Hmdb loader
Record Information
Version5.0
StatusDetected but not Quantified
Creation Date2021-09-11 22:50:25 UTC
Update Date2021-09-26 23:17:43 UTC
HMDB IDHMDB0259885
Secondary Accession NumbersNone
Metabolite Identification
Common NameOxamyl
Descriptionoxamyl belongs to the class of organic compounds known as tertiary carboxylic acid amides. Tertiary carboxylic acid amides are compounds containing an amide derivative of carboxylic acid, with the general structure RN(R1)C(R2)=O (R1-R2 any atom but H). Based on a literature review a significant number of articles have been published on oxamyl. This compound has been identified in human blood as reported by (PMID: 31557052 ). Oxamyl is not a naturally occurring metabolite and is only found in those individuals exposed to this compound or its derivatives. Technically Oxamyl is part of the human exposome. The exposome can be defined as the collection of all the exposures of an individual in a lifetime and how those exposures relate to health. An individual's exposure begins before birth and includes insults from environmental and occupational sources.
Structure
Thumb
Synonyms
ValueSource
2-(Dimethylamino)-N-(((methylamino)carbonyl)oxy)-2-oxoethanimidothioic acid methyl esterChEBI
2-Dimethylamino-1-(methylthio)glyoxal O-methylcarbamoylmonoximeChEBI
DioxamylChEBI
N',n'-dimethyl-N-((methylcarbamoyl)oxy)-1-methylthio-oxamimidic acidChEBI
N,N-Dimethyl-alpha-methylcarbamoyloxyimino-alpha-(methylthio)acetamideChEBI
S-Methyl 1-(dimethylcarbamoyl)-N-((methylcarbamoyl)oxy)thioformimidateChEBI
S-Methyl n',n'-dimethyl-N-(methylcarbamoyloxy)-1-thio-oxamimidateChEBI
2-(Dimethylamino)-N-(((methylamino)carbonyl)oxy)-2-oxoethanimidothioate methyl esterGenerator
N',n'-dimethyl-N-((methylcarbamoyl)oxy)-1-methylthio-oxamimidateGenerator
N,N-Dimethyl-a-methylcarbamoyloxyimino-a-(methylthio)acetamideGenerator
N,N-Dimethyl-α-methylcarbamoyloxyimino-α-(methylthio)acetamideGenerator
S-Methyl 1-(dimethylcarbamoyl)-N-((methylcarbamoyl)oxy)thioformimidic acidGenerator
S-Methyl n',n'-dimethyl-N-(methylcarbamoyloxy)-1-thio-oxamimidic acidGenerator
N',n'-dimethyl-N-((methylcarbamoyl)oxy)-1- thiooxamimidateMeSH
Oxamyl 1211MeSH
Oxamyl 4509MeSH
Chemical FormulaC7H13N3O3S
Average Molecular Weight219.26
Monoisotopic Molecular Weight219.067762465
IUPAC Name[(dimethylcarbamoyl)(methylsulfanyl)methylidene]amino N-methylcarbamate
Traditional Nameoxamyl
CAS Registry NumberNot Available
SMILES
CNC(=O)ON=C(SC)C(=O)N(C)C
InChI Identifier
InChI=1S/C7H13N3O3S/c1-8-7(12)13-9-5(14-4)6(11)10(2)3/h1-4H3,(H,8,12)
InChI KeyKZAUOCCYDRDERY-UHFFFAOYSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as tertiary carboxylic acid amides. Tertiary carboxylic acid amides are compounds containing an amide derivative of carboxylic acid, with the general structure RN(R1)C(R2)=O (R1-R2 any atom but H).
KingdomOrganic compounds
Super ClassOrganic acids and derivatives
ClassCarboxylic acids and derivatives
Sub ClassCarboxylic acid derivatives
Direct ParentTertiary carboxylic acid amides
Alternative Parents
Substituents
  • Tertiary carboxylic acid amide
  • Carboximidic acid derivative
  • Sulfenyl compound
  • Propargyl-type 1,3-dipolar organic compound
  • Organic 1,3-dipolar compound
  • Carbonyl group
  • Hydrocarbon derivative
  • Organic oxide
  • Organopnictogen compound
  • Organic oxygen compound
  • Organosulfur compound
  • Organooxygen compound
  • Organonitrogen compound
  • Imine
  • Organic nitrogen compound
  • Aliphatic acyclic compound
Molecular FrameworkAliphatic acyclic compounds
External Descriptors
Ontology
Physiological effectNot Available
Disposition
ProcessNot Available
Role
Physical Properties
StateNot Available
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
logP-0.16ALOGPS
logP0.32ChemAxon
logS-1.6ALOGPS
pKa (Strongest Acidic)13.86ChemAxon
pKa (Strongest Basic)-1.7ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count4ChemAxon
Hydrogen Donor Count1ChemAxon
Polar Surface Area71 ŲChemAxon
Rotatable Bond Count4ChemAxon
Refractivity53.67 m³·mol⁻¹ChemAxon
Polarizability21.67 ųChemAxon
Number of Rings0ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterYesChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
AllCCS[M+H]+147.12832859911
AllCCS[M+H-H2O]+143.83432859911
AllCCS[M+Na]+151.06232859911
AllCCS[M+NH4]+150.18332859911
AllCCS[M-H]-147.2932859911
AllCCS[M+Na-2H]-148.68132859911
AllCCS[M+HCOO]-150.28132859911
DeepCCS[M+H]+143.77630932474
DeepCCS[M-H]-141.3830932474
DeepCCS[M-2H]-176.1330932474
DeepCCS[M+Na]+150.6730932474

Predicted Kovats Retention Indices

Underivatized

MetaboliteSMILESKovats RI ValueColumn TypeReference
OxamylCNC(=O)ON=C(SC)C(=O)N(C)C2305.9Standard polar33892256
OxamylCNC(=O)ON=C(SC)C(=O)N(C)C1579.6Standard non polar33892256
OxamylCNC(=O)ON=C(SC)C(=O)N(C)C1802.8Semi standard non polar33892256

Derivatized

Derivative Name / StructureSMILESKovats RI ValueColumn TypeReference
Oxamyl,1TMS,isomer #1CSC(=NOC(=O)N(C)[Si](C)(C)C)C(=O)N(C)C1878.8Semi standard non polar33892256
Oxamyl,1TMS,isomer #1CSC(=NOC(=O)N(C)[Si](C)(C)C)C(=O)N(C)C1647.5Standard non polar33892256
Oxamyl,1TMS,isomer #1CSC(=NOC(=O)N(C)[Si](C)(C)C)C(=O)N(C)C2931.4Standard polar33892256
Oxamyl,1TBDMS,isomer #1CSC(=NOC(=O)N(C)[Si](C)(C)C(C)(C)C)C(=O)N(C)C2078.2Semi standard non polar33892256
Oxamyl,1TBDMS,isomer #1CSC(=NOC(=O)N(C)[Si](C)(C)C(C)(C)C)C(=O)N(C)C1817.5Standard non polar33892256
Oxamyl,1TBDMS,isomer #1CSC(=NOC(=O)N(C)[Si](C)(C)C(C)(C)C)C(=O)N(C)C2965.9Standard polar33892256
Spectra

GC-MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted GC-MSPredicted GC-MS Spectrum - Oxamyl GC-MS (Non-derivatized) - 70eV, PositiveNot Available2020-08-04Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Oxamyl GC-MS (Non-derivatized) - 70eV, PositiveNot Available2021-10-12Wishart LabView Spectrum

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Experimental LC-MS/MSLC-MS/MS Spectrum - Oxamyl NA , positive-QTOFsplash10-00di-9810000000-e8856cc7d6139e969bd42020-08-04HMDB team, MONAView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Oxamyl 10V, Positive-QTOFNot Available2020-08-04Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Oxamyl 20V, Positive-QTOFNot Available2020-08-04Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Oxamyl 40V, Positive-QTOFNot Available2020-08-04Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Oxamyl 10V, Negative-QTOFNot Available2020-08-04Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Oxamyl 20V, Negative-QTOFNot Available2020-08-04Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Oxamyl 40V, Negative-QTOFNot Available2020-08-04Wishart LabView Spectrum

NMR Spectra

Spectrum TypeDescriptionDeposition DateSourceView
Predicted 1D NMR13C NMR Spectrum (1D, 100 MHz, D2O, predicted)2021-10-27Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 100 MHz, D2O, predicted)2021-10-27Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 1000 MHz, D2O, predicted)2021-10-27Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 1000 MHz, D2O, predicted)2021-10-27Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 200 MHz, D2O, predicted)2021-10-27Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 200 MHz, D2O, predicted)2021-10-27Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 300 MHz, D2O, predicted)2021-10-27Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 300 MHz, D2O, predicted)2021-10-27Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 400 MHz, D2O, predicted)2021-10-27Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 400 MHz, D2O, predicted)2021-10-27Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 500 MHz, D2O, predicted)2021-10-27Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 500 MHz, D2O, predicted)2021-10-27Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 600 MHz, D2O, predicted)2021-10-27Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 600 MHz, D2O, predicted)2021-10-27Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 700 MHz, D2O, predicted)2021-10-27Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 700 MHz, D2O, predicted)2021-10-27Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 800 MHz, D2O, predicted)2021-10-27Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 800 MHz, D2O, predicted)2021-10-27Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 900 MHz, D2O, predicted)2021-10-27Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 900 MHz, D2O, predicted)2021-10-27Wishart LabView Spectrum
Biological Properties
Cellular LocationsNot Available
Biospecimen Locations
  • Blood
Tissue LocationsNot Available
Pathways
Normal Concentrations
BiospecimenStatusValueAgeSexConditionReferenceDetails
BloodDetected but not QuantifiedNot QuantifiedNot SpecifiedNot SpecifiedNormal details
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDNot Available
KNApSAcK IDNot Available
Chemspider ID29356
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkOxamyl
METLIN IDNot Available
PubChem Compound31657
PDB IDNot Available
ChEBI ID38539
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General References
  1. Barupal DK, Fiehn O: Generating the Blood Exposome Database Using a Comprehensive Text Mining and Database Fusion Approach. Environ Health Perspect. 2019 Sep;127(9):97008. doi: 10.1289/EHP4713. Epub 2019 Sep 26. [PubMed:31557052 ]