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Record Information

Version

5.0

Status

Expected but not Quantified

Creation Date

2021-09-23 23:21:04 UTC

Update Date

2021-09-23 23:21:04 UTC

HMDB ID

HMDB0303104

Secondary Accession Numbers

None

Metabolite Identification

Common Name

cis-Selinen-4-ol

Description

Cis-selinen-4-ol is a member of the class of compounds known as eudesmane, isoeudesmane or cycloeudesmane sesquiterpenoids. Eudesmane, isoeudesmane or cycloeudesmane sesquiterpenoids are sesquiterpenoids with a structure based on the eudesmane skeleton. Cis-selinen-4-ol is practically insoluble (in water) and an extremely weak basic (essentially neutral) compound (based on its pKa). Cis-selinen-4-ol can be found in ginger, which makes cis-selinen-4-ol a potential biomarker for the consumption of this food product.

Structure

MOL 3D MOL SDF 3D SDF PDB 3D PDB SMILES InChI

HMDB0303104
     RDKit          3D
cis-Selinen-4-ol
 42 43  0  0  0  0  0  0  0  0999 V2000
    3.1846    1.5063   -0.9128 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1368    0.3635   -0.2524 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.4342   -0.3983   -0.1213 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8820   -0.1344    0.3200 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.5675   -1.5479   -0.0995 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2594   -2.0055    0.5100 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8684   -1.0741    0.0453 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.9365   -1.1826   -1.4317 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1682   -1.5083    0.6783 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2710   -0.6243    0.2263 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9048    0.7917   -0.0383 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6376    1.2592    0.5839 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.1992    2.5152   -0.1815 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9521    1.7299    1.8818 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5287    0.2693    0.5985 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.7773    0.8272    0.0202 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3344    2.1493   -1.0803 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.1205    1.8458   -1.3236 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.4136   -1.0882    0.7337 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.5881   -0.9030   -1.0950 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.2284    0.3670    0.0672 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.0236   -0.1590    1.4391 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3598   -2.1975    0.3414 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.5820   -1.6985   -1.1845 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.0674   -3.0338    0.2032 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3361   -1.8636    1.6081 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9838   -1.0473   -1.8348 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7084   -2.2609   -1.6925 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2122   -0.5937   -1.9985 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0485   -1.4098    1.7926 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4081   -2.5646    0.4715 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1150   -0.7201    0.9703 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7026   -1.0658   -0.7195 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7433    1.4299    0.3740 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9113    1.0508   -1.1385 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8652    2.2925   -1.1940 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5123    3.1375    0.4177 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1386    3.1258   -0.2860 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8855    1.5937    2.1086 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2673    0.0876    1.6865 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.9844    1.7619    0.5800 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.6884    0.9772   -1.0736 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  3
  2  3  1  0
  2  4  1  0
  4  5  1  0
  5  6  1  0
  6  7  1  0
  7  8  1  6
  7  9  1  0
  9 10  1  0
 10 11  1  0
 11 12  1  0
 12 13  1  0
 12 14  1  1
 12 15  1  0
 15 16  1  0
 16  4  1  0
 15  7  1  0
  1 17  1  0
  1 18  1  0
  3 19  1  0
  3 20  1  0
  3 21  1  0
  4 22  1  1
  5 23  1  0
  5 24  1  0
  6 25  1  0
  6 26  1  0
  8 27  1  0
  8 28  1  0
  8 29  1  0
  9 30  1  0
  9 31  1  0
 10 32  1  0
 10 33  1  0
 11 34  1  0
 11 35  1  0
 13 36  1  0
 13 37  1  0
 13 38  1  0
 14 39  1  0
 15 40  1  1
 16 41  1  0
 16 42  1  0
M  END

  Mrv1533007131513492D          

 18 19  0  0  1  0            999 V2000
    5.0013   -1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.7158   -0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579    1.6500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6737   -1.0445    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2868    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434    1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5724    1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5724   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0013   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2868    0.0000    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.8579    0.0000    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.8579    0.8250    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.1434   -0.4125    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.6131   -1.0445    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.2868   -0.8250    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.5724    0.4125    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
  7  5  1  0  0  0  0
  8  5  1  0  0  0  0
  9  6  1  0  0  0  0
 11  1  2  0  0  0  0
 11  2  1  0  0  0  0
 12  6  1  0  0  0  0
 12 10  1  0  0  0  0
 12 11  1  1  0  0  0
 13 10  1  0  0  0  0
 14  3  1  1  0  0  0
 14  7  1  0  0  0  0
 14  9  1  0  0  0  0
 14 13  1  0  0  0  0
 15  4  1  1  0  0  0
 15  8  1  0  0  0  0
 15 13  1  0  0  0  0
 15 16  1  6  0  0  0
 12 17  1  6  0  0  0
 13 18  1  6  0  0  0
M  END
> <DATABASE_ID>
HMDB0303104

> <DATABASE_NAME>
hmdb

> <SMILES>
[H][C@]1(CC[C@@]2(C)CCC[C@@](C)(O)[C@]2([H])C1)C(C)=C

> <INCHI_IDENTIFIER>
InChI=1S/C15H26O/c1-11(2)12-6-9-14(3)7-5-8-15(4,16)13(14)10-12/h12-13,16H,1,5-10H2,2-4H3/t12-,13-,14-,15-/m1/s1

> <INCHI_KEY>
DPQYOKVMVCQHMY-KBUPBQIOSA-N

> <FORMULA>
C15H26O

> <MOLECULAR_WEIGHT>
222.372

> <EXACT_MASS>
222.198365457

> <JCHEM_ACCEPTOR_COUNT>
1

> <JCHEM_ATOM_COUNT>
42

> <JCHEM_AVERAGE_POLARIZABILITY>
27.451822374536874

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
1

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(1R,4aR,7R,8aR)-1,4a-dimethyl-7-(prop-1-en-2-yl)-decahydronaphthalen-1-ol

> <ALOGPS_LOGP>
4.04

> <JCHEM_LOGP>
3.6096816480000014

> <ALOGPS_LOGS>
-4.40

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
2

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA_STRONGEST_BASIC>
-0.4615436652577537

> <JCHEM_POLAR_SURFACE_AREA>
20.23

> <JCHEM_REFRACTIVITY>
68.2845

> <JCHEM_ROTATABLE_BOND_COUNT>
1

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
8.79e-03 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(1R,4aR,7R,8aR)-1,4a-dimethyl-7-(prop-1-en-2-yl)-octahydronaphthalen-1-ol

> <JCHEM_VEBER_RULE>
1

$$$$

HMDB0303104
     RDKit          3D
cis-Selinen-4-ol
 42 43  0  0  0  0  0  0  0  0999 V2000
    3.1846    1.5063   -0.9128 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1368    0.3635   -0.2524 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.4342   -0.3983   -0.1213 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8820   -0.1344    0.3200 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.5675   -1.5479   -0.0995 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2594   -2.0055    0.5100 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8684   -1.0741    0.0453 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.9365   -1.1826   -1.4317 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1682   -1.5083    0.6783 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2710   -0.6243    0.2263 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9048    0.7917   -0.0383 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6376    1.2592    0.5839 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.1992    2.5152   -0.1815 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9521    1.7299    1.8818 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5287    0.2693    0.5985 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.7773    0.8272    0.0202 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3344    2.1493   -1.0803 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.1205    1.8458   -1.3236 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.4136   -1.0882    0.7337 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.5881   -0.9030   -1.0950 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.2284    0.3670    0.0672 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.0236   -0.1590    1.4391 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3598   -2.1975    0.3414 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.5820   -1.6985   -1.1845 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.0674   -3.0338    0.2032 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3361   -1.8636    1.6081 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9838   -1.0473   -1.8348 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7084   -2.2609   -1.6925 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2122   -0.5937   -1.9985 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0485   -1.4098    1.7926 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4081   -2.5646    0.4715 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1150   -0.7201    0.9703 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7026   -1.0658   -0.7195 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7433    1.4299    0.3740 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9113    1.0508   -1.1385 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8652    2.2925   -1.1940 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5123    3.1375    0.4177 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1386    3.1258   -0.2860 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8855    1.5937    2.1086 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2673    0.0876    1.6865 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.9844    1.7619    0.5800 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.6884    0.9772   -1.0736 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  3
  2  3  1  0
  2  4  1  0
  4  5  1  0
  5  6  1  0
  6  7  1  0
  7  8  1  6
  7  9  1  0
  9 10  1  0
 10 11  1  0
 11 12  1  0
 12 13  1  0
 12 14  1  1
 12 15  1  0
 15 16  1  0
 16  4  1  0
 15  7  1  0
  1 17  1  0
  1 18  1  0
  3 19  1  0
  3 20  1  0
  3 21  1  0
  4 22  1  1
  5 23  1  0
  5 24  1  0
  6 25  1  0
  6 26  1  0
  8 27  1  0
  8 28  1  0
  8 29  1  0
  9 30  1  0
  9 31  1  0
 10 32  1  0
 10 33  1  0
 11 34  1  0
 11 35  1  0
 13 36  1  0
 13 37  1  0
 13 38  1  0
 14 39  1  0
 15 40  1  1
 16 41  1  0
 16 42  1  0
M  END

HEADER    PROTEIN                                 13-JUL-15   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   13-JUL-15         0                                  
HETATM    1  C   UNK     0       9.336  -2.310   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      10.669  -0.000   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       5.335   3.080   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       4.991  -1.950   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       2.667   1.540   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       8.002   1.540   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       4.001   2.310   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       2.667   0.000   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       6.668   2.310   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       6.668  -0.770   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       9.336  -0.770   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       8.002   0.000   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       5.335   0.000   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       5.335   1.540   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       4.001  -0.770   0.000  0.00  0.00           C+0
HETATM   16  O   UNK     0       3.011  -1.950   0.000  0.00  0.00           O+0
HETATM   17  H   UNK     0       8.002  -1.540   0.000  0.00  0.00           H+0
HETATM   18  H   UNK     0       6.668   0.770   0.000  0.00  0.00           H+0
CONECT    1   11                                                            
CONECT    2   11                                                            
CONECT    3   14                                                            
CONECT    4   15                                                            
CONECT    5    7    8                                                       
CONECT    6    9   12                                                       
CONECT    7    5   14                                                       
CONECT    8    5   15                                                       
CONECT    9    6   14                                                       
CONECT   10   12   13                                                       
CONECT   11    1    2   12                                                  
CONECT   12    6   10   11   17                                             
CONECT   13   10   14   15   18                                             
CONECT   14    3    7    9   13                                             
CONECT   15    4    8   13   16                                             
CONECT   16   15                                                            
CONECT   17   12                                                            
CONECT   18   13                                                            
MASTER        0    0    0    0    0    0    0    0   18    0   38    0
END

COMPND    HMDB0303104
HETATM    1  C1  UNL     1       3.185   1.506  -0.913  1.00  0.00           C  
HETATM    2  C2  UNL     1       3.137   0.363  -0.252  1.00  0.00           C  
HETATM    3  C3  UNL     1       4.434  -0.398  -0.121  1.00  0.00           C  
HETATM    4  C4  UNL     1       1.882  -0.134   0.320  1.00  0.00           C  
HETATM    5  C5  UNL     1       1.567  -1.548  -0.099  1.00  0.00           C  
HETATM    6  C6  UNL     1       0.259  -2.006   0.510  1.00  0.00           C  
HETATM    7  C7  UNL     1      -0.868  -1.074   0.045  1.00  0.00           C  
HETATM    8  C8  UNL     1      -0.936  -1.183  -1.432  1.00  0.00           C  
HETATM    9  C9  UNL     1      -2.168  -1.508   0.678  1.00  0.00           C  
HETATM   10  C10 UNL     1      -3.271  -0.624   0.226  1.00  0.00           C  
HETATM   11  C11 UNL     1      -2.905   0.792  -0.038  1.00  0.00           C  
HETATM   12  C12 UNL     1      -1.638   1.259   0.584  1.00  0.00           C  
HETATM   13  C13 UNL     1      -1.199   2.515  -0.182  1.00  0.00           C  
HETATM   14  O1  UNL     1      -1.952   1.730   1.882  1.00  0.00           O  
HETATM   15  C14 UNL     1      -0.529   0.269   0.599  1.00  0.00           C  
HETATM   16  C15 UNL     1       0.777   0.827   0.020  1.00  0.00           C  
HETATM   17  H1  UNL     1       2.334   2.149  -1.080  1.00  0.00           H  
HETATM   18  H2  UNL     1       4.121   1.846  -1.324  1.00  0.00           H  
HETATM   19  H3  UNL     1       4.414  -1.088   0.734  1.00  0.00           H  
HETATM   20  H4  UNL     1       4.588  -0.903  -1.095  1.00  0.00           H  
HETATM   21  H5  UNL     1       5.228   0.367   0.067  1.00  0.00           H  
HETATM   22  H6  UNL     1       2.024  -0.159   1.439  1.00  0.00           H  
HETATM   23  H7  UNL     1       2.360  -2.198   0.341  1.00  0.00           H  
HETATM   24  H8  UNL     1       1.582  -1.698  -1.184  1.00  0.00           H  
HETATM   25  H9  UNL     1       0.067  -3.034   0.203  1.00  0.00           H  
HETATM   26  H10 UNL     1       0.336  -1.864   1.608  1.00  0.00           H  
HETATM   27  H11 UNL     1      -1.984  -1.047  -1.835  1.00  0.00           H  
HETATM   28  H12 UNL     1      -0.708  -2.261  -1.693  1.00  0.00           H  
HETATM   29  H13 UNL     1      -0.212  -0.594  -1.998  1.00  0.00           H  
HETATM   30  H14 UNL     1      -2.048  -1.410   1.793  1.00  0.00           H  
HETATM   31  H15 UNL     1      -2.408  -2.565   0.471  1.00  0.00           H  
HETATM   32  H16 UNL     1      -4.115  -0.720   0.970  1.00  0.00           H  
HETATM   33  H17 UNL     1      -3.703  -1.066  -0.719  1.00  0.00           H  
HETATM   34  H18 UNL     1      -3.743   1.430   0.374  1.00  0.00           H  
HETATM   35  H19 UNL     1      -2.911   1.051  -1.139  1.00  0.00           H  
HETATM   36  H20 UNL     1      -0.865   2.293  -1.194  1.00  0.00           H  
HETATM   37  H21 UNL     1      -0.512   3.137   0.418  1.00  0.00           H  
HETATM   38  H22 UNL     1      -2.139   3.126  -0.286  1.00  0.00           H  
HETATM   39  H23 UNL     1      -2.886   1.594   2.109  1.00  0.00           H  
HETATM   40  H24 UNL     1      -0.267   0.088   1.687  1.00  0.00           H  
HETATM   41  H25 UNL     1       0.984   1.762   0.580  1.00  0.00           H  
HETATM   42  H26 UNL     1       0.688   0.977  -1.074  1.00  0.00           H  
CONECT    1    2    2   17   18
CONECT    2    3    4
CONECT    3   19   20   21
CONECT    4    5   16   22
CONECT    5    6   23   24
CONECT    6    7   25   26
CONECT    7    8    9   15
CONECT    8   27   28   29
CONECT    9   10   30   31
CONECT   10   11   32   33
CONECT   11   12   34   35
CONECT   12   13   14   15
CONECT   13   36   37   38
CONECT   14   39
CONECT   15   16   40
CONECT   16   41   42
END

HMDB0303104
     RDKit          3D
cis-Selinen-4-ol
 42 43  0  0  0  0  0  0  0  0999 V2000
    3.1846    1.5063   -0.9128 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1368    0.3635   -0.2524 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.4342   -0.3983   -0.1213 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8820   -0.1344    0.3200 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.5675   -1.5479   -0.0995 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2594   -2.0055    0.5100 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8684   -1.0741    0.0453 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.9365   -1.1826   -1.4317 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1682   -1.5083    0.6783 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2710   -0.6243    0.2263 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9048    0.7917   -0.0383 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6376    1.2592    0.5839 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.1992    2.5152   -0.1815 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9521    1.7299    1.8818 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5287    0.2693    0.5985 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.7773    0.8272    0.0202 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3344    2.1493   -1.0803 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.1205    1.8458   -1.3236 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.4136   -1.0882    0.7337 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.5881   -0.9030   -1.0950 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.2284    0.3670    0.0672 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.0236   -0.1590    1.4391 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3598   -2.1975    0.3414 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.5820   -1.6985   -1.1845 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.0674   -3.0338    0.2032 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3361   -1.8636    1.6081 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9838   -1.0473   -1.8348 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7084   -2.2609   -1.6925 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2122   -0.5937   -1.9985 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0485   -1.4098    1.7926 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4081   -2.5646    0.4715 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1150   -0.7201    0.9703 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7026   -1.0658   -0.7195 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7433    1.4299    0.3740 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9113    1.0508   -1.1385 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8652    2.2925   -1.1940 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5123    3.1375    0.4177 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1386    3.1258   -0.2860 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8855    1.5937    2.1086 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2673    0.0876    1.6865 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.9844    1.7619    0.5800 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.6884    0.9772   -1.0736 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  3
  2  3  1  0
  2  4  1  0
  4  5  1  0
  5  6  1  0
  6  7  1  0
  7  8  1  6
  7  9  1  0
  9 10  1  0
 10 11  1  0
 11 12  1  0
 12 13  1  0
 12 14  1  1
 12 15  1  0
 15 16  1  0
 16  4  1  0
 15  7  1  0
  1 17  1  0
  1 18  1  0
  3 19  1  0
  3 20  1  0
  3 21  1  0
  4 22  1  1
  5 23  1  0
  5 24  1  0
  6 25  1  0
  6 26  1  0
  8 27  1  0
  8 28  1  0
  8 29  1  0
  9 30  1  0
  9 31  1  0
 10 32  1  0
 10 33  1  0
 11 34  1  0
 11 35  1  0
 13 36  1  0
 13 37  1  0
 13 38  1  0
 14 39  1  0
 15 40  1  1
 16 41  1  0
 16 42  1  0
M  END

View in JSmol View Stereo Labels

Synonyms

Value	Source
Selin-11-en-4a-ol	Generator
Selin-11-en-4α-ol	Generator

Chemical Formula

C₁₅H₂₆O

Average Molecular Weight

222.372

Monoisotopic Molecular Weight

222.198365457

IUPAC Name

(1R,4aR,7R,8aR)-1,4a-dimethyl-7-(prop-1-en-2-yl)-decahydronaphthalen-1-ol

Traditional Name

(1R,4aR,7R,8aR)-1,4a-dimethyl-7-(prop-1-en-2-yl)-octahydronaphthalen-1-ol

CAS Registry Number

Not Available

SMILES

[H][C@]1(CC[C@@]2(C)CCC[C@@](C)(O)[C@]2([H])C1)C(C)=C

InChI Identifier

InChI=1S/C15H26O/c1-11(2)12-6-9-14(3)7-5-8-15(4,16)13(14)10-12/h12-13,16H,1,5-10H2,2-4H3/t12-,13-,14-,15-/m1/s1

InChI Key

DPQYOKVMVCQHMY-KBUPBQIOSA-N

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as eudesmane, isoeudesmane or cycloeudesmane sesquiterpenoids. These are sesquiterpenoids with a structure based on the eudesmane skeleton.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Prenol lipids

Sub Class

Sesquiterpenoids

Direct Parent

Eudesmane, isoeudesmane or cycloeudesmane sesquiterpenoids

Alternative Parents

Substituents

Eudesmane, isoeudesmane or cycloeudesmane sesquiterpenoid
Tertiary alcohol
Cyclic alcohol
Organic oxygen compound
Hydrocarbon derivative
Organooxygen compound
Alcohol
Aliphatic homopolycyclic compound

Molecular Framework

Aliphatic homopolycyclic compounds

External Descriptors

Not Available

Ontology

Not Available

Exogenous (HMDB: HMDB0303104)

Food

Herb and spice

Spice

Ginger (FooDB: FOOD00206)

Process

Not Available

Role

Not Available

Physical Properties

State

Not Available

Experimental Molecular Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Experimental Chromatographic Properties

Not Available

Predicted Molecular Properties

Property	Value	Source
logP	4.04	ALOGPS
logP	3.61	ChemAxon
logS	-4.4	ALOGPS
pKa (Strongest Basic)	-0.46	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	1	ChemAxon
Hydrogen Donor Count	1	ChemAxon
Polar Surface Area	20.23 Å²	ChemAxon
Rotatable Bond Count	1	ChemAxon
Refractivity	68.28 m³·mol⁻¹	ChemAxon
Polarizability	27.45 Å³	ChemAxon
Number of Rings	2	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	Yes	ChemAxon
MDDR-like Rule	No	ChemAxon

Predicted Chromatographic Properties

Predicted Collision Cross Sections

Predictor	Adduct Type	CCS Value (Å²)	Reference
AllCCS	[M+H]+	154.389	32859911
AllCCS	[M+H-H2O]+	150.688	32859911
AllCCS	[M+Na]+	158.82	32859911
AllCCS	[M+NH4]+	157.829	32859911
AllCCS	[M-H]-	161.396	32859911
AllCCS	[M+Na-2H]-	162.053	32859911
AllCCS	[M+HCOO]-	162.882	32859911
DeepCCS	[M+H]+	156.014	30932474
DeepCCS	[M-H]-	153.656	30932474
DeepCCS	[M-2H]-	188.148	30932474
DeepCCS	[M+Na]+	163.48	30932474

Predicted Kovats Retention Indices

Not Available

Spectra

MS/MS Spectra

Spectrum Type	Description	Splash Key	Deposition Date	Source	View
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - cis-Selinen-4-ol 10V, Positive-QTOF	splash10-0ab9-0290000000-515e361ceae5305e15db	2016-08-01	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - cis-Selinen-4-ol 20V, Positive-QTOF	splash10-0avi-3960000000-f075fe12795f34215736	2016-08-01	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - cis-Selinen-4-ol 40V, Positive-QTOF	splash10-00kr-9800000000-d8c13948903783fe948c	2016-08-01	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - cis-Selinen-4-ol 10V, Negative-QTOF	splash10-00di-0090000000-4b7f73ad51a23817385c	2016-08-03	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - cis-Selinen-4-ol 20V, Negative-QTOF	splash10-00di-0090000000-69ca27ed1fb37ce23d0d	2016-08-03	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - cis-Selinen-4-ol 40V, Negative-QTOF	splash10-0a4i-2950000000-fbc551da006eb22acc4f	2016-08-03	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - cis-Selinen-4-ol 10V, Positive-QTOF	splash10-03di-0930000000-d5fb2c351a4b50cfedfb	2021-10-21	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - cis-Selinen-4-ol 20V, Positive-QTOF	splash10-0avi-5920000000-20baddad9db79506586c	2021-10-21	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - cis-Selinen-4-ol 40V, Positive-QTOF	splash10-00n3-9000000000-47e57183fd3bac872a16	2021-10-21	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - cis-Selinen-4-ol 10V, Negative-QTOF	splash10-00di-0090000000-ab61d8a2af41e6ed2e49	2021-10-21	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - cis-Selinen-4-ol 20V, Negative-QTOF	splash10-00di-0090000000-ab61d8a2af41e6ed2e49	2021-10-21	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - cis-Selinen-4-ol 40V, Negative-QTOF	splash10-00di-0190000000-7ff88773380b4cdc4aa6	2021-10-21	Wishart Lab	View Spectrum

Biological Properties

Cellular Locations

Not Available

Biospecimen Locations

Not Available

Tissue Locations

Not Available

Pathways

Not Available

Name	SMPDB/PathBank	KEGG

Normal Concentrations

Not Available

Abnormal Concentrations

Not Available

Associated Disorders and Diseases

Disease References

None

Associated OMIM IDs

None

External Links

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FooDB ID

FDB007793

KNApSAcK ID

C00012813

Chemspider ID

20141267

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

15560330

PDB ID

Not Available

ChEBI ID

Not Available

Food Biomarker Ontology

Not Available

VMH ID

Not Available

MarkerDB ID

Not Available

Good Scents ID

Not Available

References

Synthesis Reference

Not Available

Material Safety Data Sheet (MSDS)

Not Available

General References

Not Available

Showing metabocard for cis-Selinen-4-ol (HMDB0303104)

MOL for HMDB0303104 (cis-Selinen-4-ol)

3D MOL for HMDB0303104 (cis-Selinen-4-ol)

3D SDF for HMDB0303104 (cis-Selinen-4-ol)

3D-SDF for HMDB0303104 (cis-Selinen-4-ol)

PDB for HMDB0303104 (cis-Selinen-4-ol)

3D PDB for HMDB0303104 (cis-Selinen-4-ol)

SMILES for HMDB0303104 (cis-Selinen-4-ol)

INCHI for HMDB0303104 (cis-Selinen-4-ol)

Structure for HMDB0303104 (cis-Selinen-4-ol)

3D Structure for HMDB0303104 (cis-Selinen-4-ol)

Predicted Collision Cross Sections

Predicted Kovats Retention Indices

MS/MS Spectra