Hmdb loader
Record Information
Version5.0
StatusExpected but not Quantified
Creation Date2021-09-22 21:01:04 UTC
Update Date2021-09-22 21:01:04 UTC
HMDB IDHMDB0301777
Secondary Accession NumbersNone
Metabolite Identification
Common NameGlabrin A
Description4,5-dihydroxy-1-methylpiperidine-2-carboxylic acid belongs to the class of organic compounds known as alpha amino acids. These are amino acids in which the amino group is attached to the carbon atom immediately adjacent to the carboxylate group (alpha carbon). Based on a literature review a significant number of articles have been published on 4,5-dihydroxy-1-methylpiperidine-2-carboxylic acid.
Structure
Thumb
Synonyms
ValueSource
4,5-Dihydroxy-1-methylpiperidine-2-carboxylateGenerator
GlabrinMeSH
Chemical FormulaC7H13NO4
Average Molecular Weight175.184
Monoisotopic Molecular Weight175.084457903
IUPAC Name4,5-dihydroxy-1-methylpiperidine-2-carboxylic acid
Traditional Name4,5-dihydroxy-1-methylpiperidine-2-carboxylic acid
CAS Registry Number162157-00-8
SMILES
CN1CC(O)C(O)CC1C(O)=O
InChI Identifier
InChI=1S/C7H13NO4/c1-8-3-6(10)5(9)2-4(8)7(11)12/h4-6,9-10H,2-3H2,1H3,(H,11,12)
InChI KeyVORPREYJNTUAGI-UHFFFAOYSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as alpha amino acids. These are amino acids in which the amino group is attached to the carbon atom immediately adjacent to the carboxylate group (alpha carbon).
KingdomOrganic compounds
Super ClassOrganic acids and derivatives
ClassCarboxylic acids and derivatives
Sub ClassAmino acids, peptides, and analogues
Direct ParentAlpha amino acids
Alternative Parents
Substituents
  • Alpha-amino acid
  • Piperidinecarboxylic acid
  • Piperidine
  • 1,2-aminoalcohol
  • 1,2-diol
  • Amino acid
  • Tertiary aliphatic amine
  • Tertiary amine
  • Secondary alcohol
  • Carboxylic acid
  • Monocarboxylic acid or derivatives
  • Azacycle
  • Organoheterocyclic compound
  • Organic nitrogen compound
  • Organooxygen compound
  • Organonitrogen compound
  • Hydrocarbon derivative
  • Organic oxide
  • Carbonyl group
  • Amine
  • Organopnictogen compound
  • Alcohol
  • Organic oxygen compound
  • Aliphatic heteromonocyclic compound
Molecular FrameworkAliphatic heteromonocyclic compounds
External DescriptorsNot Available
Ontology
Physiological effectNot Available
Disposition
ProcessNot Available
RoleNot Available
Physical Properties
StateNot Available
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
logP-2.1ALOGPS
logP-4.2ChemAxon
logS0.75ALOGPS
pKa (Strongest Acidic)1.4ChemAxon
pKa (Strongest Basic)8.97ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count5ChemAxon
Hydrogen Donor Count3ChemAxon
Polar Surface Area81 ŲChemAxon
Rotatable Bond Count1ChemAxon
Refractivity40.64 m³·mol⁻¹ChemAxon
Polarizability17.13 ųChemAxon
Number of Rings1ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
AllCCS[M+H]+139.66132859911
AllCCS[M+H-H2O]+135.39832859911
AllCCS[M+Na]+144.77832859911
AllCCS[M+NH4]+143.63332859911
AllCCS[M-H]-135.34132859911
AllCCS[M+Na-2H]-136.50732859911
AllCCS[M+HCOO]-137.85932859911
DeepCCS[M+H]+130.78830932474
DeepCCS[M-H]-126.95830932474
DeepCCS[M-2H]-164.21930932474
DeepCCS[M+Na]+139.57430932474

Predicted Kovats Retention Indices

Not Available
Spectra

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Glabrin A 10V, Negative-QTOFsplash10-00e9-0900000000-226b8b54d8260e0a5db92016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Glabrin A 20V, Negative-QTOFsplash10-00di-6900000000-df0a3f1ccb0f27caa5ae2016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Glabrin A 40V, Negative-QTOFsplash10-052f-9000000000-d0201a9f365857ecaeb62016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Glabrin A 10V, Negative-QTOFsplash10-00di-0900000000-43eed7e2af3555e4d03d2021-10-21Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Glabrin A 20V, Negative-QTOFsplash10-00di-1900000000-e7705f68eab8a283129e2021-10-21Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Glabrin A 40V, Negative-QTOFsplash10-0006-9300000000-b4d99bc999390fb5d1e52021-10-21Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Glabrin A 10V, Positive-QTOFsplash10-056r-0900000000-d0d9cc2f98053c7605de2016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Glabrin A 20V, Positive-QTOFsplash10-0bwc-1900000000-41d98b26dee6b4960b622016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Glabrin A 40V, Positive-QTOFsplash10-01ox-9700000000-2a238c145c648069597c2016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Glabrin A 10V, Positive-QTOFsplash10-0a6r-0900000000-a6ef2f2f0896e667106b2021-10-21Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Glabrin A 20V, Positive-QTOFsplash10-06vl-3900000000-dd8f0c8ec6334e6bf7332021-10-21Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Glabrin A 40V, Positive-QTOFsplash10-03dl-9500000000-e20443dedc4fd3efc75e2021-10-21Wishart LabView Spectrum
Biological Properties
Cellular LocationsNot Available
Biospecimen LocationsNot Available
Tissue LocationsNot Available
Pathways
Normal Concentrations
Not Available
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDFDB001286
KNApSAcK IDNot Available
Chemspider ID142147
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound161850
PDB IDNot Available
ChEBI IDNot Available
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General ReferencesNot Available