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Record Information
Version5.0
StatusExpected but not Quantified
Creation Date2021-09-24 01:33:03 UTC
Update Date2021-09-24 01:33:03 UTC
HMDB IDHMDB0303392
Secondary Accession NumbersNone
Metabolite Identification
Common NameFIC
Description5-fluoro-1H-indole-2-carboxylic acid belongs to the class of organic compounds known as indolecarboxylic acids and derivatives. Indolecarboxylic acids and derivatives are compounds containing a carboxylic acid group (or a derivative thereof) linked to an indole. Based on a literature review very few articles have been published on 5-fluoro-1H-indole-2-carboxylic acid.
Structure
Thumb
Synonyms
ValueSource
5-Fluoro-1H-indole-2-carboxylateGenerator
Chemical FormulaC9H6FNO2
Average Molecular Weight179.1478
Monoisotopic Molecular Weight179.038256646
IUPAC Name5-fluoro-1H-indole-2-carboxylic acid
Traditional Name5-fluoro-1H-indole-2-carboxylic acid
CAS Registry NumberNot Available
SMILES
OC(=O)C1=CC2=CC(F)=CC=C2N1
InChI Identifier
InChI=1S/C9H6FNO2/c10-6-1-2-7-5(3-6)4-8(11-7)9(12)13/h1-4,11H,(H,12,13)
InChI KeyWTXBRZCVLDTWLP-UHFFFAOYSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as indolecarboxylic acids and derivatives. Indolecarboxylic acids and derivatives are compounds containing a carboxylic acid group (or a derivative thereof) linked to an indole.
KingdomOrganic compounds
Super ClassOrganoheterocyclic compounds
ClassIndoles and derivatives
Sub ClassIndolecarboxylic acids and derivatives
Direct ParentIndolecarboxylic acids and derivatives
Alternative Parents
Substituents
  • Indolecarboxylic acid derivative
  • Indole
  • Pyrrole-2-carboxylic acid
  • Pyrrole-2-carboxylic acid or derivatives
  • Aryl halide
  • Benzenoid
  • Substituted pyrrole
  • Aryl fluoride
  • Heteroaromatic compound
  • Pyrrole
  • Azacycle
  • Carboxylic acid derivative
  • Carboxylic acid
  • Monocarboxylic acid or derivatives
  • Organopnictogen compound
  • Organofluoride
  • Organohalogen compound
  • Organonitrogen compound
  • Organic oxygen compound
  • Organic nitrogen compound
  • Organooxygen compound
  • Hydrocarbon derivative
  • Organic oxide
  • Aromatic heteropolycyclic compound
Molecular FrameworkAromatic heteropolycyclic compounds
External DescriptorsNot Available
Ontology
Physiological effectNot Available
DispositionNot Available
ProcessNot Available
RoleNot Available
Physical Properties
StateNot Available
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
logP2.19ALOGPS
logP1.79ChemAxon
logS-2.1ALOGPS
pKa (Strongest Acidic)3.6ChemAxon
Physiological Charge-1ChemAxon
Hydrogen Acceptor Count2ChemAxon
Hydrogen Donor Count2ChemAxon
Polar Surface Area53.09 ŲChemAxon
Rotatable Bond Count1ChemAxon
Refractivity44.49 m³·mol⁻¹ChemAxon
Polarizability16.3 ųChemAxon
Number of Rings2ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
AllCCS[M+H]+136.70632859911
AllCCS[M+H-H2O]+132.21932859911
AllCCS[M+Na]+142.09332859911
AllCCS[M+NH4]+140.88732859911
AllCCS[M-H]-133.33532859911
AllCCS[M+Na-2H]-133.54232859911
AllCCS[M+HCOO]-133.8532859911
DeepCCS[M+H]+129.28730932474
DeepCCS[M-H]-125.7930932474
DeepCCS[M-2H]-162.90630932474
DeepCCS[M+Na]+138.44530932474

Predicted Kovats Retention Indices

Derivatized

Derivative Name / StructureSMILESKovats RI ValueColumn TypeReference
FIC,2TMS,isomer #1C[Si](C)(C)OC(=O)C1=CC2=CC(F)=CC=C2N1[Si](C)(C)C1889.2Semi standard non polar33892256
FIC,2TMS,isomer #1C[Si](C)(C)OC(=O)C1=CC2=CC(F)=CC=C2N1[Si](C)(C)C1866.4Standard non polar33892256
FIC,2TMS,isomer #1C[Si](C)(C)OC(=O)C1=CC2=CC(F)=CC=C2N1[Si](C)(C)C1846.3Standard polar33892256
FIC,2TBDMS,isomer #1CC(C)(C)[Si](C)(C)OC(=O)C1=CC2=CC(F)=CC=C2N1[Si](C)(C)C(C)(C)C2274.3Semi standard non polar33892256
FIC,2TBDMS,isomer #1CC(C)(C)[Si](C)(C)OC(=O)C1=CC2=CC(F)=CC=C2N1[Si](C)(C)C(C)(C)C2286.4Standard non polar33892256
FIC,2TBDMS,isomer #1CC(C)(C)[Si](C)(C)OC(=O)C1=CC2=CC(F)=CC=C2N1[Si](C)(C)C(C)(C)C2152.3Standard polar33892256
Spectra

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - FIC 10V, Positive-QTOFsplash10-001i-0900000000-4744f7966e635f3fc7782016-06-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - FIC 20V, Positive-QTOFsplash10-001i-0900000000-11106949ce3ca1c5e83b2016-06-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - FIC 40V, Positive-QTOFsplash10-03xr-0900000000-53ab7ade0fea655dd4f82016-06-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - FIC 10V, Negative-QTOFsplash10-004i-0900000000-bc309b5c19319946bfe82016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - FIC 20V, Negative-QTOFsplash10-0059-0900000000-3f9c0d571c5f3e2716fd2016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - FIC 40V, Negative-QTOFsplash10-03e9-0900000000-b516ed1b13722cc9f1902016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - FIC 10V, Positive-QTOFsplash10-001i-0900000000-92c5de9669dca5074a002021-10-21Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - FIC 20V, Positive-QTOFsplash10-03e9-0900000000-2545c9634d2ed592141a2021-10-21Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - FIC 40V, Positive-QTOFsplash10-03e9-1900000000-f845ba09a7beb1a32c002021-10-21Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - FIC 10V, Negative-QTOFsplash10-003r-0900000000-fc12d8d85809cbcb8a602021-10-21Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - FIC 20V, Negative-QTOFsplash10-001i-0900000000-6c456b2ab52a5242a6f42021-10-21Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - FIC 40V, Negative-QTOFsplash10-001i-0900000000-6c456b2ab52a5242a6f42021-10-21Wishart LabView Spectrum
Biological Properties
Cellular LocationsNot Available
Biospecimen LocationsNot Available
Tissue LocationsNot Available
Pathways
Normal Concentrations
Not Available
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDFDB012897
KNApSAcK IDNot Available
Chemspider ID1754
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem CompoundNot Available
PDB IDNot Available
ChEBI IDNot Available
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General ReferencesNot Available