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Record Information

Version

5.0

Status

Expected but not Quantified

Creation Date

2021-09-24 06:11:37 UTC

Update Date

2021-09-24 06:11:37 UTC

HMDB ID

HMDB0303984

Secondary Accession Numbers

None

Metabolite Identification

Common Name

(9Z)-12-oxo-dodec-9-enoate

Description

(9z)-12-oxo-dodec-9-enoate is practically insoluble (in water) and a weakly acidic compound (based on its pKa). (9z)-12-oxo-dodec-9-enoate can be found in a number of food items such as abiyuch, butternut squash, prickly pear, and garden tomato (variety), which makes (9z)-12-oxo-dodec-9-enoate a potential biomarker for the consumption of these food products.

Structure

MOL 3D MOL SDF 3D SDF PDB 3D PDB SMILES InChI

HMDB0303984
     RDKit          3D
(9Z)-12-oxo-dodec-9-enoate
 34 33  0  0  0  0  0  0  0  0999 V2000
    5.6309    0.7710    1.8530 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.8246    0.5923    0.6626 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.2371   -0.5264   -0.0913 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.8195   -0.3732   -0.4367 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0772    0.6706   -0.1161 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6452    0.7367   -0.5127 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8177    0.8418    0.7340 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6637    0.9173    0.4616 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1257   -0.2965   -0.2590 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5894   -0.3386   -0.5869 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4904   -0.2769    0.5795 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9464   -0.3229    0.2100 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.3663   -1.5544   -0.4726 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5619   -2.4874   -0.6505 O   0  0  0  0  0  0  0  0  0  0  0  0
   -6.6709   -1.6679   -0.9182 O   0  0  0  0  0  1  0  0  0  0  0  0
    6.4808    1.3358    0.1742 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.3778   -1.4718    0.5051 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.8381   -0.6338   -1.0387 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.3689   -1.2061   -1.0067 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.4941    1.4905    0.4370 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.5510    1.6453   -1.1510 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.4229   -0.1308   -1.1327 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.0647   -0.0638    1.3535 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.1907    1.7064    1.3186 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8283    1.8593   -0.1055 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1832    1.0092    1.4252 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5907   -0.3300   -1.2515 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7888   -1.1938    0.2894 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8607    0.4925   -1.2890 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7530   -1.2607   -1.1687 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3532    0.7183    1.0965 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2801   -1.0233    1.3704 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1798    0.5898   -0.4090 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6089   -0.2185    1.0994 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0
  2  3  1  0
  3  4  1  0
  4  5  2  3
  5  6  1  0
  6  7  1  0
  7  8  1  0
  8  9  1  0
  9 10  1  0
 10 11  1  0
 11 12  1  0
 12 13  1  0
 13 14  2  0
 13 15  1  0
  2 16  1  0
  3 17  1  0
  3 18  1  0
  4 19  1  0
  5 20  1  0
  6 21  1  0
  6 22  1  0
  7 23  1  0
  7 24  1  0
  8 25  1  0
  8 26  1  0
  9 27  1  0
  9 28  1  0
 10 29  1  0
 10 30  1  0
 11 31  1  0
 11 32  1  0
 12 33  1  0
 12 34  1  0
M  CHG  1  15  -1
M  END

  Mrv1533005141512232D          

 15 14  0  0  0  0            999 V2000
    0.1401    2.5559    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5743    2.1434    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.8546    2.1434    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5691    2.5559    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2836    2.1434    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9980    2.5559    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7125    2.1434    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.4270    2.5559    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.1414    2.1434    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.8559    2.5559    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.5704    2.1434    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.2849    2.5559    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.9993    2.1434    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.7138    2.5559    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.9993    1.3184    0.0000 O   0  5  0  0  0  0  0  0  0  0  0  0
  1  2  2  0  0  0  0
  1  3  1  0  0  0  0
  4  3  1  4  0  0  0
  4  5  2  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  2  0  0  0  0
 13 15  1  0  0  0  0
M  CHG  1  15  -1
M  END
> <DATABASE_ID>
HMDB0303984

> <DATABASE_NAME>
hmdb

> <SMILES>
[O-]C(=O)CCCCCCCC=CCC=O

> <INCHI_IDENTIFIER>
InChI=1S/C12H20O3/c13-11-9-7-5-3-1-2-4-6-8-10-12(14)15/h5,7,11H,1-4,6,8-10H2,(H,14,15)/p-1

> <INCHI_KEY>
KIHXTOVLSZRTHJ-UHFFFAOYSA-M

> <FORMULA>
C12H19O3

> <MOLECULAR_WEIGHT>
211.282

> <EXACT_MASS>
211.133968052

> <JCHEM_ACCEPTOR_COUNT>
3

> <JCHEM_ATOM_COUNT>
34

> <JCHEM_AVERAGE_POLARIZABILITY>
24.527760077449337

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
0

> <JCHEM_FORMAL_CHARGE>
-1

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
12-oxododec-9-enoate

> <ALOGPS_LOGP>
3.76

> <JCHEM_LOGP>
2.637528443666667

> <ALOGPS_LOGS>
-3.82

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
0

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-1

> <JCHEM_PKA>
18.39079762680774

> <JCHEM_PKA_STRONGEST_ACIDIC>
4.988167283904201

> <JCHEM_PKA_STRONGEST_BASIC>
-7.036019798994997

> <JCHEM_POLAR_SURFACE_AREA>
57.2

> <JCHEM_REFRACTIVITY>
71.3733

> <JCHEM_ROTATABLE_BOND_COUNT>
10

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
3.45e-02 g/l

> <JCHEM_TRADITIONAL_IUPAC>
12-oxododec-9-enoate

> <JCHEM_VEBER_RULE>
0

$$$$

HMDB0303984
     RDKit          3D
(9Z)-12-oxo-dodec-9-enoate
 34 33  0  0  0  0  0  0  0  0999 V2000
    5.6309    0.7710    1.8530 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.8246    0.5923    0.6626 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.2371   -0.5264   -0.0913 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.8195   -0.3732   -0.4367 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0772    0.6706   -0.1161 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6452    0.7367   -0.5127 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8177    0.8418    0.7340 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6637    0.9173    0.4616 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1257   -0.2965   -0.2590 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5894   -0.3386   -0.5869 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4904   -0.2769    0.5795 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9464   -0.3229    0.2100 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.3663   -1.5544   -0.4726 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5619   -2.4874   -0.6505 O   0  0  0  0  0  0  0  0  0  0  0  0
   -6.6709   -1.6679   -0.9182 O   0  0  0  0  0  1  0  0  0  0  0  0
    6.4808    1.3358    0.1742 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.3778   -1.4718    0.5051 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.8381   -0.6338   -1.0387 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.3689   -1.2061   -1.0067 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.4941    1.4905    0.4370 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.5510    1.6453   -1.1510 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.4229   -0.1308   -1.1327 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.0647   -0.0638    1.3535 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.1907    1.7064    1.3186 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8283    1.8593   -0.1055 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1832    1.0092    1.4252 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5907   -0.3300   -1.2515 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7888   -1.1938    0.2894 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8607    0.4925   -1.2890 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7530   -1.2607   -1.1687 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3532    0.7183    1.0965 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2801   -1.0233    1.3704 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1798    0.5898   -0.4090 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6089   -0.2185    1.0994 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0
  2  3  1  0
  3  4  1  0
  4  5  2  3
  5  6  1  0
  6  7  1  0
  7  8  1  0
  8  9  1  0
  9 10  1  0
 10 11  1  0
 11 12  1  0
 12 13  1  0
 13 14  2  0
 13 15  1  0
  2 16  1  0
  3 17  1  0
  3 18  1  0
  4 19  1  0
  5 20  1  0
  6 21  1  0
  6 22  1  0
  7 23  1  0
  7 24  1  0
  8 25  1  0
  8 26  1  0
  9 27  1  0
  9 28  1  0
 10 29  1  0
 10 30  1  0
 11 31  1  0
 11 32  1  0
 12 33  1  0
 12 34  1  0
M  CHG  1  15  -1
M  END

HEADER    PROTEIN                                 14-MAY-15   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   14-MAY-15         0                                  
HETATM    1  C   UNK     0       0.262   4.771   0.000  0.00  0.00           C+0
HETATM    2  O   UNK     0      -1.072   4.001   0.000  0.00  0.00           O+0
HETATM    3  C   UNK     0       1.595   4.001   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       2.929   4.771   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       4.263   4.001   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       5.596   4.771   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       6.930   4.001   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       8.264   4.771   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       9.597   4.001   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0      10.931   4.771   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0      12.265   4.001   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0      13.598   4.771   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0      14.932   4.001   0.000  0.00  0.00           C+0
HETATM   14  O   UNK     0      16.266   4.771   0.000  0.00  0.00           O+0
HETATM   15  O   UNK     0      14.932   2.461   0.000  0.00  0.00           O-1
CONECT    1    2    3                                                       
CONECT    2    1                                                            
CONECT    3    1    4                                                       
CONECT    4    3    5                                                       
CONECT    5    4    6                                                       
CONECT    6    5    7                                                       
CONECT    7    6    8                                                       
CONECT    8    7    9                                                       
CONECT    9    8   10                                                       
CONECT   10    9   11                                                       
CONECT   11   10   12                                                       
CONECT   12   11   13                                                       
CONECT   13   12   14   15                                                  
CONECT   14   13                                                            
CONECT   15   13                                                            
MASTER        0    0    0    0    0    0    0    0   15    0   28    0
END

COMPND    HMDB0303984
HETATM    1  O1  UNL     1       5.631   0.771   1.853  1.00  0.00           O  
HETATM    2  C1  UNL     1       5.825   0.592   0.663  1.00  0.00           C  
HETATM    3  C2  UNL     1       5.237  -0.526  -0.091  1.00  0.00           C  
HETATM    4  C3  UNL     1       3.819  -0.373  -0.437  1.00  0.00           C  
HETATM    5  C4  UNL     1       3.077   0.671  -0.116  1.00  0.00           C  
HETATM    6  C5  UNL     1       1.645   0.737  -0.513  1.00  0.00           C  
HETATM    7  C6  UNL     1       0.818   0.842   0.734  1.00  0.00           C  
HETATM    8  C7  UNL     1      -0.664   0.917   0.462  1.00  0.00           C  
HETATM    9  C8  UNL     1      -1.126  -0.296  -0.259  1.00  0.00           C  
HETATM   10  C9  UNL     1      -2.589  -0.339  -0.587  1.00  0.00           C  
HETATM   11  C10 UNL     1      -3.490  -0.277   0.580  1.00  0.00           C  
HETATM   12  C11 UNL     1      -4.946  -0.323   0.210  1.00  0.00           C  
HETATM   13  C12 UNL     1      -5.366  -1.554  -0.473  1.00  0.00           C  
HETATM   14  O2  UNL     1      -4.562  -2.487  -0.650  1.00  0.00           O  
HETATM   15  O3  UNL     1      -6.671  -1.668  -0.918  1.00  0.00           O1-
HETATM   16  H1  UNL     1       6.481   1.336   0.174  1.00  0.00           H  
HETATM   17  H2  UNL     1       5.378  -1.472   0.505  1.00  0.00           H  
HETATM   18  H3  UNL     1       5.838  -0.634  -1.039  1.00  0.00           H  
HETATM   19  H4  UNL     1       3.369  -1.206  -1.007  1.00  0.00           H  
HETATM   20  H5  UNL     1       3.494   1.491   0.437  1.00  0.00           H  
HETATM   21  H6  UNL     1       1.551   1.645  -1.151  1.00  0.00           H  
HETATM   22  H7  UNL     1       1.423  -0.131  -1.133  1.00  0.00           H  
HETATM   23  H8  UNL     1       1.065  -0.064   1.354  1.00  0.00           H  
HETATM   24  H9  UNL     1       1.191   1.706   1.319  1.00  0.00           H  
HETATM   25  H10 UNL     1      -0.828   1.859  -0.106  1.00  0.00           H  
HETATM   26  H11 UNL     1      -1.183   1.009   1.425  1.00  0.00           H  
HETATM   27  H12 UNL     1      -0.591  -0.330  -1.251  1.00  0.00           H  
HETATM   28  H13 UNL     1      -0.789  -1.194   0.289  1.00  0.00           H  
HETATM   29  H14 UNL     1      -2.861   0.492  -1.289  1.00  0.00           H  
HETATM   30  H15 UNL     1      -2.753  -1.261  -1.169  1.00  0.00           H  
HETATM   31  H16 UNL     1      -3.353   0.718   1.097  1.00  0.00           H  
HETATM   32  H17 UNL     1      -3.280  -1.023   1.370  1.00  0.00           H  
HETATM   33  H18 UNL     1      -5.180   0.590  -0.409  1.00  0.00           H  
HETATM   34  H19 UNL     1      -5.609  -0.218   1.099  1.00  0.00           H  
CONECT    1    2    2
CONECT    2    3   16
CONECT    3    4   17   18
CONECT    4    5    5   19
CONECT    5    6   20
CONECT    6    7   21   22
CONECT    7    8   23   24
CONECT    8    9   25   26
CONECT    9   10   27   28
CONECT   10   11   29   30
CONECT   11   12   31   32
CONECT   12   13   33   34
CONECT   13   14   14   15
END

HMDB0303984
     RDKit          3D
(9Z)-12-oxo-dodec-9-enoate
 34 33  0  0  0  0  0  0  0  0999 V2000
    5.6309    0.7710    1.8530 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.8246    0.5923    0.6626 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.2371   -0.5264   -0.0913 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.8195   -0.3732   -0.4367 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0772    0.6706   -0.1161 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6452    0.7367   -0.5127 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8177    0.8418    0.7340 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6637    0.9173    0.4616 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1257   -0.2965   -0.2590 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5894   -0.3386   -0.5869 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4904   -0.2769    0.5795 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9464   -0.3229    0.2100 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.3663   -1.5544   -0.4726 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5619   -2.4874   -0.6505 O   0  0  0  0  0  0  0  0  0  0  0  0
   -6.6709   -1.6679   -0.9182 O   0  0  0  0  0  1  0  0  0  0  0  0
    6.4808    1.3358    0.1742 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.3778   -1.4718    0.5051 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.8381   -0.6338   -1.0387 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.3689   -1.2061   -1.0067 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.4941    1.4905    0.4370 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.5510    1.6453   -1.1510 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.4229   -0.1308   -1.1327 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.0647   -0.0638    1.3535 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.1907    1.7064    1.3186 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8283    1.8593   -0.1055 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1832    1.0092    1.4252 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5907   -0.3300   -1.2515 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7888   -1.1938    0.2894 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8607    0.4925   -1.2890 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7530   -1.2607   -1.1687 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3532    0.7183    1.0965 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2801   -1.0233    1.3704 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1798    0.5898   -0.4090 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6089   -0.2185    1.0994 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0
  2  3  1  0
  3  4  1  0
  4  5  2  3
  5  6  1  0
  6  7  1  0
  7  8  1  0
  8  9  1  0
  9 10  1  0
 10 11  1  0
 11 12  1  0
 12 13  1  0
 13 14  2  0
 13 15  1  0
  2 16  1  0
  3 17  1  0
  3 18  1  0
  4 19  1  0
  5 20  1  0
  6 21  1  0
  6 22  1  0
  7 23  1  0
  7 24  1  0
  8 25  1  0
  8 26  1  0
  9 27  1  0
  9 28  1  0
 10 29  1  0
 10 30  1  0
 11 31  1  0
 11 32  1  0
 12 33  1  0
 12 34  1  0
M  CHG  1  15  -1
M  END

View in JSmol View Stereo Labels

Synonyms

Value	Source
12-Oxododec-9-enoic acid	Generator
(9Z)-12-oxo-Dodec-9-enoic acid	Generator

Chemical Formula

C₁₂H₁₉O₃

Average Molecular Weight

211.282

Monoisotopic Molecular Weight

211.133968052

IUPAC Name

12-oxododec-9-enoate

Traditional Name

12-oxododec-9-enoate

CAS Registry Number

Not Available

SMILES

[O-]C(=O)CCCCCCCC=CCC=O

InChI Identifier

InChI=1S/C12H20O3/c13-11-9-7-5-3-1-2-4-6-8-10-12(14)15/h5,7,11H,1-4,6,8-10H2,(H,14,15)/p-1

InChI Key

KIHXTOVLSZRTHJ-UHFFFAOYSA-M

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as medium-chain fatty acids. These are fatty acids with an aliphatic tail that contains between 4 and 12 carbon atoms.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Fatty Acyls

Sub Class

Fatty acids and conjugates

Direct Parent

Medium-chain fatty acids

Alternative Parents

Substituents

Medium-chain fatty acid
Unsaturated fatty acid
Straight chain fatty acid
Alpha-hydrogen aldehyde
Monocarboxylic acid or derivatives
Carboxylic acid
Carboxylic acid derivative
Organic oxygen compound
Organic oxide
Hydrocarbon derivative
Organooxygen compound
Carbonyl group
Aldehyde
Organic anion
Aliphatic acyclic compound

Molecular Framework

Aliphatic acyclic compounds

External Descriptors

a medium chain fatty acid (12-OXO-CIS-9-DODECENOATE )
an unsaturated fatty acid (12-OXO-CIS-9-DODECENOATE )

Ontology

Not Available

Exogenous (HMDB: HMDB0303984)

Herbs and Spices (FooDB: FOOD00866)

Nut

Almond (FooDB: FOOD00148)
Brazil nut (FooDB: FOOD00024)
Cashew nut (FooDB: FOOD00011)
Chestnut (FooDB: FOOD00045)
Peanut (FooDB: FOOD00016)
Hazelnut (FooDB: FOOD00376)
Pecan nut (FooDB: FOOD00044)
Pine nut (FooDB: FOOD00138)
Pistachio (FooDB: FOOD00140)
Walnut (FooDB: FOOD00608)
Acorn (FooDB: FOOD00282)
Beech nut (FooDB: FOOD00299)
Butternut (FooDB: FOOD00316)
Chinese chestnut (FooDB: FOOD00331)
European chestnut (FooDB: FOOD00363)
Hickory nut (FooDB: FOOD00377)
Macadamia nut (FooDB: FOOD00525)
Mixed nuts (FooDB: FOOD00771)
Pili nut (FooDB: FOOD00432)
Colorado pinyon (FooDB: FOOD00433)
Black walnut (FooDB: FOOD00093)
Common walnut (FooDB: FOOD00094)
Japanese chestnut (FooDB: FOOD00385)
Common hazelnut (FooDB: FOOD00062)
Macadamia nut (M. tetraphylla) (FooDB: FOOD00225)
Japanese walnut (FooDB: FOOD00240)
Nuts (FooDB: FOOD00869)

Fruit

Pome

Drupe

Apricot (FooDB: FOOD00144)
Prunus (Cherry, Plum) (FooDB: FOOD00143)
Nectarine (FooDB: FOOD00229)
Peach (FooDB: FOOD00149)
European plum (FooDB: FOOD00147)
Sour cherry (FooDB: FOOD00146)
Sweet cherry (FooDB: FOOD00145)
Common chokecherry (FooDB: FOOD00562)
Peach (var.) (FooDB: FOOD00230)

Tropical fruit

Berry

Bilberry (FooDB: FOOD00193)
Rubus (Blackberry, Raspberry) (FooDB: FOOD00160)
Vaccinium (Blueberry, Cranberry, Huckleberry) (FooDB: FOOD00188)
Blackcurrant (FooDB: FOOD00155)
Redcurrant (FooDB: FOOD00156)
Elderberry (FooDB: FOOD00358)
Gooseberry (FooDB: FOOD00157)
Grape (FooDB: FOOD00369)
Lingonberry (FooDB: FOOD00194)
Loganberry (FooDB: FOOD00400)
Strawberry (FooDB: FOOD00083)
Boysenberry (FooDB: FOOD00542)
American cranberry (FooDB: FOOD00192)
Common grape (FooDB: FOOD00204)
Strawberry guava (FooDB: FOOD00482)
Black mulberry (FooDB: FOOD00117)
Red raspberry (FooDB: FOOD00162)
Muscadine grape (FooDB: FOOD00203)
Salmonberry (FooDB: FOOD00456)
Alaska blueberry (FooDB: FOOD00380)
Sea-buckthornberry (FooDB: FOOD00087)
Black elderberry (FooDB: FOOD00166)
Black crowberry (FooDB: FOOD00075)
Black huckleberry (FooDB: FOOD00084)
Mulberry (FooDB: FOOD00116)
Black chokeberry (FooDB: FOOD00136)
Cloudberry (FooDB: FOOD00161)
Black raspberry (FooDB: FOOD00163)
Rowanberry (FooDB: FOOD00176)
Lowbush blueberry (FooDB: FOOD00189)
Sparkleberry (FooDB: FOOD00190)
Highbush blueberry (FooDB: FOOD00191)
Arctic blackberry (FooDB: FOOD00207)
Bayberry (FooDB: FOOD00209)
Elliott's blueberry (FooDB: FOOD00210)
Canada blueberry (FooDB: FOOD00211)
Bog bilberry (FooDB: FOOD00212)
Buffalo currant (FooDB: FOOD00213)
European cranberry (FooDB: FOOD00217)
Deerberry (FooDB: FOOD00218)
Cascade huckleberry (FooDB: FOOD00220)
Oval-leaf huckleberry (FooDB: FOOD00221)
Evergreen huckleberry (FooDB: FOOD00222)
Red huckleberry (FooDB: FOOD00223)
Summer grape (FooDB: FOOD00227)
Fox grape (FooDB: FOOD00228)
Half-highbush blueberry (FooDB: FOOD00248)
Jostaberry (FooDB: FOOD00257)
Sweet rowanberry (FooDB: FOOD00265)
Skunk currant (FooDB: FOOD00267)
Squashberry (FooDB: FOOD00344)
Ohelo berry (FooDB: FOOD00419)
Chinese bayberry (FooDB: FOOD00852)
Saskatoon berry (FooDB: FOOD00884)
Nanking cherry (FooDB: FOOD00885)

Other fruit

Date (FooDB: FOOD00135)
Fig (FooDB: FOOD00081)
Jujube (FooDB: FOOD00388)

Citrus

Grapefruit (FooDB: FOOD00256)
Lemon (FooDB: FOOD00054)
Lime (FooDB: FOOD00053)
Sweet orange (FooDB: FOOD00057)
Mandarin orange (Clementine, Tangerine) (FooDB: FOOD00056)
Persian lime (FooDB: FOOD00543)
Pummelo (FooDB: FOOD00055)
Grapefruit/Pummelo hybrid (FooDB: FOOD00255)
Citrus (FooDB: FOOD00859)

Fruits (FooDB: FOOD00871)

Vegetable

Shoot vegetable

Fruit vegetable

Eggplant (FooDB: FOOD00174)
Avocado (FooDB: FOOD00130)
Groundcherry (FooDB: FOOD00371)
Olive (FooDB: FOOD00121)
Pepper (FooDB: FOOD00040)
Garden tomato (FooDB: FOOD00171)
Mexican groundcherry (FooDB: FOOD00491)
Green bell pepper (FooDB: FOOD00877)
Yellow bell pepper (FooDB: FOOD00878)
Red bell pepper (FooDB: FOOD00880)
Italian sweet red pepper (FooDB: FOOD00881)
Garden tomato (var.) (FooDB: FOOD00173)
Cherry tomato (FooDB: FOOD00172)
Pepper (C. baccatum) (FooDB: FOOD00231)
Pepper (C. chinense) (FooDB: FOOD00232)
Pepper (Capsicum) (FooDB: FOOD00233)
Pepper (C. frutescens) (FooDB: FOOD00428)
Pepper (C. pubescens) (FooDB: FOOD00849)
Orange bell pepper (FooDB: FOOD00879)

Root vegetable

Cabbage

Leaf vegetable

Lettuce (FooDB: FOOD00095)
Swiss chard (FooDB: FOOD00237)
Garden cress (FooDB: FOOD00099)
Endive (FooDB: FOOD00048)
Spinach (FooDB: FOOD00178)
Common beet (FooDB: FOOD00025)
Garland chrysanthemum (FooDB: FOOD00333)
Jute (FooDB: FOOD00389)
Lambsquarters (FooDB: FOOD00394)
New Zealand spinach (FooDB: FOOD00415)
Swamp cabbage (FooDB: FOOD00091)
Rocket salad (ssp.) (FooDB: FOOD00077)
Yautia (FooDB: FOOD00510)
Romaine lettuce (FooDB: FOOD00888)
Rocket salad (FooDB: FOOD00244)
Chicory leaves (FooDB: FOOD00250)
Corn salad (FooDB: FOOD00340)
Malabar spinach (FooDB: FOOD00404)
Ostrich fern (FooDB: FOOD00556)
Green vegetables (FooDB: FOOD00872)

Mushroom

Tuber

Onion-family vegetable

Leek (FooDB: FOOD00007)
Allium (FooDB: FOOD00005)
Wild leek (FooDB: FOOD00396)
Shallot (FooDB: FOOD00243)
Garden onion (FooDB: FOOD00006)
Garden onion (var.) (FooDB: FOOD00226)
Onion-family vegetables (FooDB: FOOD00855)
Green onion (FooDB: FOOD00963)
Red onion (FooDB: FOOD00962)

Other vegetable

Okra (FooDB: FOOD00420)
Horseradish tree (FooDB: FOOD00379)
Sacred lotus (FooDB: FOOD00402)
Tree fern (FooDB: FOOD00797)
Chinese water chestnut (FooDB: FOOD00332)
Nopal (FooDB: FOOD00416)
Carob (FooDB: FOOD00321)
Agave (FooDB: FOOD00563)
Narrowleaf cattail (FooDB: FOOD00564)
Giant butterbur (FooDB: FOOD00314)
Sesbania flower (FooDB: FOOD00469)

Stalk vegetable

Brassica

Brassicas (FooDB: FOOD00857)

Cereal and cereal product

Other bread

Other bread (FooDB: FOOD00269)

Cereal

Cereal product

Dough

Sourdough (FooDB: FOOD00275)

Cereals and cereal products (FooDB: FOOD00858)

Pulse

Bean

Lentil

Lentils (FooDB: FOOD00098)

Pea

Other pulse

White lupine (FooDB: FOOD00403)
Lupine (FooDB: FOOD00104)

Pulses (FooDB: FOOD00867)

Soy

Soy bean (FooDB: FOOD00085)

Soy product

Other soy product (FooDB: FOOD00271)

Abalone (FooDB: FOOD00279)
Conch (FooDB: FOOD00611)

Gourd

Chayote (FooDB: FOOD00325)
Cucumber (FooDB: FOOD00065)
Muskmelon (FooDB: FOOD00064)
Cucurbita (FooDB: FOOD00066)
Watermelon (FooDB: FOOD00052)
Bitter gourd (FooDB: FOOD00115)
Calabash (FooDB: FOOD00318)
Towel gourd (FooDB: FOOD00492)
Winter squash (FooDB: FOOD00283)
Butternut squash (FooDB: FOOD00317)
Wax gourd (FooDB: FOOD00499)
Green zucchini (FooDB: FOOD00875)
Yellow zucchini (FooDB: FOOD00876)
Japanese pumpkin (FooDB: FOOD00886)
Sunburst squash (pattypan squash) (FooDB: FOOD00874)
Tinda (FooDB: FOOD00559)
Horned melon (FooDB: FOOD00761)

Tea

Herbal tea

Greenthread tea (FooDB: FOOD00820)

Cocoa and cocoa product

Cocoa

Cocoa bean (FooDB: FOOD00182)

Process

Not Available

Role

Not Available

Physical Properties

State

Not Available

Experimental Molecular Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Experimental Chromatographic Properties

Not Available

Predicted Molecular Properties

Property	Value	Source
logP	3.76	ALOGPS
logP	2.64	ChemAxon
logS	-3.8	ALOGPS
pKa (Strongest Acidic)	4.99	ChemAxon
pKa (Strongest Basic)	-7	ChemAxon
Physiological Charge	-1	ChemAxon
Hydrogen Acceptor Count	3	ChemAxon
Hydrogen Donor Count	0	ChemAxon
Polar Surface Area	57.2 Å²	ChemAxon
Rotatable Bond Count	10	ChemAxon
Refractivity	71.37 m³·mol⁻¹	ChemAxon
Polarizability	24.53 Å³	ChemAxon
Number of Rings	0	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

Predicted Chromatographic Properties

Predicted Collision Cross Sections

Predictor	Adduct Type	CCS Value (Å²)	Reference
AllCCS	[M+H]+	149.831	32859911
AllCCS	[M+H-H2O]+	146.25	32859911
AllCCS	[M+Na]+	154.117	32859911
AllCCS	[M+NH4]+	153.159	32859911
AllCCS	[M-H]-	152.49	32859911
AllCCS	[M+Na-2H]-	153.482	32859911
AllCCS	[M+HCOO]-	154.681	32859911
DeepCCS	[M+H]+	149.853	30932474
DeepCCS	[M-H]-	147.258	30932474
DeepCCS	[M-2H]-	182.975	30932474
DeepCCS	[M+Na]+	157.801	30932474

Predicted Kovats Retention Indices

Derivatized

Derivative Name / Structure	SMILES	Kovats RI Value	Column Type	Reference
(9Z)-12-oxo-dodec-9-enoate,1TMS,isomer #1	C[Si](C)(C)OC=CC=CCCCCCCCC(=O)[O-]	1963.3	Semi standard non polar	33892256
(9Z)-12-oxo-dodec-9-enoate,1TMS,isomer #1	C[Si](C)(C)OC=CC=CCCCCCCCC(=O)[O-]	1825.2	Standard non polar	33892256
(9Z)-12-oxo-dodec-9-enoate,1TMS,isomer #1	C[Si](C)(C)OC=CC=CCCCCCCCC(=O)[O-]	2198.1	Standard polar	33892256
(9Z)-12-oxo-dodec-9-enoate,1TBDMS,isomer #1	CC(C)(C)[Si](C)(C)OC=CC=CCCCCCCCC(=O)[O-]	2187.4	Semi standard non polar	33892256
(9Z)-12-oxo-dodec-9-enoate,1TBDMS,isomer #1	CC(C)(C)[Si](C)(C)OC=CC=CCCCCCCCC(=O)[O-]	2028.3	Standard non polar	33892256
(9Z)-12-oxo-dodec-9-enoate,1TBDMS,isomer #1	CC(C)(C)[Si](C)(C)OC=CC=CCCCCCCCC(=O)[O-]	2305.9	Standard polar	33892256

Spectra

MS/MS Spectra

Spectrum Type	Description	Splash Key	Deposition Date	Source	View
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - (9Z)-12-oxo-dodec-9-enoate 10V, Negative-QTOF	splash10-03di-0890000000-f3a3582faa81e5e2a395	2019-02-23	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - (9Z)-12-oxo-dodec-9-enoate 20V, Negative-QTOF	splash10-029x-0930000000-c746632434b4b7fd9bc8	2019-02-23	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - (9Z)-12-oxo-dodec-9-enoate 40V, Negative-QTOF	splash10-0006-9400000000-04cd03b410c3ebdddd5c	2019-02-23	Wishart Lab	View Spectrum

Biological Properties

Cellular Locations

Not Available

Biospecimen Locations

Not Available

Tissue Locations

Not Available

Pathways

Not Available

Name	SMPDB/PathBank	KEGG

Normal Concentrations

Not Available

Abnormal Concentrations

Not Available

Associated Disorders and Diseases

Disease References

None

Associated OMIM IDs

None

External Links

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FooDB ID

FDB030135

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

Not Available

PDB ID

Not Available

ChEBI ID

Not Available

Food Biomarker Ontology

Not Available

VMH ID

Not Available

MarkerDB ID

Not Available

Good Scents ID

Not Available

References

Synthesis Reference

Not Available

Material Safety Data Sheet (MSDS)

Not Available

General References

Not Available

Showing metabocard for (9Z)-12-oxo-dodec-9-enoate (HMDB0303984)

MOL for HMDB0303984 ((9Z)-12-oxo-dodec-9-enoate)

3D MOL for HMDB0303984 ((9Z)-12-oxo-dodec-9-enoate)

3D SDF for HMDB0303984 ((9Z)-12-oxo-dodec-9-enoate)

3D-SDF for HMDB0303984 ((9Z)-12-oxo-dodec-9-enoate)

PDB for HMDB0303984 ((9Z)-12-oxo-dodec-9-enoate)

3D PDB for HMDB0303984 ((9Z)-12-oxo-dodec-9-enoate)

SMILES for HMDB0303984 ((9Z)-12-oxo-dodec-9-enoate)

INCHI for HMDB0303984 ((9Z)-12-oxo-dodec-9-enoate)

Structure for HMDB0303984 ((9Z)-12-oxo-dodec-9-enoate)

3D Structure for HMDB0303984 ((9Z)-12-oxo-dodec-9-enoate)

Predicted Collision Cross Sections

Predicted Kovats Retention Indices

Derivatized

MS/MS Spectra