Hmdb loader
Record Information
Version5.0
StatusExpected but not Quantified
Creation Date2021-09-24 05:20:26 UTC
Update Date2021-09-24 05:20:26 UTC
HMDB IDHMDB0303879
Secondary Accession NumbersNone
Metabolite Identification
Common Namemethyl-(E)-geranate
Descriptionmethyl 3,7-dimethylocta-2,6-dienoate belongs to the class of organic compounds known as acyclic monoterpenoids. These are monoterpenes that do not contain a cycle. Based on a literature review very few articles have been published on methyl 3,7-dimethylocta-2,6-dienoate.
Structure
Thumb
Synonyms
ValueSource
Methyl 3,7-dimethylocta-2,6-dienoic acidGenerator
Methyl-(e)-geranic acidGenerator
Chemical FormulaC11H18O2
Average Molecular Weight182.263
Monoisotopic Molecular Weight182.13067982
IUPAC Namemethyl 3,7-dimethylocta-2,6-dienoate
Traditional Namemethyl 3,7-dimethylocta-2,6-dienoate
CAS Registry NumberNot Available
SMILES
COC(=O)C=C(C)CCC=C(C)C
InChI Identifier
InChI=1S/C11H18O2/c1-9(2)6-5-7-10(3)8-11(12)13-4/h6,8H,5,7H2,1-4H3
InChI KeyACOBBFVLNKYODD-UHFFFAOYSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as acyclic monoterpenoids. These are monoterpenes that do not contain a cycle.
KingdomOrganic compounds
Super ClassLipids and lipid-like molecules
ClassPrenol lipids
Sub ClassMonoterpenoids
Direct ParentAcyclic monoterpenoids
Alternative Parents
Substituents
  • Acyclic monoterpenoid
  • Fatty acid ester
  • Fatty acyl
  • Alpha,beta-unsaturated carboxylic ester
  • Enoate ester
  • Methyl ester
  • Carboxylic acid ester
  • Monocarboxylic acid or derivatives
  • Carboxylic acid derivative
  • Organic oxygen compound
  • Organic oxide
  • Hydrocarbon derivative
  • Organooxygen compound
  • Carbonyl group
  • Aliphatic acyclic compound
Molecular FrameworkAliphatic acyclic compounds
External DescriptorsNot Available
Ontology
Physiological effect
Disposition
ProcessNot Available
RoleNot Available
Physical Properties
StateNot Available
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
logP3.67ALOGPS
logP3.2ChemAxon
logS-2.7ALOGPS
pKa (Strongest Basic)-6.8ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count1ChemAxon
Hydrogen Donor Count0ChemAxon
Polar Surface Area26.3 ŲChemAxon
Rotatable Bond Count5ChemAxon
Refractivity55.82 m³·mol⁻¹ChemAxon
Polarizability21.76 ųChemAxon
Number of Rings0ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterYesChemAxon
Veber's RuleYesChemAxon
MDDR-like RuleNoChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
AllCCS[M+H]+143.77132859911
AllCCS[M+H-H2O]+139.91232859911
AllCCS[M+Na]+148.39832859911
AllCCS[M+NH4]+147.36332859911
AllCCS[M-H]-143.81832859911
AllCCS[M+Na-2H]-145.24732859911
AllCCS[M+HCOO]-146.90332859911
DeepCCS[M+H]+148.10730932474
DeepCCS[M-H]-145.53830932474
DeepCCS[M-2H]-181.04230932474
DeepCCS[M+Na]+156.09330932474

Predicted Kovats Retention Indices

Not Available
Spectra

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - methyl-(E)-geranate 10V, Positive-QTOFsplash10-0kai-0900000000-e2a7eab9b3b2864a66a62016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - methyl-(E)-geranate 20V, Positive-QTOFsplash10-0a4i-4900000000-88b190902ab89ae77a662016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - methyl-(E)-geranate 40V, Positive-QTOFsplash10-0ldi-9200000000-27c3619b5742fcc5f2912016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - methyl-(E)-geranate 10V, Negative-QTOFsplash10-001i-0900000000-bc713d47553c9ef95bc32016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - methyl-(E)-geranate 20V, Negative-QTOFsplash10-001j-1900000000-e97e31c9108b451392f72016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - methyl-(E)-geranate 40V, Negative-QTOFsplash10-0a4m-5900000000-3397304f51056282febc2016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - methyl-(E)-geranate 10V, Positive-QTOFsplash10-001i-9600000000-f2dfc412a86999e8ac292021-10-21Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - methyl-(E)-geranate 20V, Positive-QTOFsplash10-00lr-9100000000-99680cf76c1444b32e772021-10-21Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - methyl-(E)-geranate 40V, Positive-QTOFsplash10-00kf-9000000000-cef19815c885a32f0bba2021-10-21Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - methyl-(E)-geranate 10V, Negative-QTOFsplash10-0089-0900000000-96f127d7c73e3ea227252021-10-21Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - methyl-(E)-geranate 20V, Negative-QTOFsplash10-00di-1900000000-50e0a7831772320994032021-10-21Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - methyl-(E)-geranate 40V, Negative-QTOFsplash10-0ab9-9600000000-066e902d88d27093ed8f2021-10-21Wishart LabView Spectrum
Biological Properties
Cellular LocationsNot Available
Biospecimen LocationsNot Available
Tissue LocationsNot Available
Pathways
Normal Concentrations
Not Available
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDFDB029718
KNApSAcK IDNot Available
Chemspider ID28689539
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem CompoundNot Available
PDB IDNot Available
ChEBI IDNot Available
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General ReferencesNot Available