Legend: enzyme field
| Version | 2.5 | ||||||||||||||||||
| Creation Date | 2006-05-22 16:12:41 | ||||||||||||||||||
| Update Date | 2010-04-24 14:47:31 | ||||||||||||||||||
| Accession Number | HMDB03213 | ||||||||||||||||||
| Secondary Accession Numbers | Not Available | ||||||||||||||||||
| Common Name | Raffinose | ||||||||||||||||||
| Description | Trisaccharide A trisaccharide occurring in Australian manna (from Eucalyptus spp, Myrtaceae) and in cottonseed meal. -- Pubchem; Raffinose is a complex carbohydrate, a trisaccharide composed of galactose, fructose, and glucose. It can be found in beans, cabbage, brussels sprouts, broccoli, asparagus, other vegetables, and whole grains. Raffinose is hydrolysed to D-galactose and sucrose by D-galactosidase (D-GAL) (1). D-GAL also hydrolyses other D-galactosides such as stachyose, verbascose, and galactinol [1-O-(D-galactosyl)-myoinositol], if present. The enzyme does not cleave linked galactose, as in lactose. -- Wikipedia; Raffinose is also known as melitose and may be thought of as galactose + sucrose connected via an alpha(1-6) glycosidic linkage and so raffinose can be broken apart into galactose and sucrose via the enzyme alpha-galactosidase. Human intestines do not contain this enzyme. -- Wikipedia | ||||||||||||||||||
| Synonyms |
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| Chemical IUPAC Name | (3R,4S,5S,6R)-2-[[(2R,3R,4S,5R)-6-[(2S,3S,4R,5R)-3,4-dihydroxy-2,5-bis(hydroxymethyl)oxolan-2-yl]oxy-3,4,5-trihydroxy-oxan-2-yl]methoxy]-6-(hydroxymethyl)oxane-3,4,5-triol | ||||||||||||||||||
| Chemical Formula | C18H32O16 | ||||||||||||||||||
| Chemical Structure | |||||||||||||||||||
| Chemical Taxonomy |
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| Average Molecular Weight | 504.437 | ||||||||||||||||||
| Monoisotopic Molecular Weight | 504.169037 | ||||||||||||||||||
| Isomeric SMILES | OC[C@H]1OC(OC[C@H]2OC(O[C@]3(CO)O[C@H](CO)[C@@H](O)[C@@H]3O)[C@H](O)[C@@H](O)[C@@H]2O)[C@H](O)[C@@H](O)[C@H]1O | ||||||||||||||||||
| Canonical SMILES | OCC1OC(OCC2OC(OC3(CO)OC(CO)C(O)C3O)C(O)C(O)C2O)C(O)C(O)C1O | ||||||||||||||||||
| KEGG Compound ID | C00492 ![]() |
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| BioCyc ID | CPD-169 ![]() |
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| BiGG ID | Not Available | ||||||||||||||||||
| Wikipedia Link | Raffinose ![]() |
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| NuGOwiki Link | HMDB03213 ![]() |
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| Metagene Link | HMDB03213 ![]() |
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| METLIN ID | 138 ![]() |
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| PubChem Compound | 10542 ![]() |
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| PubChem Substance | 10626906 ![]() |
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| ChEBI ID | 16634 ![]() |
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| CAS Registry Number | 512-69-6 | ||||||||||||||||||
| InChI Identifier | InChI=1/C18H32O16/c19-1-5-8(22)11(25)13(27)16(31-5)30-3-7-9(23)12(26)14(28)17(32-7)34-18(4-21)15(29)10(24)6(2-20)33-18/h5-17,19-29H,1-4H2/t5-,6-,7-,8+,9-,10-,11+,12+,13-,14-,15+,16?,17?,18+/m1/s1 | ||||||||||||||||||
| Synthesis Reference | Not Available | ||||||||||||||||||
| Melting Point (Experimental) | 80 oC | ||||||||||||||||||
| Experimental Water Solubility | 203 mg/mL [YALKOWSKY,SH & DANNENFELSER,RM (1992)] Source: PhysProp | ||||||||||||||||||
| Predicted Water Solubility | 669.0 mg/mL [Predicted by ALOGPS] Calculated using ALOGPS | ||||||||||||||||||
| Physiological Charge | 0 | ||||||||||||||||||
| State | Solid | ||||||||||||||||||
| Experimental LogP/Hydrophobicity | Not Available Source: PhysProp | ||||||||||||||||||
| Predicted LogP/Hydrophobicity | -3.36 [Predicted by ALOGPS]; -5.9 [Predicted by PubChem via XLOGP]; -6.76 [MEYLAN,WM & HOWARD,PH (1995)] Calculated using ALOGPS | ||||||||||||||||||
| Material Safety Data Sheet (MSDS) | |||||||||||||||||||
| MOL File | Show | ||||||||||||||||||
| SDF File | Show | ||||||||||||||||||
| PDB File | Show | ||||||||||||||||||
| 2D Structure | |||||||||||||||||||
| 3D Structure | |||||||||||||||||||
| Experimental PDB ID | Not Available | ||||||||||||||||||
| Experimental 1H NMR Spectrum | Download Spectrum Download FID (Bruker) Show Experimental Conditions ![]() |
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| Experimental 13C NMR Spectrum | Not Available | ||||||||||||||||||
| Experimental 13C HSQC Spectrum | Download Spectrum Download FID (Bruker) Show Experimental Conditions ![]() |
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| Predicted 1H NMR Spectrum |
Show Image Show Peaklist |
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| Predicted 13C NMR Spectrum |
Show Image Show Peaklist |
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| Mass Spectrum | Not Available | ||||||||||||||||||
| Simplified TOCSY Spectrum | Not Available | ||||||||||||||||||
| BMRB Spectrum | Not Available | ||||||||||||||||||
| Cellular Location |
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| Biofluid Location |
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| Tissue Location |
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| Concentrations (Normal) |
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| Concentrations (Abnormal) | Not Available | ||||||||||||||||||
| Associated Disorders | Not Available | ||||||||||||||||||
| OMIM ID | Not Available | ||||||||||||||||||
| Pathways |
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| General References |
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| Metabolic Enzymes |
| Enzyme 1 [top] | |||||||
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| Enzyme 1 ID | 5997 | ||||||
| Enzyme 1 Name | Alpha-galactosidase A precursor | ||||||
| Enzyme 1 Synonyms |
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| Enzyme 1 Gene Name | GLA | ||||||
| Enzyme 1 Protein Sequence |
>Alpha-galactosidase A precursor
MQLRNPELHLGCALALRFLALVSWDIPGARALDNGLARTPTMGWLHWERFMCNLDCQEEP DSCISEKLFMEMAELMVSEGWKDAGYEYLCIDDCWMAPQRDSEGRLQADPQRFPHGIRQL ANYVHSKGLKLGIYADVGNKTCAGFPGSFGYYDIDAQTFADWGVDLLKFDGCYCDSLENL ADGYKHMSLALNRTGRSIVYSCEWPLYMWPFQKPNYTEIRQYCNHWRNFADIDDSWKSIK SILDWTSFNQERIVDVAGPGGWNDPDMLVIGNFGLSWNQQVTQMALWAIMAAPLFMSNDL RHISPQAKALLQDKDVIAINQDPLGKQGYQLRQGDNFEVWERPLSGLAWAVAMINRQEIG GPRSYTIAVASLGKGVACNPACFITQLLPVKRKLGFYEWTSRLRSHINPTGTVLLQLENT MQMSLKDLL |
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| Enzyme 1 Number of Residues | 429 | ||||||
| Enzyme 1 Molecular Weight | 48767 | ||||||
| Enzyme 1 Theoretical pI | 5.27 | ||||||
| Enzyme 1 GO Classification |
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| Enzyme 1 General Function | Not Available | ||||||
| Enzyme 1 Specific Function | Hydrolysis of terminal, non-reducing alpha-D- galactose residues in alpha-D-galactosides, including galactose oligosaccharides, galactomannans and galactohydrolase | ||||||
| Enzyme 1 Pathways | |||||||
| Enzyme 1 Reactions |
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| Enzyme 1 Pfam Domain Function |
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| Enzyme 1 Signals |
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| Enzyme 1 Transmembrane Regions | Not Available | ||||||
| Enzyme 1 Essentiality | Not Available | ||||||
| Enzyme 1 GenBank ID Protein | 757912 ![]() |
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| Enzyme 1 UniProtKB/Swiss-Prot ID | P06280 ![]() |
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| Enzyme 1 UniProtKB/Swiss-Prot Entry Name | AGAL_HUMAN ![]() |
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| Enzyme 1 PDB ID | 1R47 ![]() |
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| Enzyme 1 PDB File | Show | ||||||
| Enzyme 1 3D Structure | |||||||
| Enzyme 1 Cellular Location | Not Available | ||||||
| Enzyme 1 Gene Sequence |
>1290 bp
ATGCAGCTGAGGAACCCAGAACTACATCTGGGCTGCGCGCTTGCGCTTCGCTTCCTGGCC CTCGTTTCCTGGGACATCCCTGGGGCTAGAGCACTGGACAATGGATTGGCAAGGACGCCT ACCATGGGCTGGCTGCACTGGGAGCGCTTCATGTGCAACCTTGACTGCCAGGAAGAGCCA GATTCCTGCATCAGTGAGAAGCTCTTCATGGAGATGGCAGAGCTCATGGTCTCAGAAGGC TGGAAGGATGCAGGTTATGAGTACCTCTGCATTGATGACTGTTGGATGGCTCCCCAAAGA GATTCAGAAGGCAGACTTCAGGCAGACCCTCAGCGCTTTCCTCATGGGATTCGCCAGCTA GCTAATTATGTTCACAGCAAAGGACTGAAGCTAGGGATTTATGCAGATGTTGGAAATAAA ACCTGCGCAGGCTTCCCTGGGAGTTTTGGATACTACGACATTGATGCCCAGACCTTTGCT GACTGGGGAGTAGATCTGCTAAAATTTGATGGTTGTTACTGTGACAGTTTGGAAAATTTG GCAGATGGTTATAAGCACATGTCCTTGGCCCTGAATAGGACTGGCAGAAGCATTGTGTAC TCCTGTGAGTGGCCTCTTTATATGTGGCCCTTTCAAAAGCCCAATTATACAGAAATCCGA CAGTACTGCAATCACTGGCGAAATTTTGCTGACATTGATGATTCCTGGAAAAGTATAAAG AGTATCTTGGACTGGACATCTTTTAACCAGGAGAGAATTGTTGATGTTGCTGGACCAGGG GGTTGGAATGACCCAGATATGTTAGTGATTGGCAACTTTGGCCTCAGCTGGAATCAGCAA GTAACTCAGATGGCCCTCTGGGCTATCATGGCTGCTCCTTTATTCATGTCTAATGACCTC CGACACATCAGCCCTCAAGCCAAAGCTCTCCTTCAGGATAAGGACGTAATTGCCATCAAT CAGGACCCCTTGGGCAAGCAAGGGTACCAGCTTAGACAGGGAGACAACTTTGAAGTGTGG GAACGACCTCTCTCAGGCTTAGCCTGGGCTGTAGCTATGATAAACCGGCAGGAGATTGGT GGACCTCGCTCTTATACCATCGCAGTTGCTTCCCTGGGTAAAGGAGTGGCCTGTAATCCT GCCTGCTTCATCACACAGCTCCTCCCTGTGAAAAGGAAGCTAGGGTTCTATGAATGGACT TCAAGGTTAAGAAGTCACATAAATCCCACAGGCACTGTTTTGCTTCAGCTAGAAAATACA ATGCAGATGTCATTAAAAGACTTACTTTAA |
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| Enzyme 1 GenBank Gene ID | X05790 ![]() |
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| Enzyme 1 GeneCard ID | GLA ![]() |
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| Enzyme 1 GenAtlas ID | GLA ![]() |
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| Enzyme 1 HGNC ID | HGNC:4296 ![]() |
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| Enzyme 1 Chromosome Location | X | ||||||
| Enzyme 1 Locus | Xq22 | ||||||
| Enzyme 1 SNPs | SNPJam Report ![]() |
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| Enzyme 1 General References |
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| Enzyme 1 Metabolite References | Not Available | ||||||