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Record Information
Version5.0
StatusExpected but not Quantified
Creation Date2021-09-24 11:21:19 UTC
Update Date2021-09-24 11:21:19 UTC
HMDB IDHMDB0304644
Secondary Accession NumbersNone
Metabolite Identification
Common NameAmpelopsin C
Description(6Z,13Z)-N-[(2S)-1,3-dihydroxyicosan-2-yl]docosa-6,13-dienimidic acid belongs to the class of organic compounds known as secondary alcohols. Secondary alcohols are compounds containing a secondary alcohol functional group, with the general structure HOC(R)(R') (R,R'=alkyl, aryl). Based on a literature review very few articles have been published on (6Z,13Z)-N-[(2S)-1,3-dihydroxyicosan-2-yl]docosa-6,13-dienimidic acid.
Structure
Thumb
Synonyms
ValueSource
(6Z,13Z)-N-[(2S)-1,3-Dihydroxyicosan-2-yl]docosa-6,13-dienimidateGenerator
Chemical FormulaC42H81NO3
Average Molecular Weight648.114
Monoisotopic Molecular Weight647.621645472
IUPAC Name(6Z,13Z)-N-[(2S)-1,3-dihydroxyicosan-2-yl]docosa-6,13-dienamide
Traditional Name(6Z,13Z)-N-[(2S)-1,3-dihydroxyicosan-2-yl]docosa-6,13-dienamide
CAS Registry NumberNot Available
SMILES
CCCCCCCCCCCCCCCCCC(O)[C@H](CO)NC(=O)CCCC\C=C/CCCCC\C=C/CCCCCCCC
InChI Identifier
InChI=1S/C42H81NO3/c1-3-5-7-9-11-13-15-17-19-20-21-22-24-26-28-30-32-34-36-38-42(46)43-40(39-44)41(45)37-35-33-31-29-27-25-23-18-16-14-12-10-8-6-4-2/h17,19,28,30,40-41,44-45H,3-16,18,20-27,29,31-39H2,1-2H3,(H,43,46)/b19-17-,30-28-/t40-,41?/m0/s1
InChI KeyABZIJOKCYYZWFJ-QWKKJKGWSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as secondary alcohols. Secondary alcohols are compounds containing a secondary alcohol functional group, with the general structure HOC(R)(R') (R,R'=alkyl, aryl).
KingdomOrganic compounds
Super ClassOrganic oxygen compounds
ClassOrganooxygen compounds
Sub ClassAlcohols and polyols
Direct ParentSecondary alcohols
Alternative Parents
Substituents
  • Secondary alcohol
  • Organic 1,3-dipolar compound
  • Propargyl-type 1,3-dipolar organic compound
  • Carboximidic acid derivative
  • Carboximidic acid
  • Organic nitrogen compound
  • Organopnictogen compound
  • Hydrocarbon derivative
  • Primary alcohol
  • Organonitrogen compound
  • Aliphatic acyclic compound
Molecular FrameworkAliphatic acyclic compounds
External DescriptorsNot Available
Ontology
Physiological effectNot Available
Disposition
ProcessNot Available
RoleNot Available
Physical Properties
StateNot Available
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
logP10.44ALOGPS
logP13.9ChemAxon
logS-7.6ALOGPS
pKa (Strongest Acidic)13.81ChemAxon
pKa (Strongest Basic)-1ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count3ChemAxon
Hydrogen Donor Count3ChemAxon
Polar Surface Area69.56 ŲChemAxon
Rotatable Bond Count37ChemAxon
Refractivity203.85 m³·mol⁻¹ChemAxon
Polarizability87.43 ųChemAxon
Number of Rings0ChemAxon
BioavailabilityNoChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
AllCCS[M+H]+278.26132859911
AllCCS[M+H-H2O]+277.89732859911
AllCCS[M+Na]+278.6532859911
AllCCS[M+NH4]+278.56732859911
AllCCS[M-H]-263.34832859911
AllCCS[M+Na-2H]-268.87232859911
AllCCS[M+HCOO]-275.0232859911
DeepCCS[M+H]+273.87630932474
DeepCCS[M-H]-271.51830932474
DeepCCS[M-2H]-304.40330932474
DeepCCS[M+Na]+279.96930932474

Predicted Kovats Retention Indices

Derivatized

Derivative Name / StructureSMILESKovats RI ValueColumn TypeReference
Ampelopsin C,3TMS,isomer #1CCCCCCCC/C=C\CCCCC/C=C\CCCCC(=O)N([C@@H](CO[Si](C)(C)C)C(CCCCCCCCCCCCCCCCC)O[Si](C)(C)C)[Si](C)(C)C4806.1Semi standard non polar33892256
Ampelopsin C,3TMS,isomer #1CCCCCCCC/C=C\CCCCC/C=C\CCCCC(=O)N([C@@H](CO[Si](C)(C)C)C(CCCCCCCCCCCCCCCCC)O[Si](C)(C)C)[Si](C)(C)C4523.5Standard non polar33892256
Ampelopsin C,3TMS,isomer #1CCCCCCCC/C=C\CCCCC/C=C\CCCCC(=O)N([C@@H](CO[Si](C)(C)C)C(CCCCCCCCCCCCCCCCC)O[Si](C)(C)C)[Si](C)(C)C4455.0Standard polar33892256
Spectra

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Ampelopsin C 10V, Positive-QTOFsplash10-01q9-0004009000-4c37b6df9cb14c0fa7992019-02-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Ampelopsin C 20V, Positive-QTOFsplash10-03di-1039015000-cd3d61d2dcd75590d9842019-02-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Ampelopsin C 40V, Positive-QTOFsplash10-01ox-2293330000-4d6f0086e433e594f7fd2019-02-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Ampelopsin C 10V, Negative-QTOFsplash10-0002-0001009000-6ae65b5b927d4f3b37df2019-02-23Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Ampelopsin C 20V, Negative-QTOFsplash10-02bb-0019026000-ab313fed3de9314882b12019-02-23Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Ampelopsin C 40V, Negative-QTOFsplash10-06ry-7159000000-72dec8e5b6ba93a0cc812019-02-23Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Ampelopsin C 10V, Positive-QTOFsplash10-0002-0000009000-8034b399a95d3586d3662021-10-21Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Ampelopsin C 20V, Positive-QTOFsplash10-0005-0050009000-785eab6ea462de30030e2021-10-21Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Ampelopsin C 40V, Positive-QTOFsplash10-01po-0085009000-70f522c4571402e3936a2021-10-21Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Ampelopsin C 10V, Positive-QTOFsplash10-0udi-0000009000-31264534e837f791da652021-10-21Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Ampelopsin C 20V, Positive-QTOFsplash10-0udi-0000009000-31264534e837f791da652021-10-21Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Ampelopsin C 40V, Positive-QTOFsplash10-000i-0000009000-68b46d0682c146d495b72021-10-21Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Ampelopsin C 10V, Negative-QTOFsplash10-0002-0000009000-99b30254d9b8ff6d778b2021-10-21Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Ampelopsin C 20V, Negative-QTOFsplash10-0002-0001009000-31f0b96ad1bbd84d55ee2021-10-21Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Ampelopsin C 40V, Negative-QTOFsplash10-03dj-0004009000-c588fe94b61a2e0870782021-10-21Wishart LabView Spectrum
Biological Properties
Cellular LocationsNot Available
Biospecimen LocationsNot Available
Tissue LocationsNot Available
Pathways
Normal Concentrations
Not Available
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDNot Available
KNApSAcK IDNot Available
Chemspider IDNot Available
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem CompoundNot Available
PDB IDNot Available
ChEBI IDNot Available
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General ReferencesNot Available