxyethyl)-4-methylpyrrol-2-YL)methylene]-2-indolinone,2TBDMS,isomer #2CC1=C[NH]C(C=C2C(=O)N([Si](C)(C)C(C)(C)C)C3=CC=CC=C23)=C1CCC(=O)O[Si](C)(C)C(C)(C)C3352.9Semi standard non polar33892256
3-[(3-(2-Carboxyethyl)-4-methylpyrrol-2-YL)methylene]-2-indolinone,2TBDMS,isomer #2CC1=C[NH]C(C=C2C(=O)N([Si](C)(C)C(C)(C)C)C3=CC=CC=C23)=C1CCC(=O)O[Si](C)(C)C(C)(C)C3107.6Standard non polar33892256
3-[(3-(2-Carboxyethyl)-4-methylpyrrol-2-YL)methylene]-2-indolinone,2TBDMS,isomer #2CC1=C[NH]C(C=C2C(=O)N([Si](C)(C)C(C)(C)C)C3=CC=CC=C23)=C1CCC(=O)O[Si](C)(C)C(C)(C)C3543.3Standard polar33892256
3-[(3-(2-Carboxyethyl)-4-methylpyrrol-2-YL)methylene]-2-indolinone,2TBDMS,isomer #3CC1=CN([Si](C)(C)C(C)(C)C)C(C=C2C(=O)N([Si](C)(C)C(C)(C)C)C3=CC=CC=C23)=C1CCC(=O)O3460.8Semi standard non polar33892256
3-[(3-(2-Carboxyethyl)-4-methylpyrrol-2-YL)methylene]-2-indolinone,2TBDMS,isomer #3CC1=CN([Si](C)(C)C(C)(C)C)C(C=C2C(=O)N([Si](C)(C)C(C)(C)C)C3=CC=CC=C23)=C1CCC(=O)O3202.1Standard non polar33892256
3-[(3-(2-Carboxyethyl)-4-methylpyrrol-2-YL)methylene]-2-indolinone,2TBDMS,isomer #3CC1=CN([Si](C)(C)C(C)(C)C)C(C=C2C(=O)N([Si](C)(C)C(C)(C)C)C3=CC=CC=C23)=C1CCC(=O)O3618.7Standard polar33892256
3-[(3-(2-Carboxyethyl)-4-methylpyrrol-2-YL)methylene]-2-indolinone,3TBDMS,isomer #1CC1=CN([Si](C)(C)C(C)(C)C)C(C=C2C(=O)N([Si](C)(C)C(C)(C)C)C3=CC=CC=C23)=C1CCC(=O)O[Si](C)(C)C(C)(C)C3608.2Semi standard non polar33892256
3-[(3-(2-Carboxyethyl)-4-methylpyrrol-2-YL)methylene]-2-indolinone,3TBDMS,isomer #1CC1=CN([Si](C)(C)C(C)(C)C)C(C=C2C(=O)N([Si](C)(C)C(C)(C)C)C3=CC=CC=C23)=C1CCC(=O)O[Si](C)(C)C(C)(C)C3394.0Standard non polar33892256
3-[(3-(2-Carboxyethyl)-4-methylpyrrol-2-YL)methylene]-2-indolinone,3TBDMS,isomer #1CC1=CN([Si](C)(C)C(C)(C)C)C(C=C2C(=O)N([Si](C)(C)C(C)(C)C)C3=CC=CC=C23)=C1CCC(=O)O[Si](C)(C)C(C)(C)C3479.8Standard polar33892256
Spectra

GC-MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted GC-MSPredicted GC-MS Spectrum - 3-[(3-(2-Carboxyethyl)-4-methylpyrrol-2-YL)methylene]-2-indolinone GC-MS (Non-derivatized) - 70eV, Positivesplash10-102i-0090000000-e0946753470b4fab11802021-09-23Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - 3-[(3-(2-Carboxyethyl)-4-methylpyrrol-2-YL)methylene]-2-indolinone GC-MS (Non-derivatized) - 70eV, PositiveNot Available2021-10-12Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - 3-[(3-(2-Carboxyethyl)-4-methylpyrrol-2-YL)methylene]-2-indolinone GC-MS (TMS_1_1) - 70eV, PositiveNot Available2021-11-05Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - 3-[(3-(2-Carboxyethyl)-4-methylpyrrol-2-YL)methylene]-2-indolinone GC-MS (TMS_1_2) - 70eV, PositiveNot Available2021-11-05Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - 3-[(3-(2-Carboxyethyl)-4-methylpyrrol-2-YL)methylene]-2-indolinone GC-MS (TMS_1_3) - 70eV, PositiveNot Available2021-11-05Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - 3-[(3-(2-Carboxyethyl)-4-methylpyrrol-2-YL)methylene]-2-indolinone GC-MS (TBDMS_1_1) - 70eV, PositiveNot Available2021-11-05Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - 3-[(3-(2-Carboxyethyl)-4-methylpyrrol-2-YL)methylene]-2-indolinone GC-MS (TBDMS_1_2) - 70eV, PositiveNot Available2021-11-05Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - 3-[(3-(2-Carboxyethyl)-4-methylpyrrol-2-YL)methylene]-2-indolinone GC-MS (TBDMS_1_3) - 70eV, PositiveNot Available2021-11-05Wishart LabView Spectrum
Biological Properties
Cellular LocationsNot Available
Biospecimen Locations
  • Blood
Tissue LocationsNot Available
Pathways
Normal Concentrations
BiospecimenStatusValueAgeSexConditionReferenceDetails
BloodDetected but not QuantifiedNot QuantifiedNot SpecifiedNot SpecifiedNormal details
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDNot Available
KNApSAcK IDNot Available
Chemspider ID5116
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound5307
PDB IDNot Available
ChEBI ID63449
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General References
  1. Barupal DK, Fiehn O: Generating the Blood Exposome Database Using a Comprehensive Text Mining and Database Fusion Approach. Environ Health Perspect. 2019 Sep;127(9):97008. doi: 10.1289/EHP4713. Epub 2019 Sep 26. [PubMed:31557052 ]