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Record Information
Version5.0
StatusExpected but not Quantified
Creation Date2021-09-24 10:18:24 UTC
Update Date2021-09-24 10:18:24 UTC
HMDB IDHMDB0304506
Secondary Accession NumbersNone
Metabolite Identification
Common Nametrans-zeatin riboside
DescriptionTrans-zeatin riboside, also known as (E)-N-(4-hydroxy-3-methyl-2-butenyl)adenosine or 9-beta-D-ribofuranosyl-trans-zeatin, is a member of the class of compounds known as purine nucleosides. Purine nucleosides are compounds comprising a purine base attached to a ribosyl or deoxyribosyl moiety. Trans-zeatin riboside is slightly soluble (in water) and a very weakly acidic compound (based on its pKa). Trans-zeatin riboside can be found in a number of food items such as winter squash, plains prickly pear, dill, and common buckwheat, which makes trans-zeatin riboside a potential biomarker for the consumption of these food products.
Structure
Thumb
Synonyms
ValueSource
(e)-N-(4-Hydroxy-3-methyl-2-butenyl)adenosineChEBI
9-beta-D-Ribofuranosyl-trans-zeatinChEBI
9-beta-D-Ribosyl-trans-zeatinChEBI
trans-Zeatin 9-beta-D-ribofuranosideChEBI
Zeatin ribosideChEBI
9-b-D-Ribofuranosyl-trans-zeatinGenerator
9-Β-D-ribofuranosyl-trans-zeatinGenerator
9-b-D-Ribosyl-trans-zeatinGenerator
9-Β-D-ribosyl-trans-zeatinGenerator
trans-Zeatin 9-b-D-ribofuranosideGenerator
trans-Zeatin 9-β-D-ribofuranosideGenerator
RibosylzeatinMeSH
Zeatin riboside, (e)-isomerMeSH
N-(4-Hydroxy-3-methyl-2-butenyl)adenosineMeSH
Zeatin riboside, (cis-(Z))-isomerMeSH
N-[(2E)-4-Hydroxy-3-methyl-2-buten-1-yl]adenosinePhytoBank
6-(4-Hydroxy-3-methyl-trans-2-butenylamino)-9-beta-D-ribofuranosylpurinePhytoBank
6-(4-Hydroxy-3-methyl-trans-2-butenylamino)-9-β-D-ribofuranosylpurinePhytoBank
9-Ribosyl-trans-zeatinPhytoBank
9-beta-D-RibofuranosylzeatinPhytoBank
9-β-D-RibofuranosylzeatinPhytoBank
N6-(4-Hydroxy-3-methylbut-2-trans-enyl)adenosinePhytoBank
N6-(trans-4-Hydroxy-3-methylbut-2-enyl)adenosinePhytoBank
Ribosyl-trans-zeatinPhytoBank
Zeatin ribonucleosidePhytoBank
Zeatin 9-ribosidePhytoBank
Zeatin 9-beta-ribonucleosidePhytoBank
Zeatin 9-β-ribonucleosidePhytoBank
Zeatin-9-beta-D-ribofuranosidePhytoBank
Zeatin-9-β-D-ribofuranosidePhytoBank
trans-Zeatin 9-ribosidePhytoBank
trans-Zeatin ribosidePhytoBank
Chemical FormulaC15H21N5O5
Average Molecular Weight351.3577
Monoisotopic Molecular Weight351.154268807
IUPAC Name(2R,3R,4S,5R)-2-(6-{[(2E)-4-hydroxy-3-methylbut-2-en-1-yl]amino}-9H-purin-9-yl)-5-(hydroxymethyl)oxolane-3,4-diol
Traditional Nametrans-zeatin riboside
CAS Registry NumberNot Available
SMILES
C\C(CO)=C/CNC1=NC=NC2=C1N=CN2[C@@H]1O[C@H](CO)[C@@H](O)[C@H]1O
InChI Identifier
InChI=1S/C15H21N5O5/c1-8(4-21)2-3-16-13-10-14(18-6-17-13)20(7-19-10)15-12(24)11(23)9(5-22)25-15/h2,6-7,9,11-12,15,21-24H,3-5H2,1H3,(H,16,17,18)/b8-2+/t9-,11-,12-,15-/m1/s1
InChI KeyGOSWTRUMMSCNCW-HNNGNKQASA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as purine nucleosides. Purine nucleosides are compounds comprising a purine base attached to a ribosyl or deoxyribosyl moiety.
KingdomOrganic compounds
Super ClassNucleosides, nucleotides, and analogues
ClassPurine nucleosides
Sub ClassNot Available
Direct ParentPurine nucleosides
Alternative Parents
Substituents
  • Purine nucleoside
  • Glycosyl compound
  • N-glycosyl compound
  • 6-alkylaminopurine
  • 6-aminopurine
  • Pentose monosaccharide
  • Imidazopyrimidine
  • Purine
  • Aminopyrimidine
  • Secondary aliphatic/aromatic amine
  • Monosaccharide
  • N-substituted imidazole
  • Pyrimidine
  • Imidolactam
  • Tetrahydrofuran
  • Azole
  • Imidazole
  • Heteroaromatic compound
  • Secondary alcohol
  • Organoheterocyclic compound
  • Azacycle
  • Secondary amine
  • Oxacycle
  • Amine
  • Organic nitrogen compound
  • Alcohol
  • Hydrocarbon derivative
  • Organopnictogen compound
  • Organonitrogen compound
  • Organooxygen compound
  • Organic oxygen compound
  • Primary alcohol
  • Aromatic heteropolycyclic compound
Molecular FrameworkAromatic heteropolycyclic compounds
External Descriptors
Ontology
Physiological effectNot Available
Disposition
Source
Process
RoleNot Available
Physical Properties
StateNot Available
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
logP-0.39ALOGPS
logP-1.7ChemAxon
logS-1.8ALOGPS
pKa (Strongest Acidic)12.45ChemAxon
pKa (Strongest Basic)3.7ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count9ChemAxon
Hydrogen Donor Count5ChemAxon
Polar Surface Area145.78 ŲChemAxon
Rotatable Bond Count6ChemAxon
Refractivity89.58 m³·mol⁻¹ChemAxon
Polarizability36.13 ųChemAxon
Number of Rings3ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleYesChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
AllCCS[M+H]+182.52632859911
AllCCS[M+H-H2O]+179.79632859911
AllCCS[M+Na]+185.76432859911
AllCCS[M+NH4]+185.04332859911
AllCCS[M-H]-180.75832859911
AllCCS[M+Na-2H]-180.76332859911
AllCCS[M+HCOO]-180.90232859911
DeepCCS[M+H]+180.54830932474
DeepCCS[M-H]-178.15330932474
DeepCCS[M-2H]-211.12830932474
DeepCCS[M+Na]+187.23130932474

Predicted Kovats Retention Indices

Derivatized

Derivative Name / StructureSMILESKovats RI ValueColumn TypeReference
trans-zeatin riboside,5TMS,isomer #1C/C(=C\CN(C1=NC=NC2=C1N=CN2[C@@H]1O[C@H](CO[Si](C)(C)C)[C@@H](O[Si](C)(C)C)[C@H]1O[Si](C)(C)C)[Si](C)(C)C)CO[Si](C)(C)C3064.1Semi standard non polar33892256
trans-zeatin riboside,5TMS,isomer #1C/C(=C\CN(C1=NC=NC2=C1N=CN2[C@@H]1O[C@H](CO[Si](C)(C)C)[C@@H](O[Si](C)(C)C)[C@H]1O[Si](C)(C)C)[Si](C)(C)C)CO[Si](C)(C)C2950.8Standard non polar33892256
trans-zeatin riboside,5TMS,isomer #1C/C(=C\CN(C1=NC=NC2=C1N=CN2[C@@H]1O[C@H](CO[Si](C)(C)C)[C@@H](O[Si](C)(C)C)[C@H]1O[Si](C)(C)C)[Si](C)(C)C)CO[Si](C)(C)C3703.7Standard polar33892256
Spectra

GC-MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Experimental GC-MSGC-MS Spectrum - trans-zeatin riboside GC-MS (4 TMS)splash10-0udi-1960010000-d4c0888291d7c760555b2014-06-16HMDB team, MONA, MassBankView Spectrum
Experimental GC-MSGC-MS Spectrum - trans-zeatin riboside GC-MS (5 TMS)splash10-0fl0-0981000000-487416c0dd63aca8c0962014-06-16HMDB team, MONA, MassBankView Spectrum

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - trans-zeatin riboside 10V, Positive-QTOFsplash10-0fk9-1095000000-e69a8f1cb17def92a4a22019-02-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - trans-zeatin riboside 20V, Positive-QTOFsplash10-0uk9-1290000000-b738c49b8759386cef282019-02-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - trans-zeatin riboside 40V, Positive-QTOFsplash10-0fl9-9560000000-0afd15299fe7e2b97bc32019-02-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - trans-zeatin riboside 10V, Negative-QTOFsplash10-0uxr-0069000000-52a828475d9b09a90b672019-02-23Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - trans-zeatin riboside 20V, Negative-QTOFsplash10-0gb9-0390000000-8892d955975636a402632019-02-23Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - trans-zeatin riboside 40V, Negative-QTOFsplash10-001i-0920000000-093f9d902766849272772019-02-23Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - trans-zeatin riboside 10V, Positive-QTOFsplash10-0uk9-0069000000-b5ce3824980d905d017b2021-10-21Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - trans-zeatin riboside 20V, Positive-QTOFsplash10-0uk9-0591000000-e7fffc9afe48c99d4c922021-10-21Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - trans-zeatin riboside 40V, Positive-QTOFsplash10-0f79-2970000000-a00f955f9107cd2bf5262021-10-21Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - trans-zeatin riboside 10V, Negative-QTOFsplash10-0udi-0019000000-b3dfb6ba4f8af83ddf512021-10-21Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - trans-zeatin riboside 20V, Negative-QTOFsplash10-0zg0-2492000000-e3efb65eaacbf3a0c8252021-10-21Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - trans-zeatin riboside 40V, Negative-QTOFsplash10-0ue9-0960000000-4f16515a46c86a2033792021-10-21Wishart LabView Spectrum

NMR Spectra

Spectrum TypeDescriptionDeposition DateSourceView
Predicted 1D NMR13C NMR Spectrum (1D, 100 MHz, H2O, predicted)2022-08-23Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 100 MHz, H2O, predicted)2022-08-23Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 1000 MHz, H2O, predicted)2022-08-23Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 1000 MHz, H2O, predicted)2022-08-23Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 200 MHz, H2O, predicted)2022-08-23Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 200 MHz, H2O, predicted)2022-08-23Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 300 MHz, H2O, predicted)2022-08-23Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 300 MHz, H2O, predicted)2022-08-23Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 400 MHz, H2O, predicted)2022-08-23Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 400 MHz, H2O, predicted)2022-08-23Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 500 MHz, H2O, predicted)2022-08-23Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 500 MHz, H2O, predicted)2022-08-23Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 600 MHz, H2O, predicted)2022-08-23Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 600 MHz, H2O, predicted)2022-08-23Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 700 MHz, H2O, predicted)2022-08-23Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 700 MHz, H2O, predicted)2022-08-23Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 800 MHz, H2O, predicted)2022-08-23Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 800 MHz, H2O, predicted)2022-08-23Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 900 MHz, H2O, predicted)2022-08-23Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 900 MHz, H2O, predicted)2022-08-23Wishart LabView Spectrum
Biological Properties
Cellular LocationsNot Available
Biospecimen LocationsNot Available
Tissue LocationsNot Available
Pathways
Normal Concentrations
Not Available
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDFDB031214
KNApSAcK IDC00000096
Chemspider ID4945213
KEGG Compound IDC16431
BioCyc IDCPD-4208
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem CompoundNot Available
PDB IDNot Available
ChEBI ID71693
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General ReferencesNot Available