Hmdb loader
Record Information
Version5.0
StatusExpected but not Quantified
Creation Date2021-09-23 17:03:00 UTC
Update Date2021-09-23 17:03:00 UTC
HMDB IDHMDB0302342
Secondary Accession NumbersNone
Metabolite Identification
Common NameApigenin 6-C-glucosyl-O-arabinoside
Description6-[(3R,4R,5S,6R)-6-({[(2R,3S,4S,5R)-3,4-dihydroxy-5-(hydroxymethyl)oxolan-2-yl]oxy}methyl)-3,4,5-trihydroxyoxan-2-yl]-5,7-dihydroxy-2-(4-hydroxyphenyl)-4H-chromen-4-one belongs to the class of organic compounds known as flavonoid c-glycosides. Flavonoid C-glycosides are compounds containing a carbohydrate moiety which is C-glycosidically linked to the 2-phenylchromen-4-one flavonoid backbone. Based on a literature review very few articles have been published on 6-[(3R,4R,5S,6R)-6-({[(2R,3S,4S,5R)-3,4-dihydroxy-5-(hydroxymethyl)oxolan-2-yl]oxy}methyl)-3,4,5-trihydroxyoxan-2-yl]-5,7-dihydroxy-2-(4-hydroxyphenyl)-4H-chromen-4-one.
Structure
Thumb
SynonymsNot Available
Chemical FormulaC26H28O14
Average Molecular Weight564.4921
Monoisotopic Molecular Weight564.147905604
IUPAC Name6-[(3R,4R,5S,6R)-6-({[(2R,3S,4S,5R)-3,4-dihydroxy-5-(hydroxymethyl)oxolan-2-yl]oxy}methyl)-3,4,5-trihydroxyoxan-2-yl]-5,7-dihydroxy-2-(4-hydroxyphenyl)-4H-chromen-4-one
Traditional Name6-[(3R,4R,5S,6R)-6-({[(2R,3S,4S,5R)-3,4-dihydroxy-5-(hydroxymethyl)oxolan-2-yl]oxy}methyl)-3,4,5-trihydroxyoxan-2-yl]-5,7-dihydroxy-2-(4-hydroxyphenyl)chromen-4-one
CAS Registry NumberNot Available
SMILES
OC[C@H]1O[C@@H](OC[C@H]2OC([C@H](O)[C@@H](O)[C@@H]2O)C2=C(O)C3=C(OC(=CC3=O)C3=CC=C(O)C=C3)C=C2O)[C@@H](O)[C@@H]1O
InChI Identifier
InChI=1S/C26H28O14/c27-7-15-19(31)24(36)26(40-15)37-8-16-20(32)22(34)23(35)25(39-16)18-12(30)6-14-17(21(18)33)11(29)5-13(38-14)9-1-3-10(28)4-2-9/h1-6,15-16,19-20,22-28,30-36H,7-8H2/t15-,16-,19-,20-,22+,23-,24+,25?,26-/m1/s1
InChI KeyFIOWCFBQOIGQDV-NXGDVTQMSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as flavonoid c-glycosides. Flavonoid C-glycosides are compounds containing a carbohydrate moiety which is C-glycosidically linked to the 2-phenylchromen-4-one flavonoid backbone.
KingdomOrganic compounds
Super ClassPhenylpropanoids and polyketides
ClassFlavonoids
Sub ClassFlavonoid glycosides
Direct ParentFlavonoid C-glycosides
Alternative Parents
Substituents
  • Flavonoid c-glycoside
  • Hydroxyflavonoid
  • 4'-hydroxyflavonoid
  • 5-hydroxyflavonoid
  • 7-hydroxyflavonoid
  • Flavone
  • Phenolic glycoside
  • O-glycosyl compound
  • Glycosyl compound
  • Disaccharide
  • Chromone
  • C-glycosyl compound
  • 1-benzopyran
  • Benzopyran
  • 1-hydroxy-2-unsubstituted benzenoid
  • Pyranone
  • 1-hydroxy-4-unsubstituted benzenoid
  • Phenol
  • Monocyclic benzene moiety
  • Benzenoid
  • Pyran
  • Oxane
  • Heteroaromatic compound
  • Tetrahydrofuran
  • Vinylogous acid
  • Secondary alcohol
  • Polyol
  • Acetal
  • Oxacycle
  • Organoheterocyclic compound
  • Dialkyl ether
  • Ether
  • Organic oxygen compound
  • Hydrocarbon derivative
  • Organooxygen compound
  • Primary alcohol
  • Alcohol
  • Organic oxide
  • Aromatic heteropolycyclic compound
Molecular FrameworkAromatic heteropolycyclic compounds
External DescriptorsNot Available
Ontology
Physiological effectNot Available
Disposition
ProcessNot Available
RoleNot Available
Physical Properties
StateNot Available
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
logP-0.28ALOGPS
logP-1.2ChemAxon
logS-2.3ALOGPS
pKa (Strongest Acidic)6.2ChemAxon
pKa (Strongest Basic)-3.6ChemAxon
Physiological Charge-1ChemAxon
Hydrogen Acceptor Count14ChemAxon
Hydrogen Donor Count9ChemAxon
Polar Surface Area236.06 ŲChemAxon
Rotatable Bond Count6ChemAxon
Refractivity132.48 m³·mol⁻¹ChemAxon
Polarizability54.88 ųChemAxon
Number of Rings5ChemAxon
BioavailabilityNoChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleYesChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
AllCCS[M+H]+228.86732859911
AllCCS[M+H-H2O]+227.25532859911
AllCCS[M+Na]+230.74532859911
AllCCS[M+NH4]+230.3332859911
AllCCS[M-H]-225.64632859911
AllCCS[M+Na-2H]-227.85432859911
AllCCS[M+HCOO]-230.42932859911
DeepCCS[M+H]+213.79830932474
DeepCCS[M-H]-211.90130932474
DeepCCS[M-2H]-245.72230932474
DeepCCS[M+Na]+219.70630932474

Predicted Kovats Retention Indices

Derivatized

Derivative Name / StructureSMILESKovats RI ValueColumn TypeReference
Apigenin 6-C-glucosyl-O-arabinoside,4TMS,isomer #65C[Si](C)(C)OC1=CC2=C(C(O[Si](C)(C)C)=C1C1O[C@H](CO[C@@H]3O[C@H](CO)[C@@H](O)[C@@H]3O)[C@@H](O)[C@H](O[Si](C)(C)C)[C@H]1O[Si](C)(C)C)C(=O)C=C(C1=CC=C(O)C=C1)O24643.2Semi standard non polar33892256
Apigenin 6-C-glucosyl-O-arabinoside,4TMS,isomer #65C[Si](C)(C)OC1=CC2=C(C(O[Si](C)(C)C)=C1C1O[C@H](CO[C@@H]3O[C@H](CO)[C@@H](O)[C@@H]3O)[C@@H](O)[C@H](O[Si](C)(C)C)[C@H]1O[Si](C)(C)C)C(=O)C=C(C1=CC=C(O)C=C1)O24507.9Standard non polar33892256
Apigenin 6-C-glucosyl-O-arabinoside,4TMS,isomer #65C[Si](C)(C)OC1=CC2=C(C(O[Si](C)(C)C)=C1C1O[C@H](CO[C@@H]3O[C@H](CO)[C@@H](O)[C@@H]3O)[C@@H](O)[C@H](O[Si](C)(C)C)[C@H]1O[Si](C)(C)C)C(=O)C=C(C1=CC=C(O)C=C1)O26162.9Standard polar33892256
Apigenin 6-C-glucosyl-O-arabinoside,4TMS,isomer #86C[Si](C)(C)OC1=C(C2O[C@H](CO[C@@H]3O[C@H](CO)[C@@H](O)[C@@H]3O[Si](C)(C)C)[C@@H](O)[C@H](O[Si](C)(C)C)[C@H]2O[Si](C)(C)C)C(O)=CC2=C1C(=O)C=C(C1=CC=C(O)C=C1)O24660.2Semi standard non polar33892256
Apigenin 6-C-glucosyl-O-arabinoside,4TMS,isomer #86C[Si](C)(C)OC1=C(C2O[C@H](CO[C@@H]3O[C@H](CO)[C@@H](O)[C@@H]3O[Si](C)(C)C)[C@@H](O)[C@H](O[Si](C)(C)C)[C@H]2O[Si](C)(C)C)C(O)=CC2=C1C(=O)C=C(C1=CC=C(O)C=C1)O24575.3Standard non polar33892256
Apigenin 6-C-glucosyl-O-arabinoside,4TMS,isomer #86C[Si](C)(C)OC1=C(C2O[C@H](CO[C@@H]3O[C@H](CO)[C@@H](O)[C@@H]3O[Si](C)(C)C)[C@@H](O)[C@H](O[Si](C)(C)C)[C@H]2O[Si](C)(C)C)C(O)=CC2=C1C(=O)C=C(C1=CC=C(O)C=C1)O26147.6Standard polar33892256
Spectra

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Apigenin 6-C-glucosyl-O-arabinoside 10V, Positive-QTOFsplash10-014j-1100290000-43d4a45454fad7a6e04b2016-08-02Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Apigenin 6-C-glucosyl-O-arabinoside 20V, Positive-QTOFsplash10-0159-2510940000-2b59bd67989f22a3e71a2016-08-02Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Apigenin 6-C-glucosyl-O-arabinoside 40V, Positive-QTOFsplash10-0002-5493110000-180b1669b7c3915a43592016-08-02Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Apigenin 6-C-glucosyl-O-arabinoside 10V, Negative-QTOFsplash10-03dj-2311290000-42af9918a75b7cc706ea2016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Apigenin 6-C-glucosyl-O-arabinoside 20V, Negative-QTOFsplash10-001j-1921020000-32bc599e45eb892054fe2016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Apigenin 6-C-glucosyl-O-arabinoside 40V, Negative-QTOFsplash10-0537-7932000000-e2703bf6986c5b67f12e2016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Apigenin 6-C-glucosyl-O-arabinoside 10V, Positive-QTOFsplash10-014i-0000090000-2b44d7c7097dece6794d2021-10-21Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Apigenin 6-C-glucosyl-O-arabinoside 20V, Positive-QTOFsplash10-014i-0000090000-2b44d7c7097dece6794d2021-10-21Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Apigenin 6-C-glucosyl-O-arabinoside 40V, Positive-QTOFsplash10-014j-0300950000-197ae5185fdeb4e04b5b2021-10-21Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Apigenin 6-C-glucosyl-O-arabinoside 10V, Negative-QTOFsplash10-03di-0000090000-7dac33c1867ebf2369b92021-10-21Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Apigenin 6-C-glucosyl-O-arabinoside 20V, Negative-QTOFsplash10-03di-0000090000-5d8a4e28f213bae4d1382021-10-21Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Apigenin 6-C-glucosyl-O-arabinoside 40V, Negative-QTOFsplash10-0a4j-0900630000-d29e083ca2321a32cc9a2021-10-21Wishart LabView Spectrum
Biological Properties
Cellular LocationsNot Available
Biospecimen LocationsNot Available
Tissue LocationsNot Available
Pathways
Normal Concentrations
Not Available
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDFDB004202
KNApSAcK IDNot Available
Chemspider ID59696319
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem CompoundNot Available
PDB IDNot Available
ChEBI IDNot Available
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General ReferencesNot Available