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Record Information
Version5.0
StatusExpected but not Quantified
Creation Date2021-09-24 08:12:33 UTC
Update Date2021-09-24 08:12:33 UTC
HMDB IDHMDB0304230
Secondary Accession NumbersNone
Metabolite Identification
Common Name6-methoxy-3-methyl-2-all-trans-hexaprenyl-1,4-benzoquinol
Description6-methoxy-3-methyl-2-all-trans-hexaprenyl-1,4-benzoquinol, also known as 2-hexaprenyl-3-methyl-6-methoxy-1,4-benzoquinol or 5-methoxy-2-methyl-3-hexaprenylhydroquinone, is a member of the class of compounds known as 2-polyprenyl-6-methoxyphenols. 2-polyprenyl-6-methoxyphenols are compounds containing a polyisoprene chain attached at the 2-position of a 6-methoxyphenol group. 6-methoxy-3-methyl-2-all-trans-hexaprenyl-1,4-benzoquinol is practically insoluble (in water) and a very weakly acidic compound (based on its pKa). 6-methoxy-3-methyl-2-all-trans-hexaprenyl-1,4-benzoquinol can be found in a number of food items such as sweet basil, soursop, pineapple, and ohelo berry, which makes 6-methoxy-3-methyl-2-all-trans-hexaprenyl-1,4-benzoquinol a potential biomarker for the consumption of these food products. 6-methoxy-3-methyl-2-all-trans-hexaprenyl-1,4-benzoquinol may be a unique E.coli metabolite.
Structure
Thumb
Synonyms
ValueSource
2-Hexaprenyl-3-methyl-6-methoxy-1,4-benzoquinolChEBI
3-Hexaprenyl-2-methyl-5-methoxy-1,4-benzoquinolChEBI
5-Methoxy-2-methyl-3-hexaprenylhydroquinoneChEBI
5-Methoxy-2-methyl-3-hexaprenylquinolChEBI
6-Methoxy-3-methyl-2-all-trans-hexaprenyl-1,4-benzoquinolChEBI
6-Methoxy-3-methyl-2-hexaprenylhydroquinoneChEBI
6-Methoxy-3-methyl-2-hexaprenylquinolChEBI
Chemical FormulaC38H58O3
Average Molecular Weight562.879
Monoisotopic Molecular Weight562.438595728
IUPAC Name3-[(2E,6E,10E,14E,18E)-3,7,11,15,19,23-hexamethyltetracosa-2,6,10,14,18,22-hexaen-1-yl]-5-methoxy-2-methylbenzene-1,4-diol
Traditional Name3-[(2E,6E,10E,14E,18E)-3,7,11,15,19,23-hexamethyltetracosa-2,6,10,14,18,22-hexaen-1-yl]-5-methoxy-2-methylbenzene-1,4-diol
CAS Registry NumberNot Available
SMILES
[H]\C(CC\C(C)=C(/[H])CC\C(C)=C(/[H])CC\C(C)=C(/[H])CC\C(C)=C(/[H])CC1=C(C)C(O)=CC(OC)=C1O)=C(\C)CCC=C(C)C
InChI Identifier
InChI=1S/C38H58O3/c1-28(2)15-10-16-29(3)17-11-18-30(4)19-12-20-31(5)21-13-22-32(6)23-14-24-33(7)25-26-35-34(8)36(39)27-37(41-9)38(35)40/h15,17,19,21,23,25,27,39-40H,10-14,16,18,20,22,24,26H2,1-9H3/b29-17+,30-19+,31-21+,32-23+,33-25+
InChI KeyATQQULXELMEJIX-NSUIJKAQSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as 2-polyprenyl-6-methoxyphenols. 2-Polyprenyl-6-methoxyphenols are compounds containing a polyisoprene chain attached at the 2-position of a 6-methoxyphenol group.
KingdomOrganic compounds
Super ClassLipids and lipid-like molecules
ClassPrenol lipids
Sub ClassPolyprenylphenols
Direct Parent2-polyprenyl-6-methoxyphenols
Alternative Parents
Substituents
  • 2-polyprenyl-6-methoxyphenol
  • Polyprenylbenzoquinol
  • Sesterterpenoid
  • Prenylbenzoquinol
  • Methoxyphenol
  • Anisole
  • Hydroquinone
  • M-cresol
  • Phenoxy compound
  • O-cresol
  • Phenol ether
  • Methoxybenzene
  • Alkyl aryl ether
  • Phenol
  • 1-hydroxy-2-unsubstituted benzenoid
  • Toluene
  • Monocyclic benzene moiety
  • Benzenoid
  • Ether
  • Organooxygen compound
  • Organic oxygen compound
  • Hydrocarbon derivative
  • Aromatic homomonocyclic compound
Molecular FrameworkAromatic homomonocyclic compounds
External Descriptors
Ontology
Physiological effectNot Available
Disposition
Source
ProcessNot Available
RoleNot Available
Physical Properties
StateNot Available
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
logP8.69ALOGPS
logP11.75ChemAxon
logS-6.2ALOGPS
pKa (Strongest Acidic)9.98ChemAxon
pKa (Strongest Basic)-4.9ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count3ChemAxon
Hydrogen Donor Count2ChemAxon
Polar Surface Area49.69 ŲChemAxon
Rotatable Bond Count18ChemAxon
Refractivity184.78 m³·mol⁻¹ChemAxon
Polarizability71.48 ųChemAxon
Number of Rings1ChemAxon
BioavailabilityNoChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
AllCCS[M+H]+245.62332859911
AllCCS[M+H-H2O]+244.16332859911
AllCCS[M+Na]+247.35232859911
AllCCS[M+NH4]+246.96732859911
AllCCS[M-H]-228.85832859911
AllCCS[M+Na-2H]-231.88932859911
AllCCS[M+HCOO]-235.3732859911
DeepCCS[M+H]+255.42930932474
DeepCCS[M-H]-253.60430932474
DeepCCS[M-2H]-286.94230932474
DeepCCS[M+Na]+261.04530932474

Predicted Kovats Retention Indices

Not Available
Spectra

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 6-methoxy-3-methyl-2-all-trans-hexaprenyl-1,4-benzoquinol 10V, Positive-QTOFsplash10-03di-0223090000-f1d6a4aea9e7eb4b01022019-02-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 6-methoxy-3-methyl-2-all-trans-hexaprenyl-1,4-benzoquinol 20V, Positive-QTOFsplash10-00mn-1569330000-c7f577f33e28c71856c92019-02-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 6-methoxy-3-methyl-2-all-trans-hexaprenyl-1,4-benzoquinol 40V, Positive-QTOFsplash10-052b-1279410000-ae2a0e05010df8bae0652019-02-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 6-methoxy-3-methyl-2-all-trans-hexaprenyl-1,4-benzoquinol 10V, Negative-QTOFsplash10-03di-0000090000-1d878154c6f0338fc4822019-02-23Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 6-methoxy-3-methyl-2-all-trans-hexaprenyl-1,4-benzoquinol 20V, Negative-QTOFsplash10-03di-0000190000-9ec70830296fe89691982019-02-23Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 6-methoxy-3-methyl-2-all-trans-hexaprenyl-1,4-benzoquinol 40V, Negative-QTOFsplash10-0002-1300590000-ecf1341126aa6bea52a82019-02-23Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 6-methoxy-3-methyl-2-all-trans-hexaprenyl-1,4-benzoquinol 10V, Positive-QTOFsplash10-03fr-1011970000-ca033b10a6cdcb8404822021-10-21Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 6-methoxy-3-methyl-2-all-trans-hexaprenyl-1,4-benzoquinol 20V, Positive-QTOFsplash10-0019-1126910000-8634c8ee8119be149f3c2021-10-21Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 6-methoxy-3-methyl-2-all-trans-hexaprenyl-1,4-benzoquinol 40V, Positive-QTOFsplash10-0aor-1429600000-db4d2ac4b88dd2bdde342021-10-21Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 6-methoxy-3-methyl-2-all-trans-hexaprenyl-1,4-benzoquinol 10V, Negative-QTOFsplash10-03di-0000090000-6c36ab6df8a22af88fcb2021-10-21Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 6-methoxy-3-methyl-2-all-trans-hexaprenyl-1,4-benzoquinol 20V, Negative-QTOFsplash10-0r00-0622290000-1b39bed80e1ca65eebda2021-10-21Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 6-methoxy-3-methyl-2-all-trans-hexaprenyl-1,4-benzoquinol 40V, Negative-QTOFsplash10-0r0a-0944420000-ef72b60a05affa575d2b2021-10-21Wishart LabView Spectrum
Biological Properties
Cellular LocationsNot Available
Biospecimen LocationsNot Available
Tissue LocationsNot Available
Pathways
Normal Concentrations
Not Available
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDFDB030601
KNApSAcK IDNot Available
Chemspider ID26332238
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound25244096
PDB IDNot Available
ChEBI ID61473
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General ReferencesNot Available