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Record Information
Version5.0
StatusExpected but not Quantified
Creation Date2021-09-24 21:19:45 UTC
Update Date2021-09-24 21:19:46 UTC
HMDB IDHMDB0304899
Secondary Accession NumbersNone
Metabolite Identification
Common NameTrilaciclib
Description12'-{[5-(4-methylpiperazin-1-yl)pyridin-2-yl]imino}-2',5',11',13'-tetraazaspiro[cyclohexane-1,3'-tricyclo[7.4.0.0²,⁷]tridecane]-1'(13'),7',9'-trien-6'-one belongs to the class of organic compounds known as pyridinylpiperazines. Pyridinylpiperazines are compounds containing a pyridinylpiperazine skeleton, which consists of a pyridine linked (not fused) to a piperazine by a bond by a single bond that is not part of a ring. Based on a literature review very few articles have been published on 12'-{[5-(4-methylpiperazin-1-yl)pyridin-2-yl]imino}-2',5',11',13'-tetraazaspiro[cyclohexane-1,3'-tricyclo[7.4.0.0²,⁷]tridecane]-1'(13'),7',9'-trien-6'-one.
Structure
Thumb
Synonyms
ValueSource
2'-((5-(4-Methyl-1-piperazinyl)-2-pyridinyl)amino)-7',8'-dihydro-6'H-spiro(cyclohexane-1,9'-pyrazino(1',2':1,5)pyrrolo(2,3-D)pyrimidin)-6'-oneMeSH
CoselaMeSH
Chemical FormulaC24H30N8O
Average Molecular Weight446.559
Monoisotopic Molecular Weight446.254257618
IUPAC Name12'-{[5-(4-methylpiperazin-1-yl)pyridin-2-yl]amino}-2',5',11',13'-tetraazaspiro[cyclohexane-1,3'-tricyclo[7.4.0.0^{2,7}]tridecane]-1'(9'),7',10',12'-tetraen-6'-one
Traditional Name12'-{[5-(4-methylpiperazin-1-yl)pyridin-2-yl]amino}-2',5',11',13'-tetraazaspiro[cyclohexane-1,3'-tricyclo[7.4.0.0^{2,7}]tridecane]-1'(9'),7',10',12'-tetraen-6'-one
CAS Registry NumberNot Available
SMILES
CN1CCN(CC1)C1=CN=C(NC2=NC3=C(C=C4N3C3(CCCCC3)CNC4=O)C=N2)C=C1
InChI Identifier
InChI=1S/C24H30N8O/c1-30-9-11-31(12-10-30)18-5-6-20(25-15-18)28-23-26-14-17-13-19-22(33)27-16-24(7-3-2-4-8-24)32(19)21(17)29-23/h5-6,13-15H,2-4,7-12,16H2,1H3,(H,27,33)(H,25,26,28,29)
InChI KeyPDGKHKMBHVFCMG-UHFFFAOYSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as pyridinylpiperazines. Pyridinylpiperazines are compounds containing a pyridinylpiperazine skeleton, which consists of a pyridine linked (not fused) to a piperazine by a bond by a single bond that is not part of a ring.
KingdomOrganic compounds
Super ClassOrganoheterocyclic compounds
ClassDiazinanes
Sub ClassPiperazines
Direct ParentPyridinylpiperazines
Alternative Parents
Substituents
  • N-arylpiperazine
  • Pyridinylpiperazine
  • Pyrrolo[2,3-d]pyrimidine
  • Pyrrolopyrimidine
  • 2-heteroaryl carboxamide
  • Dialkylarylamine
  • Tertiary aliphatic/aromatic amine
  • N-alkylpiperazine
  • N-methylpiperazine
  • Aminopyrimidine
  • Aminopyridine
  • Imidolactam
  • Pyrimidine
  • Pyridine
  • Heteroaromatic compound
  • Pyrrole
  • Tertiary aliphatic amine
  • Tertiary amine
  • Secondary carboxylic acid amide
  • Lactam
  • Carboxamide group
  • Amino acid or derivatives
  • Azacycle
  • Secondary amine
  • Carboxylic acid derivative
  • Organic nitrogen compound
  • Organic oxygen compound
  • Organopnictogen compound
  • Organic oxide
  • Hydrocarbon derivative
  • Organooxygen compound
  • Organonitrogen compound
  • Amine
  • Aromatic heteropolycyclic compound
Molecular FrameworkAromatic heteropolycyclic compounds
External DescriptorsNot Available
Ontology
Physiological effectNot Available
DispositionNot Available
ProcessNot Available
RoleNot Available
Physical Properties
StateNot Available
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
logP2.85ALOGPS
logP2.74ChemAxon
logS-3.2ALOGPS
pKa (Strongest Acidic)11.59ChemAxon
pKa (Strongest Basic)7.65ChemAxon
Physiological Charge1ChemAxon
Hydrogen Acceptor Count7ChemAxon
Hydrogen Donor Count2ChemAxon
Polar Surface Area91.21 ŲChemAxon
Rotatable Bond Count3ChemAxon
Refractivity128.51 m³·mol⁻¹ChemAxon
Polarizability50.52 ųChemAxon
Number of Rings6ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterYesChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
AllCCS[M+H]+206.97932859911
AllCCS[M+H-H2O]+205.06732859911
AllCCS[M+Na]+209.22332859911
AllCCS[M+NH4]+208.72632859911
AllCCS[M-H]-196.83632859911
AllCCS[M+Na-2H]-197.45832859911
AllCCS[M+HCOO]-198.28732859911
DeepCCS[M+H]+210.81830932474
DeepCCS[M-H]-208.4630932474
DeepCCS[M-2H]-241.6930932474
DeepCCS[M+Na]+216.91830932474

Predicted Kovats Retention Indices

Derivatized

Derivative Name / StructureSMILESKovats RI ValueColumn TypeReference
Trilaciclib,1TMS,isomer #1CN1CCN(C2=CC=C(N(C3=NC=C4C=C5C(=O)NCC6(CCCCC6)N5C4=N3)[Si](C)(C)C)N=C2)CC14222.6Semi standard non polar33892256
Trilaciclib,1TMS,isomer #1CN1CCN(C2=CC=C(N(C3=NC=C4C=C5C(=O)NCC6(CCCCC6)N5C4=N3)[Si](C)(C)C)N=C2)CC14136.2Standard non polar33892256
Trilaciclib,1TMS,isomer #1CN1CCN(C2=CC=C(N(C3=NC=C4C=C5C(=O)NCC6(CCCCC6)N5C4=N3)[Si](C)(C)C)N=C2)CC15629.2Standard polar33892256
Trilaciclib,1TMS,isomer #2CN1CCN(C2=CC=C(NC3=NC=C4C=C5C(=O)N([Si](C)(C)C)CC6(CCCCC6)N5C4=N3)N=C2)CC14316.7Semi standard non polar33892256
Trilaciclib,1TMS,isomer #2CN1CCN(C2=CC=C(NC3=NC=C4C=C5C(=O)N([Si](C)(C)C)CC6(CCCCC6)N5C4=N3)N=C2)CC14099.6Standard non polar33892256
Trilaciclib,1TMS,isomer #2CN1CCN(C2=CC=C(NC3=NC=C4C=C5C(=O)N([Si](C)(C)C)CC6(CCCCC6)N5C4=N3)N=C2)CC15571.2Standard polar33892256
Trilaciclib,2TMS,isomer #1CN1CCN(C2=CC=C(N(C3=NC=C4C=C5C(=O)N([Si](C)(C)C)CC6(CCCCC6)N5C4=N3)[Si](C)(C)C)N=C2)CC14113.5Semi standard non polar33892256
Trilaciclib,2TMS,isomer #1CN1CCN(C2=CC=C(N(C3=NC=C4C=C5C(=O)N([Si](C)(C)C)CC6(CCCCC6)N5C4=N3)[Si](C)(C)C)N=C2)CC14100.0Standard non polar33892256
Trilaciclib,2TMS,isomer #1CN1CCN(C2=CC=C(N(C3=NC=C4C=C5C(=O)N([Si](C)(C)C)CC6(CCCCC6)N5C4=N3)[Si](C)(C)C)N=C2)CC15240.3Standard polar33892256
Trilaciclib,1TBDMS,isomer #1CN1CCN(C2=CC=C(N(C3=NC=C4C=C5C(=O)NCC6(CCCCC6)N5C4=N3)[Si](C)(C)C(C)(C)C)N=C2)CC14380.8Semi standard non polar33892256
Trilaciclib,1TBDMS,isomer #1CN1CCN(C2=CC=C(N(C3=NC=C4C=C5C(=O)NCC6(CCCCC6)N5C4=N3)[Si](C)(C)C(C)(C)C)N=C2)CC14362.7Standard non polar33892256
Trilaciclib,1TBDMS,isomer #1CN1CCN(C2=CC=C(N(C3=NC=C4C=C5C(=O)NCC6(CCCCC6)N5C4=N3)[Si](C)(C)C(C)(C)C)N=C2)CC15714.2Standard polar33892256
Trilaciclib,1TBDMS,isomer #2CN1CCN(C2=CC=C(NC3=NC=C4C=C5C(=O)N([Si](C)(C)C(C)(C)C)CC6(CCCCC6)N5C4=N3)N=C2)CC14488.5Semi standard non polar33892256
Trilaciclib,1TBDMS,isomer #2CN1CCN(C2=CC=C(NC3=NC=C4C=C5C(=O)N([Si](C)(C)C(C)(C)C)CC6(CCCCC6)N5C4=N3)N=C2)CC14336.2Standard non polar33892256
Trilaciclib,1TBDMS,isomer #2CN1CCN(C2=CC=C(NC3=NC=C4C=C5C(=O)N([Si](C)(C)C(C)(C)C)CC6(CCCCC6)N5C4=N3)N=C2)CC15719.3Standard polar33892256
Trilaciclib,2TBDMS,isomer #1CN1CCN(C2=CC=C(N(C3=NC=C4C=C5C(=O)N([Si](C)(C)C(C)(C)C)CC6(CCCCC6)N5C4=N3)[Si](C)(C)C(C)(C)C)N=C2)CC14459.1Semi standard non polar33892256
Trilaciclib,2TBDMS,isomer #1CN1CCN(C2=CC=C(N(C3=NC=C4C=C5C(=O)N([Si](C)(C)C(C)(C)C)CC6(CCCCC6)N5C4=N3)[Si](C)(C)C(C)(C)C)N=C2)CC14528.0Standard non polar33892256
Trilaciclib,2TBDMS,isomer #1CN1CCN(C2=CC=C(N(C3=NC=C4C=C5C(=O)N([Si](C)(C)C(C)(C)C)CC6(CCCCC6)N5C4=N3)[Si](C)(C)C(C)(C)C)N=C2)CC15362.7Standard polar33892256
Spectra

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Trilaciclib 10V, Positive-QTOFsplash10-0002-0000900000-e85b813bf490945e8dd72021-10-11Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Trilaciclib 20V, Positive-QTOFsplash10-0002-0002900000-f692b698ed993af49d592021-10-11Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Trilaciclib 40V, Positive-QTOFsplash10-03di-1109400000-f7e2b1854c19eaf570fb2021-10-11Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Trilaciclib 10V, Negative-QTOFsplash10-0002-0000900000-c1d4adc4e022a6bf58472021-10-11Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Trilaciclib 20V, Negative-QTOFsplash10-0002-0000900000-d001dd2edee98f8f39382021-10-11Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Trilaciclib 40V, Negative-QTOFsplash10-02mi-1069300000-dfaf6db6a4265e3a005b2021-10-11Wishart LabView Spectrum
Biological Properties
Cellular LocationsNot Available
Biospecimen LocationsNot Available
Tissue LocationsNot Available
Pathways
Normal Concentrations
Not Available
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDNot Available
KNApSAcK IDNot Available
Chemspider ID58825997
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem CompoundNot Available
PDB IDNot Available
ChEBI IDNot Available
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General ReferencesNot Available