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Record Information
Version5.0
StatusDetected but not Quantified
Creation Date2021-09-11 22:44:57 UTC
Update Date2021-09-26 23:17:37 UTC
HMDB IDHMDB0259818
Secondary Accession NumbersNone
Metabolite Identification
Common NameVinleucinol
DescriptionN-(1-ethoxy-3-methyl-1-oxopentan-2-yl)-12-ethyl-4-[17-ethyl-17-hydroxy-13-(methoxycarbonyl)-1,11-diazatetracyclo[13.3.1.0⁴,¹².0⁵,¹⁰]nonadeca-4(12),5,7,9-tetraen-13-yl]-10,11-dihydroxy-5-methoxy-8-methyl-8,16-diazapentacyclo[10.6.1.0¹,⁹.0²,⁷.0¹⁶,¹⁹]nonadeca-2,4,6,13-tetraene-10-carboximidic acid belongs to the class of organic compounds known as vinca alkaloids. These are alkaloids with a dimeric chemical structure composed of an indole nucleus (catharanthine), and a dihydroindole nucleus (vindoline), joined together. Based on a literature review very few articles have been published on N-(1-ethoxy-3-methyl-1-oxopentan-2-yl)-12-ethyl-4-[17-ethyl-17-hydroxy-13-(methoxycarbonyl)-1,11-diazatetracyclo[13.3.1.0⁴,¹².0⁵,¹⁰]nonadeca-4(12),5,7,9-tetraen-13-yl]-10,11-dihydroxy-5-methoxy-8-methyl-8,16-diazapentacyclo[10.6.1.0¹,⁹.0²,⁷.0¹⁶,¹⁹]nonadeca-2,4,6,13-tetraene-10-carboximidic acid. This compound has been identified in human blood as reported by (PMID: 31557052 ). Vinleucinol is not a naturally occurring metabolite and is only found in those individuals exposed to this compound or its derivatives. Technically Vinleucinol is part of the human exposome. The exposome can be defined as the collection of all the exposures of an individual in a lifetime and how those exposures relate to health. An individual's exposure begins before birth and includes insults from environmental and occupational sources.
Structure
Thumb
Synonyms
ValueSource
N-(1-Ethoxy-3-methyl-1-oxopentan-2-yl)-12-ethyl-4-[17-ethyl-17-hydroxy-13-(methoxycarbonyl)-1,11-diazatetracyclo[13.3.1.0,.0,]nonadeca-4(12),5,7,9-tetraen-13-yl]-10,11-dihydroxy-5-methoxy-8-methyl-8,16-diazapentacyclo[10.6.1.0,.0,.0,]nonadeca-2,4,6,13-tetraene-10-carboximidateGenerator
Chemical FormulaC51H69N5O9
Average Molecular Weight896.139
Monoisotopic Molecular Weight895.509528822
IUPAC Namemethyl 13-{10-[(1-ethoxy-3-methyl-1-oxopentan-2-yl)carbamoyl]-12-ethyl-10,11-dihydroxy-5-methoxy-8-methyl-8,16-diazapentacyclo[10.6.1.0^{1,9}.0^{2,7}.0^{16,19}]nonadeca-2,4,6,13-tetraen-4-yl}-17-ethyl-17-hydroxy-1,11-diazatetracyclo[13.3.1.0^{4,12}.0^{5,10}]nonadeca-4(12),5,7,9-tetraene-13-carboxylate
Traditional Namemethyl 13-{10-[(1-ethoxy-3-methyl-1-oxopentan-2-yl)carbamoyl]-12-ethyl-10,11-dihydroxy-5-methoxy-8-methyl-8,16-diazapentacyclo[10.6.1.0^{1,9}.0^{2,7}.0^{16,19}]nonadeca-2,4,6,13-tetraen-4-yl}-17-ethyl-17-hydroxy-1,11-diazatetracyclo[13.3.1.0^{4,12}.0^{5,10}]nonadeca-4(12),5,7,9-tetraene-13-carboxylate
CAS Registry NumberNot Available
SMILES
CCOC(=O)C(NC(=O)C1(O)C2N(C)C3=CC(OC)=C(C=C3C22CCN3CC=CC(CC)(C23)C1O)C1(CC2CN(CC(O)(CC)C2)CCC2=C1NC1=CC=CC=C21)C(=O)OC)C(C)CC
InChI Identifier
InChI=1S/C51H69N5O9/c1-9-30(5)39(41(57)65-12-4)53-45(59)51(62)43-49(20-23-56-21-15-19-48(11-3,42(49)56)44(51)58)34-24-35(38(63-7)25-37(34)54(43)6)50(46(60)64-8)27-31-26-47(61,10-2)29-55(28-31)22-18-33-32-16-13-14-17-36(32)52-40(33)50/h13-17,19,24-25,30-31,39,42-44,52,58,61-62H,9-12,18,20-23,26-29H2,1-8H3,(H,53,59)
InChI KeyQSTPFUDHVVIGCL-UHFFFAOYSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as vinca alkaloids. These are alkaloids with a dimeric chemical structure composed of an indole nucleus (catharanthine), and a dihydroindole nucleus (vindoline), joined together.
KingdomOrganic compounds
Super ClassAlkaloids and derivatives
ClassVinca alkaloids
Sub ClassNot Available
Direct ParentVinca alkaloids
Alternative Parents
Substituents
  • Vinca alkaloid skeleton
  • Hybrid peptide
  • Isoleucine or derivatives
  • Quinoline-6-carboxamide
  • N-acyl-alpha amino acid or derivatives
  • Alpha-amino acid ester
  • Carbazole
  • 3-alkylindole
  • Alpha-amino acid or derivatives
  • Indole
  • Indole or derivatives
  • Dialkylarylamine
  • Tertiary aliphatic/aromatic amine
  • Anisole
  • Fatty acid ester
  • Aralkylamine
  • Alkyl aryl ether
  • Fatty acyl
  • Benzenoid
  • N-alkylpyrrolidine
  • Dicarboxylic acid or derivatives
  • Piperidine
  • Cyclic alcohol
  • Heteroaromatic compound
  • Methyl ester
  • Tertiary alcohol
  • Pyrrole
  • Pyrrolidine
  • Secondary alcohol
  • Tertiary amine
  • Tertiary aliphatic amine
  • Secondary carboxylic acid amide
  • Amino acid or derivatives
  • Carboxamide group
  • Carboxylic acid ester
  • 1,2-aminoalcohol
  • Organoheterocyclic compound
  • Azacycle
  • Carboxylic acid derivative
  • Ether
  • Carbonyl group
  • Hydrocarbon derivative
  • Organic oxide
  • Organonitrogen compound
  • Organooxygen compound
  • Organic oxygen compound
  • Organic nitrogen compound
  • Amine
  • Organopnictogen compound
  • Alcohol
  • Aromatic heteropolycyclic compound
Molecular FrameworkAromatic heteropolycyclic compounds
External DescriptorsNot Available
Ontology
Not AvailableNot Available
Physical Properties
StateNot Available
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
logP4.39ALOGPS
logP4.89ChemAxon
logS-4.6ALOGPS
pKa (Strongest Acidic)11.23ChemAxon
pKa (Strongest Basic)8.68ChemAxon
Physiological Charge2ChemAxon
Hydrogen Acceptor Count10ChemAxon
Hydrogen Donor Count5ChemAxon
Polar Surface Area177.13 ŲChemAxon
Rotatable Bond Count13ChemAxon
Refractivity248.91 m³·mol⁻¹ChemAxon
Polarizability99.03 ųChemAxon
Number of Rings9ChemAxon
BioavailabilityNoChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleYesChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
AllCCS[M+H]+297.42432859911
AllCCS[M+H-H2O]+297.09232859911
AllCCS[M+Na]+297.78832859911
AllCCS[M+NH4]+297.7132859911
AllCCS[M-H]-230.67732859911
AllCCS[M+Na-2H]-236.7732859911
AllCCS[M+HCOO]-243.47132859911
DeepCCS[M-2H]-322.47930932474
DeepCCS[M+Na]+296.61130932474

Predicted Kovats Retention Indices

Underivatized

MetaboliteSMILESKovats RI ValueColumn TypeReference
VinleucinolCCOC(=O)C(NC(=O)C1(O)C2N(C)C3=CC(OC)=C(C=C3C22CCN3CC=CC(CC)(C23)C1O)C1(CC2CN(CC(O)(CC)C2)CCC2=C1NC1=CC=CC=C21)C(=O)OC)C(C)CC5393.4Standard polar33892256
VinleucinolCCOC(=O)C(NC(=O)C1(O)C2N(C)C3=CC(OC)=C(C=C3C22CCN3CC=CC(CC)(C23)C1O)C1(CC2CN(CC(O)(CC)C2)CCC2=C1NC1=CC=CC=C21)C(=O)OC)C(C)CC5247.8Standard non polar33892256
VinleucinolCCOC(=O)C(NC(=O)C1(O)C2N(C)C3=CC(OC)=C(C=C3C22CCN3CC=CC(CC)(C23)C1O)C1(CC2CN(CC(O)(CC)C2)CCC2=C1NC1=CC=CC=C21)C(=O)OC)C(C)CC6202.5Semi standard non polar33892256
Spectra
Biological Properties
Cellular LocationsNot Available
Biospecimen Locations
  • Blood
Tissue LocationsNot Available
Pathways
Normal Concentrations
BiospecimenStatusValueAgeSexConditionReferenceDetails
BloodDetected but not QuantifiedNot QuantifiedNot SpecifiedNot SpecifiedNormal details
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDNot Available
KNApSAcK IDNot Available
Chemspider ID384815
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound435129
PDB IDNot Available
ChEBI IDNot Available
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General References
  1. Barupal DK, Fiehn O: Generating the Blood Exposome Database Using a Comprehensive Text Mining and Database Fusion Approach. Environ Health Perspect. 2019 Sep;127(9):97008. doi: 10.1289/EHP4713. Epub 2019 Sep 26. [PubMed:31557052 ]