Showing metabocard for Diarctigenin (HMDB0302059)
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Version | 5.0 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Status | Expected but not Quantified | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Creation Date | 2021-09-23 06:09:17 UTC | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Update Date | 2021-09-23 06:09:17 UTC | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
HMDB ID | HMDB0302059 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Secondary Accession Numbers | None | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Metabolite Identification | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Common Name | Diarctigenin | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Description | Diarctigenin is a member of the class of compounds known as dibenzylbutyrolactone lignans. Dibenzylbutyrolactone lignans are lignan compounds containing a 3,4-dibenzyloxolan-2-one moiety. Diarctigenin is practically insoluble (in water) and a very weakly acidic compound (based on its pKa). Diarctigenin can be found in burdock, which makes diarctigenin a potential biomarker for the consumption of this food product. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Structure | MOL for HMDB0302059 (Diarctigenin)Mrv0541 02241212192D 54 59 0 0 0 0 999 V2000 -3.1821 1.1786 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 -3.8966 0.7661 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 -3.8966 -0.0589 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 -3.1821 -0.4714 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 -2.4677 -0.0589 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 -2.4677 0.7661 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 -1.7532 1.1786 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 -1.0387 2.4161 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 -1.7532 2.0036 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 -1.0387 0.7661 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 -0.3243 1.1786 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 -0.3243 2.0036 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 -3.1821 -1.2964 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0 -2.4677 -1.7089 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 -1.7532 -0.4714 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0 -2.4677 2.4161 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0 -1.0387 3.2411 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0 -0.3243 3.6536 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 2.3272 1.6635 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0 1.8422 2.3309 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1.0576 2.0760 0.0000 C 0 0 1 0 0 0 0 0 0 0 0 0 1.0576 1.2510 0.0000 C 0 0 2 0 0 0 0 0 0 0 0 0 1.8422 0.9961 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 2.0971 0.2115 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0 0.3902 0.7661 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1.6277 4.7044 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 0.8027 4.7044 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 0.3902 3.9899 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 0.8027 3.2754 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1.6277 3.2754 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 2.0402 3.9899 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 2.0402 5.4188 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0 2.8652 5.4188 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 0.3902 5.4188 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0 -0.4348 5.4188 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 0.3902 2.5609 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 -6.6153 1.9136 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0 -6.7443 1.0988 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 -6.0093 0.7243 0.0000 C 0 0 1 0 0 0 0 0 0 0 0 0 -5.4259 1.3076 0.0000 C 0 0 2 0 0 0 0 0 0 0 0 0 -5.8004 2.0427 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 -5.4259 2.7778 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0 -4.6111 1.1786 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 -8.2709 -0.7312 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 -7.6876 -1.3145 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 -6.8907 -1.1010 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 -6.6771 -0.3041 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 -7.2605 0.2793 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 -8.0574 0.0657 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 -9.0678 -0.9447 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0 -9.6512 -0.3613 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 -7.9011 -2.1114 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0 -7.3177 -2.6948 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 -5.8802 -0.0906 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1 2 2 0 0 0 0 1 6 1 0 0 0 0 2 3 1 0 0 0 0 3 4 2 0 0 0 0 4 5 1 0 0 0 0 5 6 2 0 0 0 0 6 7 1 0 0 0 0 9 7 2 0 0 0 0 7 10 1 0 0 0 0 8 9 1 0 0 0 0 8 12 2 0 0 0 0 10 11 2 0 0 0 0 11 12 1 0 0 0 0 2 43 1 0 0 0 0 4 13 1 0 0 0 0 13 14 1 0 0 0 0 5 15 1 0 0 0 0 9 16 1 0 0 0 0 8 17 1 0 0 0 0 17 18 1 0 0 0 0 11 25 1 0 0 0 0 19 20 1 0 0 0 0 19 23 1 0 0 0 0 20 21 1 0 0 0 0 21 22 1 0 0 0 0 22 23 1 0 0 0 0 23 24 2 0 0 0 0 22 25 1 6 0 0 0 21 36 1 1 0 0 0 26 27 2 0 0 0 0 26 31 1 0 0 0 0 27 28 1 0 0 0 0 28 29 2 0 0 0 0 29 30 1 0 0 0 0 30 31 2 0 0 0 0 26 32 1 0 0 0 0 32 33 1 0 0 0 0 27 34 1 0 0 0 0 34 35 1 0 0 0 0 29 36 1 0 0 0 0 37 38 1 0 0 0 0 37 41 1 0 0 0 0 38 39 1 0 0 0 0 39 40 1 0 0 0 0 39 54 1 1 0 0 0 40 41 1 0 0 0 0 40 43 1 6 0 0 0 41 42 2 0 0 0 0 44 45 2 0 0 0 0 44 49 1 0 0 0 0 44 50 1 0 0 0 0 45 46 1 0 0 0 0 45 52 1 0 0 0 0 46 47 2 0 0 0 0 47 48 1 0 0 0 0 47 54 1 0 0 0 0 48 49 2 0 0 0 0 50 51 1 0 0 0 0 52 53 1 0 0 0 0 M END 3D MOL for HMDB0302059 (Diarctigenin)HMDB0302059 RDKit 3D Diarctigenin 100105 0 0 0 0 0 0 0 0999 V2000 8.9950 -2.2710 -3.3863 C 0 0 0 0 0 0 0 0 0 0 0 0 9.5738 -1.1319 -2.7765 O 0 0 0 0 0 0 0 0 0 0 0 0 9.0076 -0.6878 -1.5763 C 0 0 0 0 0 0 0 0 0 0 0 0 7.9313 -1.3249 -0.9998 C 0 0 0 0 0 0 0 0 0 0 0 0 7.3946 -0.8589 0.1888 C 0 0 0 0 0 0 0 0 0 0 0 0 7.9114 0.2471 0.8318 C 0 0 0 0 0 0 0 0 0 0 0 0 7.3131 0.7036 2.0823 C 0 0 0 0 0 0 0 0 0 0 0 0 6.2258 1.7075 1.9220 C 0 0 1 0 0 0 0 0 0 0 0 0 6.6827 2.9806 1.2278 C 0 0 0 0 0 0 0 0 0 0 0 0 5.4060 3.5879 0.9813 O 0 0 0 0 0 0 0 0 0 0 0 0 4.5108 2.5631 0.6078 C 0 0 0 0 0 0 0 0 0 0 0 0 3.4341 2.8321 0.0575 O 0 0 0 0 0 0 0 0 0 0 0 0 5.1127 1.2665 0.9904 C 0 0 2 0 0 0 0 0 0 0 0 0 4.2202 0.3396 1.7297 C 0 0 0 0 0 0 0 0 0 0 0 0 3.0763 -0.1996 0.9906 C 0 0 0 0 0 0 0 0 0 0 0 0 3.2276 -1.3611 0.2196 C 0 0 0 0 0 0 0 0 0 0 0 0 2.1774 -1.9191 -0.4641 C 0 0 0 0 0 0 0 0 0 0 0 0 2.2454 -3.0511 -1.2377 O 0 0 0 0 0 0 0 0 0 0 0 0 3.3864 -3.8286 -1.4651 C 0 0 0 0 0 0 0 0 0 0 0 0 0.9516 -1.2759 -0.3547 C 0 0 0 0 0 0 0 0 0 0 0 0 -0.1408 -1.8159 -1.0375 O 0 0 0 0 0 0 0 0 0 0 0 0 0.7668 -0.1341 0.3936 C 0 0 0 0 0 0 0 0 0 0 0 0 -0.5441 0.4978 0.5192 C 0 0 0 0 0 0 0 0 0 0 0 0 -1.6669 -0.2561 0.8435 C 0 0 0 0 0 0 0 0 0 0 0 0 -2.9260 0.2883 1.0179 C 0 0 0 0 0 0 0 0 0 0 0 0 -4.0428 -0.5880 1.3621 C 0 0 0 0 0 0 0 0 0 0 0 0 -4.9076 -1.0625 0.2590 C 0 0 1 0 0 0 0 0 0 0 0 0 -4.1709 -1.8232 -0.7673 C 0 0 0 0 0 0 0 0 0 0 0 0 -3.1418 -1.4921 -1.3677 O 0 0 0 0 0 0 0 0 0 0 0 0 -4.8040 -3.0601 -1.0165 O 0 0 0 0 0 0 0 0 0 0 0 0 -6.0658 -3.0672 -0.3284 C 0 0 0 0 0 0 0 0 0 0 0 0 -5.7817 -2.1810 0.8601 C 0 0 2 0 0 0 0 0 0 0 0 0 -6.9535 -1.6493 1.5683 C 0 0 0 0 0 0 0 0 0 0 0 0 -7.8841 -0.8382 0.7324 C 0 0 0 0 0 0 0 0 0 0 0 0 -7.7600 0.5193 0.6360 C 0 0 0 0 0 0 0 0 0 0 0 0 -8.6350 1.2305 -0.1444 C 0 0 0 0 0 0 0 0 0 0 0 0 -9.6513 0.6223 -0.8462 C 0 0 0 0 0 0 0 0 0 0 0 0 -10.5552 1.3076 -1.6422 O 0 0 0 0 0 0 0 0 0 0 0 0 -10.4698 2.7122 -1.7687 C 0 0 0 0 0 0 0 0 0 0 0 0 -9.7510 -0.7647 -0.7269 C 0 0 0 0 0 0 0 0 0 0 0 0 -10.7591 -1.4234 -1.4150 O 0 0 0 0 0 0 0 0 0 0 0 0 -10.8767 -2.8258 -1.3042 C 0 0 0 0 0 0 0 0 0 0 0 0 -8.8805 -1.4869 0.0511 C 0 0 0 0 0 0 0 0 0 0 0 0 -3.0408 1.6563 0.8514 C 0 0 0 0 0 0 0 0 0 0 0 0 -1.9594 2.4411 0.5287 C 0 0 0 0 0 0 0 0 0 0 0 0 -2.0853 3.8124 0.3624 O 0 0 0 0 0 0 0 0 0 0 0 0 -3.3351 4.4523 0.5177 C 0 0 0 0 0 0 0 0 0 0 0 0 -0.7004 1.8584 0.3611 C 0 0 0 0 0 0 0 0 0 0 0 0 0.3804 2.6565 0.0358 O 0 0 0 0 0 0 0 0 0 0 0 0 1.8440 0.4081 1.0718 C 0 0 0 0 0 0 0 0 0 0 0 0 8.9847 0.8696 0.2421 C 0 0 0 0 0 0 0 0 0 0 0 0 9.5422 0.4313 -0.9393 C 0 0 0 0 0 0 0 0 0 0 0 0 10.6288 1.0459 -1.5532 O 0 0 0 0 0 0 0 0 0 0 0 0 11.2014 2.1855 -0.9395 C 0 0 0 0 0 0 0 0 0 0 0 0 7.9328 -2.0820 -3.6939 H 0 0 0 0 0 0 0 0 0 0 0 0 9.5648 -2.5919 -4.2818 H 0 0 0 0 0 0 0 0 0 0 0 0 8.9884 -3.1425 -2.6787 H 0 0 0 0 0 0 0 0 0 0 0 0 7.5450 -2.1860 -1.5247 H 0 0 0 0 0 0 0 0 0 0 0 0 6.5513 -1.3962 0.5976 H 0 0 0 0 0 0 0 0 0 0 0 0 8.1185 1.2051 2.6900 H 0 0 0 0 0 0 0 0 0 0 0 0 6.9555 -0.1202 2.7336 H 0 0 0 0 0 0 0 0 0 0 0 0 5.7749 1.9874 2.8720 H 0 0 0 0 0 0 0 0 0 0 0 0 7.2280 2.7722 0.2945 H 0 0 0 0 0 0 0 0 0 0 0 0 7.2098 3.6508 1.9295 H 0 0 0 0 0 0 0 0 0 0 0 0 5.5955 0.8126 0.0987 H 0 0 0 0 0 0 0 0 0 0 0 0 4.8596 -0.4536 2.1791 H 0 0 0 0 0 0 0 0 0 0 0 0 3.8181 0.9048 2.6108 H 0 0 0 0 0 0 0 0 0 0 0 0 4.1903 -1.8462 0.1519 H 0 0 0 0 0 0 0 0 0 0 0 0 3.1086 -4.6105 -2.2105 H 0 0 0 0 0 0 0 0 0 0 0 0 4.1918 -3.1615 -1.8349 H 0 0 0 0 0 0 0 0 0 0 0 0 3.7022 -4.3957 -0.5523 H 0 0 0 0 0 0 0 0 0 0 0 0 -0.0802 -2.6439 -1.5986 H 0 0 0 0 0 0 0 0 0 0 0 0 -1.4945 -1.3225 0.9552 H 0 0 0 0 0 0 0 0 0 0 0 0 -4.6640 -0.1502 2.2023 H 0 0 0 0 0 0 0 0 0 0 0 0 -3.6104 -1.5172 1.8471 H 0 0 0 0 0 0 0 0 0 0 0 0 -5.5952 -0.3156 -0.1746 H 0 0 0 0 0 0 0 0 0 0 0 0 -6.3193 -4.1083 -0.0469 H 0 0 0 0 0 0 0 0 0 0 0 0 -6.7813 -2.6151 -1.0421 H 0 0 0 0 0 0 0 0 0 0 0 0 -5.1668 -2.7677 1.5756 H 0 0 0 0 0 0 0 0 0 0 0 0 -6.5845 -0.9726 2.3817 H 0 0 0 0 0 0 0 0 0 0 0 0 -7.5057 -2.4516 2.0887 H 0 0 0 0 0 0 0 0 0 0 0 0 -6.9721 1.0628 1.1778 H 0 0 0 0 0 0 0 0 0 0 0 0 -8.5668 2.3237 -0.2507 H 0 0 0 0 0 0 0 0 0 0 0 0 -11.4072 3.0990 -2.2201 H 0 0 0 0 0 0 0 0 0 0 0 0 -10.3593 3.1475 -0.7401 H 0 0 0 0 0 0 0 0 0 0 0 0 -9.5620 2.9775 -2.3321 H 0 0 0 0 0 0 0 0 0 0 0 0 -11.7310 -3.1239 -1.9679 H 0 0 0 0 0 0 0 0 0 0 0 0 -9.9904 -3.3665 -1.6886 H 0 0 0 0 0 0 0 0 0 0 0 0 -11.1087 -3.0805 -0.2476 H 0 0 0 0 0 0 0 0 0 0 0 0 -8.9834 -2.5885 0.1291 H 0 0 0 0 0 0 0 0 0 0 0 0 -3.9929 2.1156 0.9745 H 0 0 0 0 0 0 0 0 0 0 0 0 -3.1876 5.5120 0.2545 H 0 0 0 0 0 0 0 0 0 0 0 0 -4.0288 3.9838 -0.2144 H 0 0 0 0 0 0 0 0 0 0 0 0 -3.6687 4.2972 1.5682 H 0 0 0 0 0 0 0 0 0 0 0 0 0.2290 3.6479 -0.0707 H 0 0 0 0 0 0 0 0 0 0 0 0 1.6553 1.3041 1.6475 H 0 0 0 0 0 0 0 0 0 0 0 0 9.4346 1.7548 0.7122 H 0 0 0 0 0 0 0 0 0 0 0 0 12.1632 2.4762 -1.4479 H 0 0 0 0 0 0 0 0 0 0 0 0 11.3624 2.0440 0.1319 H 0 0 0 0 0 0 0 0 0 0 0 0 10.5386 3.0865 -1.0564 H 0 0 0 0 0 0 0 0 0 0 0 0 1 2 1 0 2 3 1 0 3 4 2 0 4 5 1 0 5 6 2 0 6 7 1 0 7 8 1 0 8 9 1 0 9 10 1 0 10 11 1 0 11 12 2 0 11 13 1 0 13 14 1 0 14 15 1 0 15 16 2 0 16 17 1 0 17 18 1 0 18 19 1 0 17 20 2 0 20 21 1 0 20 22 1 0 22 23 1 0 23 24 2 0 24 25 1 0 25 26 1 0 26 27 1 0 27 28 1 0 28 29 2 0 28 30 1 0 30 31 1 0 31 32 1 0 32 33 1 0 33 34 1 0 34 35 2 0 35 36 1 0 36 37 2 0 37 38 1 0 38 39 1 0 37 40 1 0 40 41 1 0 41 42 1 0 40 43 2 0 25 44 2 0 44 45 1 0 45 46 1 0 46 47 1 0 45 48 2 0 48 49 1 0 22 50 2 0 6 51 1 0 51 52 2 0 52 53 1 0 53 54 1 0 52 3 1 0 13 8 1 0 50 15 1 0 48 23 1 0 32 27 1 0 43 34 1 0 1 55 1 0 1 56 1 0 1 57 1 0 4 58 1 0 5 59 1 0 7 60 1 0 7 61 1 0 8 62 1 1 9 63 1 0 9 64 1 0 13 65 1 6 14 66 1 0 14 67 1 0 16 68 1 0 19 69 1 0 19 70 1 0 19 71 1 0 21 72 1 0 24 73 1 0 26 74 1 0 26 75 1 0 27 76 1 6 31 77 1 0 31 78 1 0 32 79 1 1 33 80 1 0 33 81 1 0 35 82 1 0 36 83 1 0 39 84 1 0 39 85 1 0 39 86 1 0 42 87 1 0 42 88 1 0 42 89 1 0 43 90 1 0 44 91 1 0 47 92 1 0 47 93 1 0 47 94 1 0 49 95 1 0 50 96 1 0 51 97 1 0 54 98 1 0 54 99 1 0 54100 1 0 M END 3D SDF for HMDB0302059 (Diarctigenin)Mrv0541 02241212192D 54 59 0 0 0 0 999 V2000 -3.1821 1.1786 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 -3.8966 0.7661 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 -3.8966 -0.0589 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 -3.1821 -0.4714 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 -2.4677 -0.0589 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 -2.4677 0.7661 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 -1.7532 1.1786 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 -1.0387 2.4161 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 -1.7532 2.0036 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 -1.0387 0.7661 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 -0.3243 1.1786 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 -0.3243 2.0036 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 -3.1821 -1.2964 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0 -2.4677 -1.7089 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 -1.7532 -0.4714 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0 -2.4677 2.4161 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0 -1.0387 3.2411 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0 -0.3243 3.6536 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 2.3272 1.6635 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0 1.8422 2.3309 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1.0576 2.0760 0.0000 C 0 0 1 0 0 0 0 0 0 0 0 0 1.0576 1.2510 0.0000 C 0 0 2 0 0 0 0 0 0 0 0 0 1.8422 0.9961 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 2.0971 0.2115 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0 0.3902 0.7661 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1.6277 4.7044 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 0.8027 4.7044 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 0.3902 3.9899 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 0.8027 3.2754 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1.6277 3.2754 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 2.0402 3.9899 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 2.0402 5.4188 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0 2.8652 5.4188 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 0.3902 5.4188 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0 -0.4348 5.4188 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 0.3902 2.5609 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 -6.6153 1.9136 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0 -6.7443 1.0988 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 -6.0093 0.7243 0.0000 C 0 0 1 0 0 0 0 0 0 0 0 0 -5.4259 1.3076 0.0000 C 0 0 2 0 0 0 0 0 0 0 0 0 -5.8004 2.0427 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 -5.4259 2.7778 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0 -4.6111 1.1786 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 -8.2709 -0.7312 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 -7.6876 -1.3145 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 -6.8907 -1.1010 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 -6.6771 -0.3041 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 -7.2605 0.2793 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 -8.0574 0.0657 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 -9.0678 -0.9447 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0 -9.6512 -0.3613 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 -7.9011 -2.1114 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0 -7.3177 -2.6948 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 -5.8802 -0.0906 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1 2 2 0 0 0 0 1 6 1 0 0 0 0 2 3 1 0 0 0 0 3 4 2 0 0 0 0 4 5 1 0 0 0 0 5 6 2 0 0 0 0 6 7 1 0 0 0 0 9 7 2 0 0 0 0 7 10 1 0 0 0 0 8 9 1 0 0 0 0 8 12 2 0 0 0 0 10 11 2 0 0 0 0 11 12 1 0 0 0 0 2 43 1 0 0 0 0 4 13 1 0 0 0 0 13 14 1 0 0 0 0 5 15 1 0 0 0 0 9 16 1 0 0 0 0 8 17 1 0 0 0 0 17 18 1 0 0 0 0 11 25 1 0 0 0 0 19 20 1 0 0 0 0 19 23 1 0 0 0 0 20 21 1 0 0 0 0 21 22 1 0 0 0 0 22 23 1 0 0 0 0 23 24 2 0 0 0 0 22 25 1 6 0 0 0 21 36 1 1 0 0 0 26 27 2 0 0 0 0 26 31 1 0 0 0 0 27 28 1 0 0 0 0 28 29 2 0 0 0 0 29 30 1 0 0 0 0 30 31 2 0 0 0 0 26 32 1 0 0 0 0 32 33 1 0 0 0 0 27 34 1 0 0 0 0 34 35 1 0 0 0 0 29 36 1 0 0 0 0 37 38 1 0 0 0 0 37 41 1 0 0 0 0 38 39 1 0 0 0 0 39 40 1 0 0 0 0 39 54 1 1 0 0 0 40 41 1 0 0 0 0 40 43 1 6 0 0 0 41 42 2 0 0 0 0 44 45 2 0 0 0 0 44 49 1 0 0 0 0 44 50 1 0 0 0 0 45 46 1 0 0 0 0 45 52 1 0 0 0 0 46 47 2 0 0 0 0 47 48 1 0 0 0 0 47 54 1 0 0 0 0 48 49 2 0 0 0 0 50 51 1 0 0 0 0 52 53 1 0 0 0 0 M END > <DATABASE_ID> HMDB0302059 > <DATABASE_NAME> hmdb > <SMILES> COC1=CC(C[C@@H]2[C@@H](CC3=CC(OC)=C(OC)C=C3)COC2=O)=CC(=C1O)C1=C(O)C(OC)=CC(C[C@@H]2[C@@H](CC3=CC(OC)=C(OC)C=C3)COC2=O)=C1 > <INCHI_IDENTIFIER> InChI=1S/C42H46O12/c1-47-33-9-7-23(17-35(33)49-3)11-27-21-53-41(45)29(27)13-25-15-31(39(43)37(19-25)51-5)32-16-26(20-38(52-6)40(32)44)14-30-28(22-54-42(30)46)12-24-8-10-34(48-2)36(18-24)50-4/h7-10,15-20,27-30,43-44H,11-14,21-22H2,1-6H3/t27-,28-,29+,30+/m0/s1 > <INCHI_KEY> XYMRYKOVQDOJFH-VZNYXHRGSA-N > <FORMULA> C42H46O12 > <MOLECULAR_WEIGHT> 742.8074 > <EXACT_MASS> 742.298926936 > <JCHEM_ACCEPTOR_COUNT> 10 > <JCHEM_AVERAGE_POLARIZABILITY> 77.7675134720516 > <JCHEM_BIOAVAILABILITY> 0 > <JCHEM_DONOR_COUNT> 2 > <JCHEM_FORMAL_CHARGE> 0 > <JCHEM_GHOSE_FILTER> 0 > <JCHEM_IUPAC> (3R,4R)-4-[(3,4-dimethoxyphenyl)methyl]-3-{[3-(5-{[(3R,4R)-4-[(3,4-dimethoxyphenyl)methyl]-2-oxooxolan-3-yl]methyl}-2-hydroxy-3-methoxyphenyl)-4-hydroxy-5-methoxyphenyl]methyl}oxolan-2-one > <ALOGPS_LOGP> 5.75 > <JCHEM_LOGP> 6.549332679999999 > <ALOGPS_LOGS> -5.90 > <JCHEM_MDDR_LIKE_RULE> 1 > <JCHEM_NUMBER_OF_RINGS> 6 > <JCHEM_PHYSIOLOGICAL_CHARGE> 0 > <JCHEM_PKA> 10.02489647348956 > <JCHEM_PKA_STRONGEST_ACIDIC> 9.167082302810684 > <JCHEM_PKA_STRONGEST_BASIC> -4.116093803662364 > <JCHEM_POLAR_SURFACE_AREA> 148.44 > <JCHEM_REFRACTIVITY> 199.31159999999997 > <JCHEM_ROTATABLE_BOND_COUNT> 15 > <JCHEM_RULE_OF_FIVE> 0 > <ALOGPS_SOLUBILITY> 9.42e-04 g/l > <JCHEM_TRADITIONAL_IUPAC> (3R,4R)-4-[(3,4-dimethoxyphenyl)methyl]-3-{[3-(5-{[(3R,4R)-4-[(3,4-dimethoxyphenyl)methyl]-2-oxooxolan-3-yl]methyl}-2-hydroxy-3-methoxyphenyl)-4-hydroxy-5-methoxyphenyl]methyl}oxolan-2-one > <JCHEM_VEBER_RULE> 0 $$$$ 3D-SDF for HMDB0302059 (Diarctigenin)HMDB0302059 RDKit 3D Diarctigenin 100105 0 0 0 0 0 0 0 0999 V2000 8.9950 -2.2710 -3.3863 C 0 0 0 0 0 0 0 0 0 0 0 0 9.5738 -1.1319 -2.7765 O 0 0 0 0 0 0 0 0 0 0 0 0 9.0076 -0.6878 -1.5763 C 0 0 0 0 0 0 0 0 0 0 0 0 7.9313 -1.3249 -0.9998 C 0 0 0 0 0 0 0 0 0 0 0 0 7.3946 -0.8589 0.1888 C 0 0 0 0 0 0 0 0 0 0 0 0 7.9114 0.2471 0.8318 C 0 0 0 0 0 0 0 0 0 0 0 0 7.3131 0.7036 2.0823 C 0 0 0 0 0 0 0 0 0 0 0 0 6.2258 1.7075 1.9220 C 0 0 1 0 0 0 0 0 0 0 0 0 6.6827 2.9806 1.2278 C 0 0 0 0 0 0 0 0 0 0 0 0 5.4060 3.5879 0.9813 O 0 0 0 0 0 0 0 0 0 0 0 0 4.5108 2.5631 0.6078 C 0 0 0 0 0 0 0 0 0 0 0 0 3.4341 2.8321 0.0575 O 0 0 0 0 0 0 0 0 0 0 0 0 5.1127 1.2665 0.9904 C 0 0 2 0 0 0 0 0 0 0 0 0 4.2202 0.3396 1.7297 C 0 0 0 0 0 0 0 0 0 0 0 0 3.0763 -0.1996 0.9906 C 0 0 0 0 0 0 0 0 0 0 0 0 3.2276 -1.3611 0.2196 C 0 0 0 0 0 0 0 0 0 0 0 0 2.1774 -1.9191 -0.4641 C 0 0 0 0 0 0 0 0 0 0 0 0 2.2454 -3.0511 -1.2377 O 0 0 0 0 0 0 0 0 0 0 0 0 3.3864 -3.8286 -1.4651 C 0 0 0 0 0 0 0 0 0 0 0 0 0.9516 -1.2759 -0.3547 C 0 0 0 0 0 0 0 0 0 0 0 0 -0.1408 -1.8159 -1.0375 O 0 0 0 0 0 0 0 0 0 0 0 0 0.7668 -0.1341 0.3936 C 0 0 0 0 0 0 0 0 0 0 0 0 -0.5441 0.4978 0.5192 C 0 0 0 0 0 0 0 0 0 0 0 0 -1.6669 -0.2561 0.8435 C 0 0 0 0 0 0 0 0 0 0 0 0 -2.9260 0.2883 1.0179 C 0 0 0 0 0 0 0 0 0 0 0 0 -4.0428 -0.5880 1.3621 C 0 0 0 0 0 0 0 0 0 0 0 0 -4.9076 -1.0625 0.2590 C 0 0 1 0 0 0 0 0 0 0 0 0 -4.1709 -1.8232 -0.7673 C 0 0 0 0 0 0 0 0 0 0 0 0 -3.1418 -1.4921 -1.3677 O 0 0 0 0 0 0 0 0 0 0 0 0 -4.8040 -3.0601 -1.0165 O 0 0 0 0 0 0 0 0 0 0 0 0 -6.0658 -3.0672 -0.3284 C 0 0 0 0 0 0 0 0 0 0 0 0 -5.7817 -2.1810 0.8601 C 0 0 2 0 0 0 0 0 0 0 0 0 -6.9535 -1.6493 1.5683 C 0 0 0 0 0 0 0 0 0 0 0 0 -7.8841 -0.8382 0.7324 C 0 0 0 0 0 0 0 0 0 0 0 0 -7.7600 0.5193 0.6360 C 0 0 0 0 0 0 0 0 0 0 0 0 -8.6350 1.2305 -0.1444 C 0 0 0 0 0 0 0 0 0 0 0 0 -9.6513 0.6223 -0.8462 C 0 0 0 0 0 0 0 0 0 0 0 0 -10.5552 1.3076 -1.6422 O 0 0 0 0 0 0 0 0 0 0 0 0 -10.4698 2.7122 -1.7687 C 0 0 0 0 0 0 0 0 0 0 0 0 -9.7510 -0.7647 -0.7269 C 0 0 0 0 0 0 0 0 0 0 0 0 -10.7591 -1.4234 -1.4150 O 0 0 0 0 0 0 0 0 0 0 0 0 -10.8767 -2.8258 -1.3042 C 0 0 0 0 0 0 0 0 0 0 0 0 -8.8805 -1.4869 0.0511 C 0 0 0 0 0 0 0 0 0 0 0 0 -3.0408 1.6563 0.8514 C 0 0 0 0 0 0 0 0 0 0 0 0 -1.9594 2.4411 0.5287 C 0 0 0 0 0 0 0 0 0 0 0 0 -2.0853 3.8124 0.3624 O 0 0 0 0 0 0 0 0 0 0 0 0 -3.3351 4.4523 0.5177 C 0 0 0 0 0 0 0 0 0 0 0 0 -0.7004 1.8584 0.3611 C 0 0 0 0 0 0 0 0 0 0 0 0 0.3804 2.6565 0.0358 O 0 0 0 0 0 0 0 0 0 0 0 0 1.8440 0.4081 1.0718 C 0 0 0 0 0 0 0 0 0 0 0 0 8.9847 0.8696 0.2421 C 0 0 0 0 0 0 0 0 0 0 0 0 9.5422 0.4313 -0.9393 C 0 0 0 0 0 0 0 0 0 0 0 0 10.6288 1.0459 -1.5532 O 0 0 0 0 0 0 0 0 0 0 0 0 11.2014 2.1855 -0.9395 C 0 0 0 0 0 0 0 0 0 0 0 0 7.9328 -2.0820 -3.6939 H 0 0 0 0 0 0 0 0 0 0 0 0 9.5648 -2.5919 -4.2818 H 0 0 0 0 0 0 0 0 0 0 0 0 8.9884 -3.1425 -2.6787 H 0 0 0 0 0 0 0 0 0 0 0 0 7.5450 -2.1860 -1.5247 H 0 0 0 0 0 0 0 0 0 0 0 0 6.5513 -1.3962 0.5976 H 0 0 0 0 0 0 0 0 0 0 0 0 8.1185 1.2051 2.6900 H 0 0 0 0 0 0 0 0 0 0 0 0 6.9555 -0.1202 2.7336 H 0 0 0 0 0 0 0 0 0 0 0 0 5.7749 1.9874 2.8720 H 0 0 0 0 0 0 0 0 0 0 0 0 7.2280 2.7722 0.2945 H 0 0 0 0 0 0 0 0 0 0 0 0 7.2098 3.6508 1.9295 H 0 0 0 0 0 0 0 0 0 0 0 0 5.5955 0.8126 0.0987 H 0 0 0 0 0 0 0 0 0 0 0 0 4.8596 -0.4536 2.1791 H 0 0 0 0 0 0 0 0 0 0 0 0 3.8181 0.9048 2.6108 H 0 0 0 0 0 0 0 0 0 0 0 0 4.1903 -1.8462 0.1519 H 0 0 0 0 0 0 0 0 0 0 0 0 3.1086 -4.6105 -2.2105 H 0 0 0 0 0 0 0 0 0 0 0 0 4.1918 -3.1615 -1.8349 H 0 0 0 0 0 0 0 0 0 0 0 0 3.7022 -4.3957 -0.5523 H 0 0 0 0 0 0 0 0 0 0 0 0 -0.0802 -2.6439 -1.5986 H 0 0 0 0 0 0 0 0 0 0 0 0 -1.4945 -1.3225 0.9552 H 0 0 0 0 0 0 0 0 0 0 0 0 -4.6640 -0.1502 2.2023 H 0 0 0 0 0 0 0 0 0 0 0 0 -3.6104 -1.5172 1.8471 H 0 0 0 0 0 0 0 0 0 0 0 0 -5.5952 -0.3156 -0.1746 H 0 0 0 0 0 0 0 0 0 0 0 0 -6.3193 -4.1083 -0.0469 H 0 0 0 0 0 0 0 0 0 0 0 0 -6.7813 -2.6151 -1.0421 H 0 0 0 0 0 0 0 0 0 0 0 0 -5.1668 -2.7677 1.5756 H 0 0 0 0 0 0 0 0 0 0 0 0 -6.5845 -0.9726 2.3817 H 0 0 0 0 0 0 0 0 0 0 0 0 -7.5057 -2.4516 2.0887 H 0 0 0 0 0 0 0 0 0 0 0 0 -6.9721 1.0628 1.1778 H 0 0 0 0 0 0 0 0 0 0 0 0 -8.5668 2.3237 -0.2507 H 0 0 0 0 0 0 0 0 0 0 0 0 -11.4072 3.0990 -2.2201 H 0 0 0 0 0 0 0 0 0 0 0 0 -10.3593 3.1475 -0.7401 H 0 0 0 0 0 0 0 0 0 0 0 0 -9.5620 2.9775 -2.3321 H 0 0 0 0 0 0 0 0 0 0 0 0 -11.7310 -3.1239 -1.9679 H 0 0 0 0 0 0 0 0 0 0 0 0 -9.9904 -3.3665 -1.6886 H 0 0 0 0 0 0 0 0 0 0 0 0 -11.1087 -3.0805 -0.2476 H 0 0 0 0 0 0 0 0 0 0 0 0 -8.9834 -2.5885 0.1291 H 0 0 0 0 0 0 0 0 0 0 0 0 -3.9929 2.1156 0.9745 H 0 0 0 0 0 0 0 0 0 0 0 0 -3.1876 5.5120 0.2545 H 0 0 0 0 0 0 0 0 0 0 0 0 -4.0288 3.9838 -0.2144 H 0 0 0 0 0 0 0 0 0 0 0 0 -3.6687 4.2972 1.5682 H 0 0 0 0 0 0 0 0 0 0 0 0 0.2290 3.6479 -0.0707 H 0 0 0 0 0 0 0 0 0 0 0 0 1.6553 1.3041 1.6475 H 0 0 0 0 0 0 0 0 0 0 0 0 9.4346 1.7548 0.7122 H 0 0 0 0 0 0 0 0 0 0 0 0 12.1632 2.4762 -1.4479 H 0 0 0 0 0 0 0 0 0 0 0 0 11.3624 2.0440 0.1319 H 0 0 0 0 0 0 0 0 0 0 0 0 10.5386 3.0865 -1.0564 H 0 0 0 0 0 0 0 0 0 0 0 0 1 2 1 0 2 3 1 0 3 4 2 0 4 5 1 0 5 6 2 0 6 7 1 0 7 8 1 0 8 9 1 0 9 10 1 0 10 11 1 0 11 12 2 0 11 13 1 0 13 14 1 0 14 15 1 0 15 16 2 0 16 17 1 0 17 18 1 0 18 19 1 0 17 20 2 0 20 21 1 0 20 22 1 0 22 23 1 0 23 24 2 0 24 25 1 0 25 26 1 0 26 27 1 0 27 28 1 0 28 29 2 0 28 30 1 0 30 31 1 0 31 32 1 0 32 33 1 0 33 34 1 0 34 35 2 0 35 36 1 0 36 37 2 0 37 38 1 0 38 39 1 0 37 40 1 0 40 41 1 0 41 42 1 0 40 43 2 0 25 44 2 0 44 45 1 0 45 46 1 0 46 47 1 0 45 48 2 0 48 49 1 0 22 50 2 0 6 51 1 0 51 52 2 0 52 53 1 0 53 54 1 0 52 3 1 0 13 8 1 0 50 15 1 0 48 23 1 0 32 27 1 0 43 34 1 0 1 55 1 0 1 56 1 0 1 57 1 0 4 58 1 0 5 59 1 0 7 60 1 0 7 61 1 0 8 62 1 1 9 63 1 0 9 64 1 0 13 65 1 6 14 66 1 0 14 67 1 0 16 68 1 0 19 69 1 0 19 70 1 0 19 71 1 0 21 72 1 0 24 73 1 0 26 74 1 0 26 75 1 0 27 76 1 6 31 77 1 0 31 78 1 0 32 79 1 1 33 80 1 0 33 81 1 0 35 82 1 0 36 83 1 0 39 84 1 0 39 85 1 0 39 86 1 0 42 87 1 0 42 88 1 0 42 89 1 0 43 90 1 0 44 91 1 0 47 92 1 0 47 93 1 0 47 94 1 0 49 95 1 0 50 96 1 0 51 97 1 0 54 98 1 0 54 99 1 0 54100 1 0 M END PDB for HMDB0302059 (Diarctigenin)HEADER PROTEIN 24-FEB-12 NONE TITLE NULL COMPND NULL SOURCE NULL KEYWDS NULL EXPDTA NULL AUTHOR Marvin REVDAT 1 24-FEB-12 0 HETATM 1 C UNK 0 -5.940 2.200 0.000 0.00 0.00 C+0 HETATM 2 C UNK 0 -7.274 1.430 0.000 0.00 0.00 C+0 HETATM 3 C UNK 0 -7.274 -0.110 0.000 0.00 0.00 C+0 HETATM 4 C UNK 0 -5.940 -0.880 0.000 0.00 0.00 C+0 HETATM 5 C UNK 0 -4.606 -0.110 0.000 0.00 0.00 C+0 HETATM 6 C UNK 0 -4.606 1.430 0.000 0.00 0.00 C+0 HETATM 7 C UNK 0 -3.273 2.200 0.000 0.00 0.00 C+0 HETATM 8 C UNK 0 -1.939 4.510 0.000 0.00 0.00 C+0 HETATM 9 C UNK 0 -3.273 3.740 0.000 0.00 0.00 C+0 HETATM 10 C UNK 0 -1.939 1.430 0.000 0.00 0.00 C+0 HETATM 11 C UNK 0 -0.605 2.200 0.000 0.00 0.00 C+0 HETATM 12 C UNK 0 -0.605 3.740 0.000 0.00 0.00 C+0 HETATM 13 O UNK 0 -5.940 -2.420 0.000 0.00 0.00 O+0 HETATM 14 C UNK 0 -4.606 -3.190 0.000 0.00 0.00 C+0 HETATM 15 O UNK 0 -3.273 -0.880 0.000 0.00 0.00 O+0 HETATM 16 O UNK 0 -4.606 4.510 0.000 0.00 0.00 O+0 HETATM 17 O UNK 0 -1.939 6.050 0.000 0.00 0.00 O+0 HETATM 18 C UNK 0 -0.605 6.820 0.000 0.00 0.00 C+0 HETATM 19 O UNK 0 4.344 3.105 0.000 0.00 0.00 O+0 HETATM 20 C UNK 0 3.439 4.351 0.000 0.00 0.00 C+0 HETATM 21 C UNK 0 1.974 3.875 0.000 0.00 0.00 C+0 HETATM 22 C UNK 0 1.974 2.335 0.000 0.00 0.00 C+0 HETATM 23 C UNK 0 3.439 1.859 0.000 0.00 0.00 C+0 HETATM 24 O UNK 0 3.915 0.395 0.000 0.00 0.00 O+0 HETATM 25 C UNK 0 0.728 1.430 0.000 0.00 0.00 C+0 HETATM 26 C UNK 0 3.038 8.782 0.000 0.00 0.00 C+0 HETATM 27 C UNK 0 1.498 8.782 0.000 0.00 0.00 C+0 HETATM 28 C UNK 0 0.728 7.448 0.000 0.00 0.00 C+0 HETATM 29 C UNK 0 1.498 6.114 0.000 0.00 0.00 C+0 HETATM 30 C UNK 0 3.038 6.114 0.000 0.00 0.00 C+0 HETATM 31 C UNK 0 3.808 7.448 0.000 0.00 0.00 C+0 HETATM 32 O UNK 0 3.808 10.115 0.000 0.00 0.00 O+0 HETATM 33 C UNK 0 5.348 10.115 0.000 0.00 0.00 C+0 HETATM 34 O UNK 0 0.728 10.115 0.000 0.00 0.00 O+0 HETATM 35 C UNK 0 -0.812 10.115 0.000 0.00 0.00 C+0 HETATM 36 C UNK 0 0.728 4.780 0.000 0.00 0.00 C+0 HETATM 37 O UNK 0 -12.349 3.572 0.000 0.00 0.00 O+0 HETATM 38 C UNK 0 -12.589 2.051 0.000 0.00 0.00 C+0 HETATM 39 C UNK 0 -11.217 1.352 0.000 0.00 0.00 C+0 HETATM 40 C UNK 0 -10.128 2.441 0.000 0.00 0.00 C+0 HETATM 41 C UNK 0 -10.827 3.813 0.000 0.00 0.00 C+0 HETATM 42 O UNK 0 -10.128 5.185 0.000 0.00 0.00 O+0 HETATM 43 C UNK 0 -8.607 2.200 0.000 0.00 0.00 C+0 HETATM 44 C UNK 0 -15.439 -1.365 0.000 0.00 0.00 C+0 HETATM 45 C UNK 0 -14.350 -2.454 0.000 0.00 0.00 C+0 HETATM 46 C UNK 0 -12.863 -2.055 0.000 0.00 0.00 C+0 HETATM 47 C UNK 0 -12.464 -0.568 0.000 0.00 0.00 C+0 HETATM 48 C UNK 0 -13.553 0.521 0.000 0.00 0.00 C+0 HETATM 49 C UNK 0 -15.040 0.123 0.000 0.00 0.00 C+0 HETATM 50 O UNK 0 -16.927 -1.763 0.000 0.00 0.00 O+0 HETATM 51 C UNK 0 -18.016 -0.674 0.000 0.00 0.00 C+0 HETATM 52 O UNK 0 -14.749 -3.941 0.000 0.00 0.00 O+0 HETATM 53 C UNK 0 -13.660 -5.030 0.000 0.00 0.00 C+0 HETATM 54 C UNK 0 -10.976 -0.169 0.000 0.00 0.00 C+0 CONECT 1 2 6 CONECT 2 1 3 43 CONECT 3 2 4 CONECT 4 3 5 13 CONECT 5 4 6 15 CONECT 6 1 5 7 CONECT 7 6 9 10 CONECT 8 9 12 17 CONECT 9 7 8 16 CONECT 10 7 11 CONECT 11 10 12 25 CONECT 12 8 11 CONECT 13 4 14 CONECT 14 13 CONECT 15 5 CONECT 16 9 CONECT 17 8 18 CONECT 18 17 CONECT 19 20 23 CONECT 20 19 21 CONECT 21 20 22 36 CONECT 22 21 23 25 CONECT 23 19 22 24 CONECT 24 23 CONECT 25 11 22 CONECT 26 27 31 32 CONECT 27 26 28 34 CONECT 28 27 29 CONECT 29 28 30 36 CONECT 30 29 31 CONECT 31 26 30 CONECT 32 26 33 CONECT 33 32 CONECT 34 27 35 CONECT 35 34 CONECT 36 21 29 CONECT 37 38 41 CONECT 38 37 39 CONECT 39 38 40 54 CONECT 40 39 41 43 CONECT 41 37 40 42 CONECT 42 41 CONECT 43 2 40 CONECT 44 45 49 50 CONECT 45 44 46 52 CONECT 46 45 47 CONECT 47 46 48 54 CONECT 48 47 49 CONECT 49 44 48 CONECT 50 44 51 CONECT 51 50 CONECT 52 45 53 CONECT 53 52 CONECT 54 39 47 MASTER 0 0 0 0 0 0 0 0 54 0 118 0 END 3D PDB for HMDB0302059 (Diarctigenin)COMPND HMDB0302059 HETATM 1 C1 UNL 1 8.995 -2.271 -3.386 1.00 0.00 C HETATM 2 O1 UNL 1 9.574 -1.132 -2.777 1.00 0.00 O HETATM 3 C2 UNL 1 9.008 -0.688 -1.576 1.00 0.00 C HETATM 4 C3 UNL 1 7.931 -1.325 -1.000 1.00 0.00 C HETATM 5 C4 UNL 1 7.395 -0.859 0.189 1.00 0.00 C HETATM 6 C5 UNL 1 7.911 0.247 0.832 1.00 0.00 C HETATM 7 C6 UNL 1 7.313 0.704 2.082 1.00 0.00 C HETATM 8 C7 UNL 1 6.226 1.707 1.922 1.00 0.00 C HETATM 9 C8 UNL 1 6.683 2.981 1.228 1.00 0.00 C HETATM 10 O2 UNL 1 5.406 3.588 0.981 1.00 0.00 O HETATM 11 C9 UNL 1 4.511 2.563 0.608 1.00 0.00 C HETATM 12 O3 UNL 1 3.434 2.832 0.057 1.00 0.00 O HETATM 13 C10 UNL 1 5.113 1.267 0.990 1.00 0.00 C HETATM 14 C11 UNL 1 4.220 0.340 1.730 1.00 0.00 C HETATM 15 C12 UNL 1 3.076 -0.200 0.991 1.00 0.00 C HETATM 16 C13 UNL 1 3.228 -1.361 0.220 1.00 0.00 C HETATM 17 C14 UNL 1 2.177 -1.919 -0.464 1.00 0.00 C HETATM 18 O4 UNL 1 2.245 -3.051 -1.238 1.00 0.00 O HETATM 19 C15 UNL 1 3.386 -3.829 -1.465 1.00 0.00 C HETATM 20 C16 UNL 1 0.952 -1.276 -0.355 1.00 0.00 C HETATM 21 O5 UNL 1 -0.141 -1.816 -1.037 1.00 0.00 O HETATM 22 C17 UNL 1 0.767 -0.134 0.394 1.00 0.00 C HETATM 23 C18 UNL 1 -0.544 0.498 0.519 1.00 0.00 C HETATM 24 C19 UNL 1 -1.667 -0.256 0.844 1.00 0.00 C HETATM 25 C20 UNL 1 -2.926 0.288 1.018 1.00 0.00 C HETATM 26 C21 UNL 1 -4.043 -0.588 1.362 1.00 0.00 C HETATM 27 C22 UNL 1 -4.908 -1.062 0.259 1.00 0.00 C HETATM 28 C23 UNL 1 -4.171 -1.823 -0.767 1.00 0.00 C HETATM 29 O6 UNL 1 -3.142 -1.492 -1.368 1.00 0.00 O HETATM 30 O7 UNL 1 -4.804 -3.060 -1.016 1.00 0.00 O HETATM 31 C24 UNL 1 -6.066 -3.067 -0.328 1.00 0.00 C HETATM 32 C25 UNL 1 -5.782 -2.181 0.860 1.00 0.00 C HETATM 33 C26 UNL 1 -6.954 -1.649 1.568 1.00 0.00 C HETATM 34 C27 UNL 1 -7.884 -0.838 0.732 1.00 0.00 C HETATM 35 C28 UNL 1 -7.760 0.519 0.636 1.00 0.00 C HETATM 36 C29 UNL 1 -8.635 1.230 -0.144 1.00 0.00 C HETATM 37 C30 UNL 1 -9.651 0.622 -0.846 1.00 0.00 C HETATM 38 O8 UNL 1 -10.555 1.308 -1.642 1.00 0.00 O HETATM 39 C31 UNL 1 -10.470 2.712 -1.769 1.00 0.00 C HETATM 40 C32 UNL 1 -9.751 -0.765 -0.727 1.00 0.00 C HETATM 41 O9 UNL 1 -10.759 -1.423 -1.415 1.00 0.00 O HETATM 42 C33 UNL 1 -10.877 -2.826 -1.304 1.00 0.00 C HETATM 43 C34 UNL 1 -8.880 -1.487 0.051 1.00 0.00 C HETATM 44 C35 UNL 1 -3.041 1.656 0.851 1.00 0.00 C HETATM 45 C36 UNL 1 -1.959 2.441 0.529 1.00 0.00 C HETATM 46 O10 UNL 1 -2.085 3.812 0.362 1.00 0.00 O HETATM 47 C37 UNL 1 -3.335 4.452 0.518 1.00 0.00 C HETATM 48 C38 UNL 1 -0.700 1.858 0.361 1.00 0.00 C HETATM 49 O11 UNL 1 0.380 2.657 0.036 1.00 0.00 O HETATM 50 C39 UNL 1 1.844 0.408 1.072 1.00 0.00 C HETATM 51 C40 UNL 1 8.985 0.870 0.242 1.00 0.00 C HETATM 52 C41 UNL 1 9.542 0.431 -0.939 1.00 0.00 C HETATM 53 O12 UNL 1 10.629 1.046 -1.553 1.00 0.00 O HETATM 54 C42 UNL 1 11.201 2.186 -0.940 1.00 0.00 C HETATM 55 H1 UNL 1 7.933 -2.082 -3.694 1.00 0.00 H HETATM 56 H2 UNL 1 9.565 -2.592 -4.282 1.00 0.00 H HETATM 57 H3 UNL 1 8.988 -3.143 -2.679 1.00 0.00 H HETATM 58 H4 UNL 1 7.545 -2.186 -1.525 1.00 0.00 H HETATM 59 H5 UNL 1 6.551 -1.396 0.598 1.00 0.00 H HETATM 60 H6 UNL 1 8.118 1.205 2.690 1.00 0.00 H HETATM 61 H7 UNL 1 6.956 -0.120 2.734 1.00 0.00 H HETATM 62 H8 UNL 1 5.775 1.987 2.872 1.00 0.00 H HETATM 63 H9 UNL 1 7.228 2.772 0.294 1.00 0.00 H HETATM 64 H10 UNL 1 7.210 3.651 1.930 1.00 0.00 H HETATM 65 H11 UNL 1 5.595 0.813 0.099 1.00 0.00 H HETATM 66 H12 UNL 1 4.860 -0.454 2.179 1.00 0.00 H HETATM 67 H13 UNL 1 3.818 0.905 2.611 1.00 0.00 H HETATM 68 H14 UNL 1 4.190 -1.846 0.152 1.00 0.00 H HETATM 69 H15 UNL 1 3.109 -4.611 -2.211 1.00 0.00 H HETATM 70 H16 UNL 1 4.192 -3.162 -1.835 1.00 0.00 H HETATM 71 H17 UNL 1 3.702 -4.396 -0.552 1.00 0.00 H HETATM 72 H18 UNL 1 -0.080 -2.644 -1.599 1.00 0.00 H HETATM 73 H19 UNL 1 -1.494 -1.323 0.955 1.00 0.00 H HETATM 74 H20 UNL 1 -4.664 -0.150 2.202 1.00 0.00 H HETATM 75 H21 UNL 1 -3.610 -1.517 1.847 1.00 0.00 H HETATM 76 H22 UNL 1 -5.595 -0.316 -0.175 1.00 0.00 H HETATM 77 H23 UNL 1 -6.319 -4.108 -0.047 1.00 0.00 H HETATM 78 H24 UNL 1 -6.781 -2.615 -1.042 1.00 0.00 H HETATM 79 H25 UNL 1 -5.167 -2.768 1.576 1.00 0.00 H HETATM 80 H26 UNL 1 -6.585 -0.973 2.382 1.00 0.00 H HETATM 81 H27 UNL 1 -7.506 -2.452 2.089 1.00 0.00 H HETATM 82 H28 UNL 1 -6.972 1.063 1.178 1.00 0.00 H HETATM 83 H29 UNL 1 -8.567 2.324 -0.251 1.00 0.00 H HETATM 84 H30 UNL 1 -11.407 3.099 -2.220 1.00 0.00 H HETATM 85 H31 UNL 1 -10.359 3.148 -0.740 1.00 0.00 H HETATM 86 H32 UNL 1 -9.562 2.978 -2.332 1.00 0.00 H HETATM 87 H33 UNL 1 -11.731 -3.124 -1.968 1.00 0.00 H HETATM 88 H34 UNL 1 -9.990 -3.366 -1.689 1.00 0.00 H HETATM 89 H35 UNL 1 -11.109 -3.081 -0.248 1.00 0.00 H HETATM 90 H36 UNL 1 -8.983 -2.589 0.129 1.00 0.00 H HETATM 91 H37 UNL 1 -3.993 2.116 0.975 1.00 0.00 H HETATM 92 H38 UNL 1 -3.188 5.512 0.255 1.00 0.00 H HETATM 93 H39 UNL 1 -4.029 3.984 -0.214 1.00 0.00 H HETATM 94 H40 UNL 1 -3.669 4.297 1.568 1.00 0.00 H HETATM 95 H41 UNL 1 0.229 3.648 -0.071 1.00 0.00 H HETATM 96 H42 UNL 1 1.655 1.304 1.647 1.00 0.00 H HETATM 97 H43 UNL 1 9.435 1.755 0.712 1.00 0.00 H HETATM 98 H44 UNL 1 12.163 2.476 -1.448 1.00 0.00 H HETATM 99 H45 UNL 1 11.362 2.044 0.132 1.00 0.00 H HETATM 100 H46 UNL 1 10.539 3.086 -1.056 1.00 0.00 H CONECT 1 2 55 56 57 CONECT 2 3 CONECT 3 4 4 52 CONECT 4 5 58 CONECT 5 6 6 59 CONECT 6 7 51 CONECT 7 8 60 61 CONECT 8 9 13 62 CONECT 9 10 63 64 CONECT 10 11 CONECT 11 12 12 13 CONECT 13 14 65 CONECT 14 15 66 67 CONECT 15 16 16 50 CONECT 16 17 68 CONECT 17 18 20 20 CONECT 18 19 CONECT 19 69 70 71 CONECT 20 21 22 CONECT 21 72 CONECT 22 23 50 50 CONECT 23 24 24 48 CONECT 24 25 73 CONECT 25 26 44 44 CONECT 26 27 74 75 CONECT 27 28 32 76 CONECT 28 29 29 30 CONECT 30 31 CONECT 31 32 77 78 CONECT 32 33 79 CONECT 33 34 80 81 CONECT 34 35 35 43 CONECT 35 36 82 CONECT 36 37 37 83 CONECT 37 38 40 CONECT 38 39 CONECT 39 84 85 86 CONECT 40 41 43 43 CONECT 41 42 CONECT 42 87 88 89 CONECT 43 90 CONECT 44 45 91 CONECT 45 46 48 48 CONECT 46 47 CONECT 47 92 93 94 CONECT 48 49 CONECT 49 95 CONECT 50 96 CONECT 51 52 52 97 CONECT 52 53 CONECT 53 54 CONECT 54 98 99 100 END SMILES for HMDB0302059 (Diarctigenin)COC1=CC(C[C@@H]2[C@@H](CC3=CC(OC)=C(OC)C=C3)COC2=O)=CC(=C1O)C1=C(O)C(OC)=CC(C[C@@H]2[C@@H](CC3=CC(OC)=C(OC)C=C3)COC2=O)=C1 INCHI for HMDB0302059 (Diarctigenin)InChI=1S/C42H46O12/c1-47-33-9-7-23(17-35(33)49-3)11-27-21-53-41(45)29(27)13-25-15-31(39(43)37(19-25)51-5)32-16-26(20-38(52-6)40(32)44)14-30-28(22-54-42(30)46)12-24-8-10-34(48-2)36(18-24)50-4/h7-10,15-20,27-30,43-44H,11-14,21-22H2,1-6H3/t27-,28-,29+,30+/m0/s1 3D Structure for HMDB0302059 (Diarctigenin) | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Synonyms | Not Available | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Chemical Formula | C42H46O12 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Average Molecular Weight | 742.8074 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Monoisotopic Molecular Weight | 742.298926936 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
IUPAC Name | (3R,4R)-4-[(3,4-dimethoxyphenyl)methyl]-3-{[3-(5-{[(3R,4R)-4-[(3,4-dimethoxyphenyl)methyl]-2-oxooxolan-3-yl]methyl}-2-hydroxy-3-methoxyphenyl)-4-hydroxy-5-methoxyphenyl]methyl}oxolan-2-one | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Traditional Name | (3R,4R)-4-[(3,4-dimethoxyphenyl)methyl]-3-{[3-(5-{[(3R,4R)-4-[(3,4-dimethoxyphenyl)methyl]-2-oxooxolan-3-yl]methyl}-2-hydroxy-3-methoxyphenyl)-4-hydroxy-5-methoxyphenyl]methyl}oxolan-2-one | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
CAS Registry Number | Not Available | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
SMILES | COC1=CC(C[C@@H]2[C@@H](CC3=CC(OC)=C(OC)C=C3)COC2=O)=CC(=C1O)C1=C(O)C(OC)=CC(C[C@@H]2[C@@H](CC3=CC(OC)=C(OC)C=C3)COC2=O)=C1 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
InChI Identifier | InChI=1S/C42H46O12/c1-47-33-9-7-23(17-35(33)49-3)11-27-21-53-41(45)29(27)13-25-15-31(39(43)37(19-25)51-5)32-16-26(20-38(52-6)40(32)44)14-30-28(22-54-42(30)46)12-24-8-10-34(48-2)36(18-24)50-4/h7-10,15-20,27-30,43-44H,11-14,21-22H2,1-6H3/t27-,28-,29+,30+/m0/s1 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
InChI Key | XYMRYKOVQDOJFH-VZNYXHRGSA-N | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Chemical Taxonomy | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Description | Belongs to the class of organic compounds known as dibenzylbutyrolactone lignans. These are lignan compounds containing a 3,4-dibenzyloxolan-2-one moiety. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Kingdom | Organic compounds | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Super Class | Lignans, neolignans and related compounds | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Class | Furanoid lignans | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sub Class | Tetrahydrofuran lignans | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Direct Parent | Dibenzylbutyrolactone lignans | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Alternative Parents |
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Substituents |
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Molecular Framework | Aromatic heteromonocyclic compounds | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
External Descriptors | Not Available | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Ontology | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Physiological effect | Not Available | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Disposition | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Process | Not Available | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Role | Not Available | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Physical Properties | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
State | Not Available | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Experimental Molecular Properties |
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Experimental Chromatographic Properties | Not Available | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Predicted Molecular Properties |
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Predicted Chromatographic Properties | Predicted Collision Cross Sections
Predicted Kovats Retention IndicesNot Available | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Spectra | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
MS/MS Spectra
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Biological Properties | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Cellular Locations | Not Available | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Biospecimen Locations | Not Available | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Tissue Locations | Not Available | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Pathways |
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Normal Concentrations | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Not Available | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Abnormal Concentrations | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Not Available | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Associated Disorders and Diseases | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Disease References | None | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Associated OMIM IDs | None | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
External Links | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
DrugBank ID | Not Available | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Phenol Explorer Compound ID | Not Available | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
FooDB ID | FDB001807 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
KNApSAcK ID | Not Available | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Chemspider ID | 17343375 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
KEGG Compound ID | Not Available | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
BioCyc ID | Not Available | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
BiGG ID | Not Available | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Wikipedia Link | Not Available | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
METLIN ID | Not Available | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
PubChem Compound | 16215736 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
PDB ID | Not Available | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
ChEBI ID | Not Available | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Food Biomarker Ontology | Not Available | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
VMH ID | Not Available | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
MarkerDB ID | Not Available | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Good Scents ID | Not Available | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
References | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Synthesis Reference | Not Available | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Material Safety Data Sheet (MSDS) | Not Available | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
General References | Not Available |