Record Information |
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Version | 5.0 |
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Status | Detected but not Quantified |
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Creation Date | 2007-05-22 18:00:08 UTC |
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Update Date | 2022-03-07 02:49:30 UTC |
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HMDB ID | HMDB0006221 |
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Secondary Accession Numbers | |
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Metabolite Identification |
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Common Name | 13-cis Retinol |
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Description | 13-cis Retinol is a retinoid inapplicable to the visual processes, and therefore it could be an important catabolic metabolite and its biosynthesis could be part of a process involved in regulating 11-cis-retinol concentrations within the retinal pigment epithelium of 11-cis-retinol dehydrogenase. 13-cis Retinol accumulates as a consequence of reduced 11-cis-retinol oxidation capacity. Reduced 11-cis-retinol oxidation occurs in 11-cis-Retinol dehydrogenase deficiency. Mutations in the 11-cis-retinol dehydrogenase gene in humans have been associated with fundus albipunctatus (delayed dark adaptation and punctata are typical symptoms of this human hereditary ocular disease). (PMID: 10825191 ). |
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Structure | C\C(=C\CO)\C=C\C=C(/C)\C=C\C1=C(C)CCCC1(C)C InChI=1S/C20H30O/c1-16(8-6-9-17(2)13-15-21)11-12-19-18(3)10-7-14-20(19,4)5/h6,8-9,11-13,21H,7,10,14-15H2,1-5H3/b9-6+,12-11+,16-8+,17-13- |
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Synonyms | Value | Source |
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(13cis)-Retinol | ChEBI | (2Z,4E,6E,8E)-3,7-Dimethyl-9-(2,6,6-trimethylcyclohex-1-en-1-yl)nona-2,4,6,8-tetraen-1-ol | ChEBI | RETINOL | ChEBI | Neovitamin a | Kegg | (11-cis,13-cis)-Retinol acetate | HMDB | 11,13-Di-cis-vitamin a acetate | HMDB | 11-cis-13-cis-Retinol acetate | HMDB | 11-cis-13-cis-Retinyl acetate | HMDB |
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Chemical Formula | C20H30O |
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Average Molecular Weight | 286.4516 |
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Monoisotopic Molecular Weight | 286.229665582 |
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IUPAC Name | (2Z,4E,6E,8E)-3,7-dimethyl-9-(2,6,6-trimethylcyclohex-1-en-1-yl)nona-2,4,6,8-tetraen-1-ol |
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Traditional Name | 13-cis retinol |
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CAS Registry Number | 2052-63-3 |
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SMILES | C\C(=C\CO)\C=C\C=C(/C)\C=C\C1=C(C)CCCC1(C)C |
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InChI Identifier | InChI=1S/C20H30O/c1-16(8-6-9-17(2)13-15-21)11-12-19-18(3)10-7-14-20(19,4)5/h6,8-9,11-13,21H,7,10,14-15H2,1-5H3/b9-6+,12-11+,16-8+,17-13- |
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InChI Key | FPIPGXGPPPQFEQ-HWCYFHEPSA-N |
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Chemical Taxonomy |
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Description | Belongs to the class of organic compounds known as retinoids. These are oxygenated derivatives of 3,7-dimethyl-1-(2,6,6-trimethylcyclohex-1-enyl)nona-1,3,5,7-tetraene and derivatives thereof. |
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Kingdom | Organic compounds |
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Super Class | Lipids and lipid-like molecules |
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Class | Prenol lipids |
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Sub Class | Retinoids |
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Direct Parent | Retinoids |
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Alternative Parents | |
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Substituents | - Retinoid skeleton
- Diterpenoid
- Fatty alcohol
- Fatty acyl
- Organic oxygen compound
- Hydrocarbon derivative
- Primary alcohol
- Organooxygen compound
- Alcohol
- Aliphatic homomonocyclic compound
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Molecular Framework | Aliphatic homomonocyclic compounds |
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External Descriptors | |
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Ontology |
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Physiological effect | Not Available |
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Disposition | |
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Process | Not Available |
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Role | Not Available |
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Physical Properties |
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State | Solid |
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Experimental Molecular Properties | Property | Value | Reference |
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Melting Point | Not Available | Not Available | Boiling Point | Not Available | Not Available | Water Solubility | Not Available | Not Available | LogP | Not Available | Not Available |
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Experimental Chromatographic Properties | Not Available |
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Predicted Molecular Properties | |
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Predicted Chromatographic Properties | Predicted Collision Cross SectionsPredicted Kovats Retention IndicesUnderivatizedDerivatized |
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| GC-MS SpectraSpectrum Type | Description | Splash Key | Deposition Date | Source | View |
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Predicted GC-MS | Predicted GC-MS Spectrum - 13-cis Retinol GC-MS (Non-derivatized) - 70eV, Positive | splash10-00di-1190000000-346a3e44c44d46353e80 | 2017-09-01 | Wishart Lab | View Spectrum | Predicted GC-MS | Predicted GC-MS Spectrum - 13-cis Retinol GC-MS (1 TMS) - 70eV, Positive | splash10-0006-7139000000-7242603c3f7f12c824cd | 2017-10-06 | Wishart Lab | View Spectrum | Predicted GC-MS | Predicted GC-MS Spectrum - 13-cis Retinol GC-MS (Non-derivatized) - 70eV, Positive | Not Available | 2021-10-12 | Wishart Lab | View Spectrum | MS | Mass Spectrum (Electron Ionization) | splash10-052r-2950000000-c24ec8ff8d0ba6c1f23f | 2018-05-25 | Not Available | View Spectrum |
MS/MS SpectraSpectrum Type | Description | Splash Key | Deposition Date | Source | View |
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Experimental LC-MS/MS | LC-MS/MS Spectrum - 13-cis Retinol Quattro_QQQ 10V, Positive-QTOF (Annotated) | splash10-000i-0290000000-25c523b646154b291da8 | 2018-05-25 | HMDB team, MONA | View Spectrum | Experimental LC-MS/MS | LC-MS/MS Spectrum - 13-cis Retinol Quattro_QQQ 25V, Positive-QTOF (Annotated) | splash10-05gj-3900000000-a63c286f931608f650a3 | 2018-05-25 | HMDB team, MONA | View Spectrum | Experimental LC-MS/MS | LC-MS/MS Spectrum - 13-cis Retinol Quattro_QQQ 40V, Positive-QTOF (Annotated) | splash10-05mo-9700000000-e627db30469c74bb037f | 2018-05-25 | HMDB team, MONA | View Spectrum | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - 13-cis Retinol 10V, Positive-QTOF | splash10-00kr-1490000000-7205fba02aeb80622df8 | 2017-09-01 | Wishart Lab | View Spectrum | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - 13-cis Retinol 20V, Positive-QTOF | splash10-00m0-3920000000-951836eaf171751b137c | 2017-09-01 | Wishart Lab | View Spectrum | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - 13-cis Retinol 40V, Positive-QTOF | splash10-0lei-9810000000-b9b76a3e956e61a7d39e | 2017-09-01 | Wishart Lab | View Spectrum | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - 13-cis Retinol 10V, Negative-QTOF | splash10-000i-0090000000-575d71f5f53354f828c2 | 2017-09-01 | Wishart Lab | View Spectrum | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - 13-cis Retinol 20V, Negative-QTOF | splash10-0a4r-0090000000-c71c47589510cf7c1a0b | 2017-09-01 | Wishart Lab | View Spectrum | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - 13-cis Retinol 40V, Negative-QTOF | splash10-00ku-3690000000-26f7587a1f34c10cd8f7 | 2017-09-01 | Wishart Lab | View Spectrum | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - 13-cis Retinol 10V, Negative-QTOF | splash10-0a4i-0090000000-fe93459d3069e264b77f | 2021-09-23 | Wishart Lab | View Spectrum | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - 13-cis Retinol 20V, Negative-QTOF | splash10-05mx-0190000000-f81760535f6050971f92 | 2021-09-23 | Wishart Lab | View Spectrum | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - 13-cis Retinol 40V, Negative-QTOF | splash10-00li-0960000000-4dbc516b202b90a6c265 | 2021-09-23 | Wishart Lab | View Spectrum | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - 13-cis Retinol 10V, Positive-QTOF | splash10-015i-1890000000-fb68e645ac6c84dc722c | 2021-09-25 | Wishart Lab | View Spectrum | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - 13-cis Retinol 20V, Positive-QTOF | splash10-05a9-2910000000-aa07b89a9cfe132b8725 | 2021-09-25 | Wishart Lab | View Spectrum | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - 13-cis Retinol 40V, Positive-QTOF | splash10-06dl-5900000000-6de72efc591b252620c9 | 2021-09-25 | Wishart Lab | View Spectrum |
NMR SpectraSpectrum Type | Description | Deposition Date | Source | View |
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Experimental 2D NMR | [1H, 13C]-HSQC NMR Spectrum (2D, 600 MHz, CDCl3, experimental) | 2018-05-25 | Wishart Lab | View Spectrum |
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Synthesis Reference | Albert, Klaus; Schlotterbeck, Goetz; Braumann, Ulrich; Haendel, Heidrun; Spraul, Manfred; Krack, Gerhard. Structure determination of vitamin A acetate isomers through coupled HPLC and 1H NMR spectroscopy. Angewandte Chemie, International Edition in English (1995), 34(9), 1014-16. |
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General References | - Driessen CA, Winkens HJ, Hoffmann K, Kuhlmann LD, Janssen BP, Van Vugt AH, Van Hooser JP, Wieringa BE, Deutman AF, Palczewski K, Ruether K, Janssen JJ: Disruption of the 11-cis-retinol dehydrogenase gene leads to accumulation of cis-retinols and cis-retinyl esters. Mol Cell Biol. 2000 Jun;20(12):4275-87. [PubMed:10825191 ]
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