Hmdb loader

Showing metabocard for Decanoyl-CoA (n-C10:0CoA) (HMDB0006404)

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IdentificationTaxonomyOntologyPhysical propertiesSpectraBiological propertiesConcentrationsLinksReferencesenzymes (111)transporters (1) Show 112 proteinsXML
enzymes (111)transporters (1) Show 112 proteins
Record Information
Version5.0
StatusExpected but not Quantified
Creation Date2007-05-23 05:41:47 UTC
Update Date2022-03-07 02:49:31 UTC
HMDB IDHMDB0006404
Secondary Accession Numbers
  • HMDB06404
Metabolite Identification
Common NameDecanoyl-CoA (n-C10:0CoA)
DescriptionDecanoyl CoA is a human liver acyl-CoA ester. It is selected to determine apparent kinetic constants for human liver acyl-CoA due to its relevance to the human diseases with cellular accumulation of this esters, especially to metabolic defects in the acyl-CoA dehydrogenation steps of the branched-chain amino acids, lysine, 5-hydroxy lysine, tryptophan, and fatty acid oxidation pathways. It is concluded that the substrate concentration is decisive for the glycine conjugate formation and that the occurrence in urine of acylglycines reflects an intramitochondrial accumulation of the corresponding acyl-CoA ester. (PMID: 3707752 ).
Structure
Data?1582752383
MOL3D MOLSDF3D SDFPDB3D PDBSMILESInChI

MOL for HMDB0006404 (Decanoyl-CoA (n-C10:0CoA))


  Mrv0541 02231220392D          

 59 61  0  0  0  0            999 V2000
    0.0122    3.0323    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3261    1.6018    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.4265    3.0323    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0163    3.8596    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5828    0.8274    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.0067    2.0949    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4265    3.8596    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1519    2.6124    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7051    4.2835    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4183    0.8274    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.0937    0.1671    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6792    1.6139    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -2.1519    4.2753    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8611    3.0323    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8381    0.2364    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4494    1.8545    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8611    3.8596    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1519    5.0986    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7144    0.2445    0.0000 P   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5784    1.3246    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6532    1.0271    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5213    0.2242    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7225   -0.5869    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
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    3.0975   -2.0949    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.8107   -1.6832    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.5198   -2.0949    0.0000 S   0  0  0  0  0  0  0  0  0  0  0  0
    5.2372   -1.6873    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.9463   -2.0990    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.2290   -0.8600    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.6596   -1.6873    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.3688   -2.1030    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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    8.7911   -0.4443    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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    8.0575    0.7989    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.3362    0.3872    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  2  1  1  1  0  0  0
  1  3  1  0  0  0  0
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  7 13  1  0  0  0  0
  8 14  2  0  0  0  0
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  7  9  1  0  0  0  0
 10 12  1  0  0  0  0
 14 17  1  0  0  0  0
M  END
Download

3D MOL for HMDB0006404 (Decanoyl-CoA (n-C10:0CoA))

HMDB0006404
     RDKit          3D
Decanoyl-CoA (n-C10:0CoA)
113115  0  0  0  0  0  0  0  0999 V2000
   16.0703   -1.0726   -0.7752 C   0  0  0  0  0  0  0  0  0  0  0  0
   16.1990    0.2336   -0.1004 C   0  0  0  0  0  0  0  0  0  0  0  0
   15.1186    0.6679    0.8228 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.7835    0.9089    0.2554 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.0807   -0.2551   -0.3721 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.7215    0.1731   -0.9349 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.7851    0.7162    0.1168 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.5251    1.1364   -0.6085 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.5081    1.7175    0.2616 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.9213    0.8466    1.2846 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.5147    0.1405    2.0533 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.0940    0.7647    1.4564 S   0  0  0  0  0  0  0  0  0  0  0  0
    5.3647    1.4605   -0.0405 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.5098    0.5590   -1.2450 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.7162   -0.6285   -1.2034 N   0  0  0  0  0  0  0  0  0  0  0  0
    4.5894   -1.6470   -0.3061 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.3029   -1.5910    0.7829 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.7076   -2.8253   -0.4238 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2621   -2.4863   -0.6759 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6241   -1.5588    0.1124 N   0  0  0  0  0  0  0  0  0  0  0  0
    0.9988   -0.6462    0.8861 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4059    0.5901    0.9486 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2046   -0.8355    1.7907 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0186   -0.0278    2.9541 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3957   -0.1825    1.1595 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0794    1.2948    0.8960 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4460   -0.1065    2.3239 C   0  0  0  0  0  0  0  0  0  0  0  0
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   -9.1894   -0.4800    0.1589 C   0  0  1  0  0  0  0  0  0  0  0  0
   -9.6748    0.7779    0.5369 O   0  0  0  0  0  0  0  0  0  0  0  0
  -10.9143    0.8669   -0.1195 C   0  0  1  0  0  0  0  0  0  0  0  0
  -11.5375    2.1266   -0.0121 N   0  0  0  0  0  0  0  0  0  0  0  0
  -11.4623    3.1635   -0.8459 C   0  0  0  0  0  0  0  0  0  0  0  0
  -12.2171    4.1876   -0.3784 N   0  0  0  0  0  0  0  0  0  0  0  0
  -12.7843    3.8059    0.7640 C   0  0  0  0  0  0  0  0  0  0  0  0
  -13.6385    4.4226    1.6542 C   0  0  0  0  0  0  0  0  0  0  0  0
  -14.1234    5.7344    1.4846 N   0  0  0  0  0  0  0  0  0  0  0  0
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  -13.6200    2.4647    2.9625 C   0  0  0  0  0  0  0  0  0  0  0  0
  -12.7917    1.8656    2.1015 N   0  0  0  0  0  0  0  0  0  0  0  0
  -12.3564    2.5021    0.9988 C   0  0  0  0  0  0  0  0  0  0  0  0
  -10.4762    0.5179   -1.5282 C   0  0  2  0  0  0  0  0  0  0  0  0
  -11.5598    0.2354   -2.3636 O   0  0  0  0  0  0  0  0  0  0  0  0
   -9.6523   -0.7460   -1.2303 C   0  0  2  0  0  0  0  0  0  0  0  0
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  -11.5067   -3.6351   -2.8290 O   0  0  0  0  0  0  0  0  0  0  0  0
   -9.5437   -4.2776   -1.2924 O   0  0  0  0  0  0  0  0  0  0  0  0
   -9.1977   -2.4861   -3.3957 O   0  0  0  0  0  0  0  0  0  0  0  0
   15.3971   -1.7854   -0.2998 H   0  0  0  0  0  0  0  0  0  0  0  0
   15.8355   -0.9170   -1.8631 H   0  0  0  0  0  0  0  0  0  0  0  0
   17.0968   -1.5673   -0.8044 H   0  0  0  0  0  0  0  0  0  0  0  0
   16.3573    1.0394   -0.8959 H   0  0  0  0  0  0  0  0  0  0  0  0
   17.2062    0.2475    0.4230 H   0  0  0  0  0  0  0  0  0  0  0  0
   15.0446   -0.0761    1.6969 H   0  0  0  0  0  0  0  0  0  0  0  0
   15.4603    1.6076    1.3668 H   0  0  0  0  0  0  0  0  0  0  0  0
   13.1439    1.3389    1.1039 H   0  0  0  0  0  0  0  0  0  0  0  0
   13.8846    1.7628   -0.4848 H   0  0  0  0  0  0  0  0  0  0  0  0
   12.9137   -1.0461    0.3427 H   0  0  0  0  0  0  0  0  0  0  0  0
   13.6921   -0.6303   -1.1898 H   0  0  0  0  0  0  0  0  0  0  0  0
   11.2548   -0.6973   -1.4287 H   0  0  0  0  0  0  0  0  0  0  0  0
   11.9135    0.9819   -1.6872 H   0  0  0  0  0  0  0  0  0  0  0  0
   10.5078   -0.0620    0.8661 H   0  0  0  0  0  0  0  0  0  0  0  0
   11.1972    1.5915    0.6256 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.8009    1.8095   -1.4669 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.1874    0.1969   -1.1428 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.0459    2.5563    0.8681 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.7380    2.3031   -0.2958 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.2697    1.6727    0.1627 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.7818    2.4613   -0.2049 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.3047    1.1827   -2.1587 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.5734    0.3035   -1.3249 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.0562   -0.7649   -2.0967 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.0589   -3.5169   -1.2133 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.7870   -3.4005    0.5386 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.1607   -2.2594   -1.7804 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.6784   -3.4893   -0.6220 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.5686   -0.6469   -0.2503 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3939   -1.8641    2.0325 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.9906   -0.0205    3.1419 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0368    1.8799    0.8822 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4767    1.7066    1.7253 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5823    1.3597   -0.0854 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0002    0.3816    3.1971 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2599    0.5758    1.9444 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8047   -1.0885    2.5945 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3336   -0.9738   -0.8596 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8506   -0.2407   -0.3653 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7381   -1.3574   -2.9530 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.1138   -4.2386    1.0648 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.4503   -0.6071    1.4125 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.1328    0.1210   -0.2033 H   0  0  0  0  0  0  0  0  0  0  0  0
   -9.6761   -1.1863    0.8944 H   0  0  0  0  0  0  0  0  0  0  0  0
  -11.5076    0.0095    0.2689 H   0  0  0  0  0  0  0  0  0  0  0  0
  -10.8856    3.1849   -1.7486 H   0  0  0  0  0  0  0  0  0  0  0  0
  -13.8786    6.4684    2.1865 H   0  0  0  0  0  0  0  0  0  0  0  0
  -14.7356    6.0273    0.6821 H   0  0  0  0  0  0  0  0  0  0  0  0
  -13.9438    1.9070    3.8324 H   0  0  0  0  0  0  0  0  0  0  0  0
   -9.8115    1.2473   -1.9815 H   0  0  0  0  0  0  0  0  0  0  0  0
  -11.8529    1.1209   -2.7539 H   0  0  0  0  0  0  0  0  0  0  0  0
   -8.8808   -0.9234   -1.9800 H   0  0  0  0  0  0  0  0  0  0  0  0
  -10.3112   -4.7368   -0.8243 H   0  0  0  0  0  0  0  0  0  0  0  0
   -9.6771   -2.0377   -4.1387 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  4  5  1  0
  5  6  1  0
  6  7  1  0
  7  8  1  0
  8  9  1  0
  9 10  1  0
 10 11  2  0
 10 12  1  0
 12 13  1  0
 13 14  1  0
 14 15  1  0
 15 16  1  0
 16 17  2  0
 16 18  1  0
 18 19  1  0
 19 20  1  0
 20 21  1  0
 21 22  2  0
 21 23  1  0
 23 24  1  0
 23 25  1  0
 25 26  1  0
 25 27  1  0
 25 28  1  0
 28 29  1  0
 29 30  1  0
 30 31  2  0
 30 32  1  0
 30 33  1  0
 33 34  1  0
 34 35  2  0
 34 36  1  0
 34 37  1  0
 37 38  1  0
 38 39  1  0
 39 40  1  0
 40 41  1  0
 41 42  1  0
 42 43  1  0
 43 44  2  0
 44 45  1  0
 45 46  2  0
 46 47  1  0
 46 48  1  0
 48 49  2  0
 49 50  1  0
 50 51  2  0
 41 52  1  0
 52 53  1  0
 52 54  1  0
 54 55  1  0
 55 56  1  0
 56 57  2  0
 56 58  1  0
 56 59  1  0
 54 39  1  0
 51 42  1  0
 51 45  1  0
  1 60  1  0
  1 61  1  0
  1 62  1  0
  2 63  1  0
  2 64  1  0
  3 65  1  0
  3 66  1  0
  4 67  1  0
  4 68  1  0
  5 69  1  0
  5 70  1  0
  6 71  1  0
  6 72  1  0
  7 73  1  0
  7 74  1  0
  8 75  1  0
  8 76  1  0
  9 77  1  0
  9 78  1  0
 13 79  1  0
 13 80  1  0
 14 81  1  0
 14 82  1  0
 15 83  1  0
 18 84  1  0
 18 85  1  0
 19 86  1  0
 19 87  1  0
 20 88  1  0
 23 89  1  0
 24 90  1  0
 26 91  1  0
 26 92  1  0
 26 93  1  0
 27 94  1  0
 27 95  1  0
 27 96  1  0
 28 97  1  0
 28 98  1  0
 32 99  1  0
 36100  1  0
 38101  1  0
 38102  1  0
 39103  1  1
 41104  1  1
 43105  1  0
 47106  1  0
 47107  1  0
 49108  1  0
 52109  1  6
 53110  1  0
 54111  1  6
 58112  1  0
 59113  1  0
M  END
Download

3D SDF for HMDB0006404 (Decanoyl-CoA (n-C10:0CoA))


  Mrv0541 02231220392D          

 59 61  0  0  0  0            999 V2000
    0.0122    3.0323    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3261    1.6018    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.4265    3.0323    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0163    3.8596    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5828    0.8274    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.0067    2.0949    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4265    3.8596    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1519    2.6124    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7051    4.2835    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4183    0.8274    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.0937    0.1671    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6792    1.6139    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -2.1519    4.2753    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8611    3.0323    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8381    0.2364    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4494    1.8545    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8611    3.8596    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1519    5.0986    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7144    0.2445    0.0000 P   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5784    1.3246    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6532    1.0271    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5213    0.2242    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7225   -0.5869    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8907    1.3083    0.0000 P   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8907   -0.4320    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8826    2.1397    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.7181    1.3246    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8867   -2.1153    0.0000 P   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0267   -2.0949    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8989   -3.0852    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.7141   -2.0990    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3216   -1.6873    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6043   -2.0949    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8911   -1.6873    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6166   -2.8285    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6247   -1.2472    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1779   -2.0949    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8911   -0.8600    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4646   -1.6873    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1779   -2.9182    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.2445   -2.0949    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9577   -1.6873    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6750   -2.0949    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3842   -1.6873    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    1.6750   -2.9182    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.0975   -2.0949    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.8107   -1.6832    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.5198   -2.0949    0.0000 S   0  0  0  0  0  0  0  0  0  0  0  0
    5.2372   -1.6873    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.9463   -2.0990    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.2290   -0.8600    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.6596   -1.6873    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.3688   -2.1030    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.0861   -1.6913    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.0820   -0.8640    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.7911   -0.4443    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.7830    0.3872    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.0575    0.7989    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.3362    0.3872    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  2  1  1  1  0  0  0
  1  3  1  0  0  0  0
  1  4  1  0  0  0  0
  2  5  1  0  0  0  0
  2  6  1  0  0  0  0
  3  7  2  0  0  0  0
  3  8  1  0  0  0  0
  4  9  2  0  0  0  0
  5 10  1  0  0  0  0
  5 11  1  6  0  0  0
  6 12  1  0  0  0  0
  7 13  1  0  0  0  0
  8 14  2  0  0  0  0
 10 15  1  6  0  0  0
 12 16  1  1  0  0  0
 13 17  2  0  0  0  0
 13 18  1  0  0  0  0
 15 19  1  0  0  0  0
 16 20  1  0  0  0  0
 19 21  1  0  0  0  0
 19 22  1  0  0  0  0
 19 23  2  0  0  0  0
 20 24  1  0  0  0  0
 24 25  1  0  0  0  0
 24 26  1  0  0  0  0
 24 27  2  0  0  0  0
 25 28  1  0  0  0  0
 28 29  1  0  0  0  0
 28 30  1  0  0  0  0
 28 31  2  0  0  0  0
 29 32  1  0  0  0  0
 32 33  1  0  0  0  0
 33 34  1  0  0  0  0
 33 35  1  0  0  0  0
 33 36  1  0  0  0  0
 34 37  1  0  0  0  0
 34 38  1  0  0  0  0
 37 39  1  0  0  0  0
 37 40  2  0  0  0  0
 39 41  1  0  0  0  0
 41 42  1  0  0  0  0
 42 43  1  0  0  0  0
 43 44  1  0  0  0  0
 43 45  2  0  0  0  0
 44 46  1  0  0  0  0
 46 47  1  0  0  0  0
 47 48  1  0  0  0  0
 48 49  1  0  0  0  0
 49 50  1  0  0  0  0
 49 51  2  0  0  0  0
 50 52  1  0  0  0  0
 52 53  1  0  0  0  0
 53 54  1  0  0  0  0
 54 55  1  0  0  0  0
 55 56  1  0  0  0  0
 56 57  1  0  0  0  0
 57 58  1  0  0  0  0
 58 59  1  0  0  0  0
  7  9  1  0  0  0  0
 10 12  1  0  0  0  0
 14 17  1  0  0  0  0
M  END
> <DATABASE_ID>
HMDB0006404

> <DATABASE_NAME>
hmdb

> <SMILES>
CCCCCCCCCC(=O)SCCNC(=O)CCNC(=O)C(O)C(C)(C)COP(O)(=O)OP(O)(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1OP(O)(O)=O)N1C=NC2=C1N=CN=C2N

> <INCHI_IDENTIFIER>
InChI=1S/C31H54N7O17P3S/c1-4-5-6-7-8-9-10-11-22(40)59-15-14-33-21(39)12-13-34-29(43)26(42)31(2,3)17-52-58(49,50)55-57(47,48)51-16-20-25(54-56(44,45)46)24(41)30(53-20)38-19-37-23-27(32)35-18-36-28(23)38/h18-20,24-26,30,41-42H,4-17H2,1-3H3,(H,33,39)(H,34,43)(H,47,48)(H,49,50)(H2,32,35,36)(H2,44,45,46)/t20-,24-,25-,26?,30-/m1/s1

> <INCHI_KEY>
CNKJPHSEFDPYDB-BOJFXZHGSA-N

> <FORMULA>
C31H54N7O17P3S

> <MOLECULAR_WEIGHT>
921.783

> <EXACT_MASS>
921.250973563

> <JCHEM_ACCEPTOR_COUNT>
17

> <JCHEM_AVERAGE_POLARIZABILITY>
87.87369189555537

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
9

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
{[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-2-[({[({3-[(2-{[2-(decanoylsulfanyl)ethyl]carbamoyl}ethyl)carbamoyl]-3-hydroxy-2,2-dimethylpropoxy}(hydroxy)phosphoryl)oxy](hydroxy)phosphoryl}oxy)methyl]-4-hydroxyoxolan-3-yl]oxy}phosphonic acid

> <ALOGPS_LOGP>
0.87

> <JCHEM_LOGP>
-3.1626943679663517

> <ALOGPS_LOGS>
-2.50

> <JCHEM_MDDR_LIKE_RULE>
1

> <JCHEM_NUMBER_OF_RINGS>
3

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-4

> <JCHEM_PKA>
1.8334045176178444

> <JCHEM_PKA_STRONGEST_ACIDIC>
0.8252479627216065

> <JCHEM_PKA_STRONGEST_BASIC>
4.946047024039826

> <JCHEM_POLAR_SURFACE_AREA>
363.6299999999999

> <JCHEM_REFRACTIVITY>
209.04190000000003

> <JCHEM_ROTATABLE_BOND_COUNT>
28

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
2.94e+00 g/l

> <JCHEM_TRADITIONAL_IUPAC>
[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-2-{[({3-[(2-{[2-(decanoylsulfanyl)ethyl]carbamoyl}ethyl)carbamoyl]-3-hydroxy-2,2-dimethylpropoxy(hydroxy)phosphoryl}oxy(hydroxy)phosphoryl)oxy]methyl}-4-hydroxyoxolan-3-yl]oxyphosphonic acid

> <JCHEM_VEBER_RULE>
0

$$$$
Download

3D-SDF for HMDB0006404 (Decanoyl-CoA (n-C10:0CoA))

HMDB0006404
     RDKit          3D
Decanoyl-CoA (n-C10:0CoA)
113115  0  0  0  0  0  0  0  0999 V2000
   16.0703   -1.0726   -0.7752 C   0  0  0  0  0  0  0  0  0  0  0  0
   16.1990    0.2336   -0.1004 C   0  0  0  0  0  0  0  0  0  0  0  0
   15.1186    0.6679    0.8228 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.7835    0.9089    0.2554 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.0807   -0.2551   -0.3721 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.7215    0.1731   -0.9349 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.7851    0.7162    0.1168 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.5251    1.1364   -0.6085 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.5081    1.7175    0.2616 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.9213    0.8466    1.2846 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.5147    0.1405    2.0533 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.0940    0.7647    1.4564 S   0  0  0  0  0  0  0  0  0  0  0  0
    5.3647    1.4605   -0.0405 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.5098    0.5590   -1.2450 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.7162   -0.6285   -1.2034 N   0  0  0  0  0  0  0  0  0  0  0  0
    4.5894   -1.6470   -0.3061 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.3029   -1.5910    0.7829 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.7076   -2.8253   -0.4238 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2621   -2.4863   -0.6759 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6241   -1.5588    0.1124 N   0  0  0  0  0  0  0  0  0  0  0  0
    0.9988   -0.6462    0.8861 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4059    0.5901    0.9486 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2046   -0.8355    1.7907 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0186   -0.0278    2.9541 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3957   -0.1825    1.1595 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0794    1.2948    0.8960 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4460   -0.1065    2.3239 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0090   -0.8751    0.0356 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5194   -2.1316    0.2560 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2955   -2.6421   -1.1585 P   0  0  0  0  0  5  0  0  0  0  0  0
   -3.5493   -4.1469   -1.1288 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3922   -2.1671   -2.4855 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8086   -1.8372   -1.2247 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.7434   -2.2745    0.0833 P   0  0  0  0  0  5  0  0  0  0  0  0
   -5.1782   -1.5731    1.3059 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.5344   -3.9629    0.2995 O   0  0  0  0  0  0  0  0  0  0  0  0
   -7.3839   -1.9355   -0.0963 O   0  0  0  0  0  0  0  0  0  0  0  0
   -7.7204   -0.6521    0.3268 C   0  0  0  0  0  0  0  0  0  0  0  0
   -9.1894   -0.4800    0.1589 C   0  0  1  0  0  0  0  0  0  0  0  0
   -9.6748    0.7779    0.5369 O   0  0  0  0  0  0  0  0  0  0  0  0
  -10.9143    0.8669   -0.1195 C   0  0  1  0  0  0  0  0  0  0  0  0
  -11.5375    2.1266   -0.0121 N   0  0  0  0  0  0  0  0  0  0  0  0
  -11.4623    3.1635   -0.8459 C   0  0  0  0  0  0  0  0  0  0  0  0
  -12.2171    4.1876   -0.3784 N   0  0  0  0  0  0  0  0  0  0  0  0
  -12.7843    3.8059    0.7640 C   0  0  0  0  0  0  0  0  0  0  0  0
  -13.6385    4.4226    1.6542 C   0  0  0  0  0  0  0  0  0  0  0  0
  -14.1234    5.7344    1.4846 N   0  0  0  0  0  0  0  0  0  0  0  0
  -14.0282    3.7185    2.7337 N   0  0  0  0  0  0  0  0  0  0  0  0
  -13.6200    2.4647    2.9625 C   0  0  0  0  0  0  0  0  0  0  0  0
  -12.7917    1.8656    2.1015 N   0  0  0  0  0  0  0  0  0  0  0  0
  -12.3564    2.5021    0.9988 C   0  0  0  0  0  0  0  0  0  0  0  0
  -10.4762    0.5179   -1.5282 C   0  0  2  0  0  0  0  0  0  0  0  0
  -11.5598    0.2354   -2.3636 O   0  0  0  0  0  0  0  0  0  0  0  0
   -9.6523   -0.7460   -1.2303 C   0  0  2  0  0  0  0  0  0  0  0  0
  -10.5953   -1.7801   -1.1834 O   0  0  0  0  0  0  0  0  0  0  0  0
  -10.2657   -3.0444   -2.2135 P   0  0  0  0  0  5  0  0  0  0  0  0
  -11.5067   -3.6351   -2.8290 O   0  0  0  0  0  0  0  0  0  0  0  0
   -9.5437   -4.2776   -1.2924 O   0  0  0  0  0  0  0  0  0  0  0  0
   -9.1977   -2.4861   -3.3957 O   0  0  0  0  0  0  0  0  0  0  0  0
   15.3971   -1.7854   -0.2998 H   0  0  0  0  0  0  0  0  0  0  0  0
   15.8355   -0.9170   -1.8631 H   0  0  0  0  0  0  0  0  0  0  0  0
   17.0968   -1.5673   -0.8044 H   0  0  0  0  0  0  0  0  0  0  0  0
   16.3573    1.0394   -0.8959 H   0  0  0  0  0  0  0  0  0  0  0  0
   17.2062    0.2475    0.4230 H   0  0  0  0  0  0  0  0  0  0  0  0
   15.0446   -0.0761    1.6969 H   0  0  0  0  0  0  0  0  0  0  0  0
   15.4603    1.6076    1.3668 H   0  0  0  0  0  0  0  0  0  0  0  0
   13.1439    1.3389    1.1039 H   0  0  0  0  0  0  0  0  0  0  0  0
   13.8846    1.7628   -0.4848 H   0  0  0  0  0  0  0  0  0  0  0  0
   12.9137   -1.0461    0.3427 H   0  0  0  0  0  0  0  0  0  0  0  0
   13.6921   -0.6303   -1.1898 H   0  0  0  0  0  0  0  0  0  0  0  0
   11.2548   -0.6973   -1.4287 H   0  0  0  0  0  0  0  0  0  0  0  0
   11.9135    0.9819   -1.6872 H   0  0  0  0  0  0  0  0  0  0  0  0
   10.5078   -0.0620    0.8661 H   0  0  0  0  0  0  0  0  0  0  0  0
   11.1972    1.5915    0.6256 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.8009    1.8095   -1.4669 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.1874    0.1969   -1.1428 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.0459    2.5563    0.8681 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.7380    2.3031   -0.2958 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.2697    1.6727    0.1627 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.7818    2.4613   -0.2049 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.3047    1.1827   -2.1587 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.5734    0.3035   -1.3249 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.0562   -0.7649   -2.0967 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.0589   -3.5169   -1.2133 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.7870   -3.4005    0.5386 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.1607   -2.2594   -1.7804 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.6784   -3.4893   -0.6220 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.5686   -0.6469   -0.2503 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3939   -1.8641    2.0325 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.9906   -0.0205    3.1419 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0368    1.8799    0.8822 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4767    1.7066    1.7253 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5823    1.3597   -0.0854 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0002    0.3816    3.1971 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2599    0.5758    1.9444 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8047   -1.0885    2.5945 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3336   -0.9738   -0.8596 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8506   -0.2407   -0.3653 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7381   -1.3574   -2.9530 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.1138   -4.2386    1.0648 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.4503   -0.6071    1.4125 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.1328    0.1210   -0.2033 H   0  0  0  0  0  0  0  0  0  0  0  0
   -9.6761   -1.1863    0.8944 H   0  0  0  0  0  0  0  0  0  0  0  0
  -11.5076    0.0095    0.2689 H   0  0  0  0  0  0  0  0  0  0  0  0
  -10.8856    3.1849   -1.7486 H   0  0  0  0  0  0  0  0  0  0  0  0
  -13.8786    6.4684    2.1865 H   0  0  0  0  0  0  0  0  0  0  0  0
  -14.7356    6.0273    0.6821 H   0  0  0  0  0  0  0  0  0  0  0  0
  -13.9438    1.9070    3.8324 H   0  0  0  0  0  0  0  0  0  0  0  0
   -9.8115    1.2473   -1.9815 H   0  0  0  0  0  0  0  0  0  0  0  0
  -11.8529    1.1209   -2.7539 H   0  0  0  0  0  0  0  0  0  0  0  0
   -8.8808   -0.9234   -1.9800 H   0  0  0  0  0  0  0  0  0  0  0  0
  -10.3112   -4.7368   -0.8243 H   0  0  0  0  0  0  0  0  0  0  0  0
   -9.6771   -2.0377   -4.1387 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  4  5  1  0
  5  6  1  0
  6  7  1  0
  7  8  1  0
  8  9  1  0
  9 10  1  0
 10 11  2  0
 10 12  1  0
 12 13  1  0
 13 14  1  0
 14 15  1  0
 15 16  1  0
 16 17  2  0
 16 18  1  0
 18 19  1  0
 19 20  1  0
 20 21  1  0
 21 22  2  0
 21 23  1  0
 23 24  1  0
 23 25  1  0
 25 26  1  0
 25 27  1  0
 25 28  1  0
 28 29  1  0
 29 30  1  0
 30 31  2  0
 30 32  1  0
 30 33  1  0
 33 34  1  0
 34 35  2  0
 34 36  1  0
 34 37  1  0
 37 38  1  0
 38 39  1  0
 39 40  1  0
 40 41  1  0
 41 42  1  0
 42 43  1  0
 43 44  2  0
 44 45  1  0
 45 46  2  0
 46 47  1  0
 46 48  1  0
 48 49  2  0
 49 50  1  0
 50 51  2  0
 41 52  1  0
 52 53  1  0
 52 54  1  0
 54 55  1  0
 55 56  1  0
 56 57  2  0
 56 58  1  0
 56 59  1  0
 54 39  1  0
 51 42  1  0
 51 45  1  0
  1 60  1  0
  1 61  1  0
  1 62  1  0
  2 63  1  0
  2 64  1  0
  3 65  1  0
  3 66  1  0
  4 67  1  0
  4 68  1  0
  5 69  1  0
  5 70  1  0
  6 71  1  0
  6 72  1  0
  7 73  1  0
  7 74  1  0
  8 75  1  0
  8 76  1  0
  9 77  1  0
  9 78  1  0
 13 79  1  0
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 18 84  1  0
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 20 88  1  0
 23 89  1  0
 24 90  1  0
 26 91  1  0
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 28 98  1  0
 32 99  1  0
 36100  1  0
 38101  1  0
 38102  1  0
 39103  1  1
 41104  1  1
 43105  1  0
 47106  1  0
 47107  1  0
 49108  1  0
 52109  1  6
 53110  1  0
 54111  1  6
 58112  1  0
 59113  1  0
M  END
Download

PDB for HMDB0006404 (Decanoyl-CoA (n-C10:0CoA))

HEADER    PROTEIN                                 23-FEB-12   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   23-FEB-12         0                                  
HETATM    1  N   UNK     0       0.023   5.660   0.000  0.00  0.00           N+0
HETATM    2  C   UNK     0      -0.609   2.990   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0      -2.663   5.660   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       0.030   7.205   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0      -1.088   1.544   0.000  0.00  0.00           C+0
HETATM    6  O   UNK     0      -1.879   3.910   0.000  0.00  0.00           O+0
HETATM    7  C   UNK     0      -2.663   7.205   0.000  0.00  0.00           C+0
HETATM    8  N   UNK     0      -4.017   4.876   0.000  0.00  0.00           N+0
HETATM    9  N   UNK     0      -1.316   7.996   0.000  0.00  0.00           N+0
HETATM   10  C   UNK     0      -2.647   1.544   0.000  0.00  0.00           C+0
HETATM   11  O   UNK     0      -0.175   0.312   0.000  0.00  0.00           O+0
HETATM   12  C   UNK     0      -3.135   3.013   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0      -4.017   7.981   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0      -5.341   5.660   0.000  0.00  0.00           C+0
HETATM   15  O   UNK     0      -3.431   0.441   0.000  0.00  0.00           O+0
HETATM   16  C   UNK     0      -4.572   3.462   0.000  0.00  0.00           C+0
HETATM   17  N   UNK     0      -5.341   7.205   0.000  0.00  0.00           N+0
HETATM   18  N   UNK     0      -4.017   9.517   0.000  0.00  0.00           N+0
HETATM   19  P   UNK     0      -5.067   0.456   0.000  0.00  0.00           P+0
HETATM   20  O   UNK     0      -6.680   2.473   0.000  0.00  0.00           O+0
HETATM   21  O   UNK     0      -4.953   1.917   0.000  0.00  0.00           O+0
HETATM   22  O   UNK     0      -6.573   0.419   0.000  0.00  0.00           O+0
HETATM   23  O   UNK     0      -5.082  -1.096   0.000  0.00  0.00           O+0
HETATM   24  P   UNK     0      -9.129   2.442   0.000  0.00  0.00           P+0
HETATM   25  O   UNK     0      -9.129  -0.806   0.000  0.00  0.00           O+0
HETATM   26  O   UNK     0      -9.114   3.994   0.000  0.00  0.00           O+0
HETATM   27  O   UNK     0     -10.674   2.473   0.000  0.00  0.00           O+0
HETATM   28  P   UNK     0      -9.122  -3.949   0.000  0.00  0.00           P+0
HETATM   29  O   UNK     0      -7.517  -3.910   0.000  0.00  0.00           O+0
HETATM   30  O   UNK     0      -9.145  -5.759   0.000  0.00  0.00           O+0
HETATM   31  O   UNK     0     -10.666  -3.918   0.000  0.00  0.00           O+0
HETATM   32  C   UNK     0      -6.200  -3.150   0.000  0.00  0.00           C+0
HETATM   33  C   UNK     0      -4.861  -3.910   0.000  0.00  0.00           C+0
HETATM   34  C   UNK     0      -3.530  -3.150   0.000  0.00  0.00           C+0
HETATM   35  C   UNK     0      -4.884  -5.280   0.000  0.00  0.00           C+0
HETATM   36  C   UNK     0      -4.899  -2.328   0.000  0.00  0.00           C+0
HETATM   37  C   UNK     0      -2.199  -3.910   0.000  0.00  0.00           C+0
HETATM   38  O   UNK     0      -3.530  -1.605   0.000  0.00  0.00           O+0
HETATM   39  N   UNK     0      -0.867  -3.150   0.000  0.00  0.00           N+0
HETATM   40  O   UNK     0      -2.199  -5.447   0.000  0.00  0.00           O+0
HETATM   41  C   UNK     0       0.456  -3.910   0.000  0.00  0.00           C+0
HETATM   42  C   UNK     0       1.788  -3.150   0.000  0.00  0.00           C+0
HETATM   43  C   UNK     0       3.127  -3.910   0.000  0.00  0.00           C+0
HETATM   44  N   UNK     0       4.451  -3.150   0.000  0.00  0.00           N+0
HETATM   45  O   UNK     0       3.127  -5.447   0.000  0.00  0.00           O+0
HETATM   46  C   UNK     0       5.782  -3.910   0.000  0.00  0.00           C+0
HETATM   47  C   UNK     0       7.113  -3.142   0.000  0.00  0.00           C+0
HETATM   48  S   UNK     0       8.437  -3.910   0.000  0.00  0.00           S+0
HETATM   49  C   UNK     0       9.776  -3.150   0.000  0.00  0.00           C+0
HETATM   50  C   UNK     0      11.100  -3.918   0.000  0.00  0.00           C+0
HETATM   51  O   UNK     0       9.761  -1.605   0.000  0.00  0.00           O+0
HETATM   52  C   UNK     0      12.431  -3.150   0.000  0.00  0.00           C+0
HETATM   53  C   UNK     0      13.755  -3.926   0.000  0.00  0.00           C+0
HETATM   54  C   UNK     0      15.094  -3.157   0.000  0.00  0.00           C+0
HETATM   55  C   UNK     0      15.086  -1.613   0.000  0.00  0.00           C+0
HETATM   56  C   UNK     0      16.410  -0.829   0.000  0.00  0.00           C+0
HETATM   57  C   UNK     0      16.395   0.723   0.000  0.00  0.00           C+0
HETATM   58  C   UNK     0      15.041   1.491   0.000  0.00  0.00           C+0
HETATM   59  C   UNK     0      13.694   0.723   0.000  0.00  0.00           C+0
CONECT    1    2    3    4                                                  
CONECT    2    1    5    6                                                  
CONECT    3    1    7    8                                                  
CONECT    4    1    9                                                       
CONECT    5    2   10   11                                                  
CONECT    6    2   12                                                       
CONECT    7    3   13    9                                                  
CONECT    8    3   14                                                       
CONECT    9    4    7                                                       
CONECT   10    5   15   12                                                  
CONECT   11    5                                                            
CONECT   12    6   16   10                                                  
CONECT   13    7   17   18                                                  
CONECT   14    8   17                                                       
CONECT   15   10   19                                                       
CONECT   16   12   20                                                       
CONECT   17   13   14                                                       
CONECT   18   13                                                            
CONECT   19   15   21   22   23                                             
CONECT   20   16   24                                                       
CONECT   21   19                                                            
CONECT   22   19                                                            
CONECT   23   19                                                            
CONECT   24   20   25   26   27                                             
CONECT   25   24   28                                                       
CONECT   26   24                                                            
CONECT   27   24                                                            
CONECT   28   25   29   30   31                                             
CONECT   29   28   32                                                       
CONECT   30   28                                                            
CONECT   31   28                                                            
CONECT   32   29   33                                                       
CONECT   33   32   34   35   36                                             
CONECT   34   33   37   38                                                  
CONECT   35   33                                                            
CONECT   36   33                                                            
CONECT   37   34   39   40                                                  
CONECT   38   34                                                            
CONECT   39   37   41                                                       
CONECT   40   37                                                            
CONECT   41   39   42                                                       
CONECT   42   41   43                                                       
CONECT   43   42   44   45                                                  
CONECT   44   43   46                                                       
CONECT   45   43                                                            
CONECT   46   44   47                                                       
CONECT   47   46   48                                                       
CONECT   48   47   49                                                       
CONECT   49   48   50   51                                                  
CONECT   50   49   52                                                       
CONECT   51   49                                                            
CONECT   52   50   53                                                       
CONECT   53   52   54                                                       
CONECT   54   53   55                                                       
CONECT   55   54   56                                                       
CONECT   56   55   57                                                       
CONECT   57   56   58                                                       
CONECT   58   57   59                                                       
CONECT   59   58                                                            
MASTER        0    0    0    0    0    0    0    0   59    0  122    0
END
Download

3D PDB for HMDB0006404 (Decanoyl-CoA (n-C10:0CoA))

COMPND    HMDB0006404
HETATM    1  C1  UNL     1      16.070  -1.073  -0.775  1.00  0.00           C  
HETATM    2  C2  UNL     1      16.199   0.234  -0.100  1.00  0.00           C  
HETATM    3  C3  UNL     1      15.119   0.668   0.823  1.00  0.00           C  
HETATM    4  C4  UNL     1      13.784   0.909   0.255  1.00  0.00           C  
HETATM    5  C5  UNL     1      13.081  -0.255  -0.372  1.00  0.00           C  
HETATM    6  C6  UNL     1      11.722   0.173  -0.935  1.00  0.00           C  
HETATM    7  C7  UNL     1      10.785   0.716   0.117  1.00  0.00           C  
HETATM    8  C8  UNL     1       9.525   1.136  -0.609  1.00  0.00           C  
HETATM    9  C9  UNL     1       8.508   1.717   0.262  1.00  0.00           C  
HETATM   10  C10 UNL     1       7.921   0.847   1.285  1.00  0.00           C  
HETATM   11  O1  UNL     1       8.515   0.141   2.053  1.00  0.00           O  
HETATM   12  S1  UNL     1       6.094   0.765   1.456  1.00  0.00           S  
HETATM   13  C11 UNL     1       5.365   1.460  -0.040  1.00  0.00           C  
HETATM   14  C12 UNL     1       5.510   0.559  -1.245  1.00  0.00           C  
HETATM   15  N1  UNL     1       4.716  -0.628  -1.203  1.00  0.00           N  
HETATM   16  C13 UNL     1       4.589  -1.647  -0.306  1.00  0.00           C  
HETATM   17  O2  UNL     1       5.303  -1.591   0.783  1.00  0.00           O  
HETATM   18  C14 UNL     1       3.708  -2.825  -0.424  1.00  0.00           C  
HETATM   19  C15 UNL     1       2.262  -2.486  -0.676  1.00  0.00           C  
HETATM   20  N2  UNL     1       1.624  -1.559   0.112  1.00  0.00           N  
HETATM   21  C16 UNL     1       0.999  -0.646   0.886  1.00  0.00           C  
HETATM   22  O3  UNL     1       1.406   0.590   0.949  1.00  0.00           O  
HETATM   23  C17 UNL     1      -0.205  -0.836   1.791  1.00  0.00           C  
HETATM   24  O4  UNL     1       0.019  -0.028   2.954  1.00  0.00           O  
HETATM   25  C18 UNL     1      -1.396  -0.183   1.159  1.00  0.00           C  
HETATM   26  C19 UNL     1      -1.079   1.295   0.896  1.00  0.00           C  
HETATM   27  C20 UNL     1      -2.446  -0.107   2.324  1.00  0.00           C  
HETATM   28  C21 UNL     1      -2.009  -0.875   0.036  1.00  0.00           C  
HETATM   29  O5  UNL     1      -2.519  -2.132   0.256  1.00  0.00           O  
HETATM   30  P1  UNL     1      -3.295  -2.642  -1.159  1.00  0.00           P  
HETATM   31  O6  UNL     1      -3.549  -4.147  -1.129  1.00  0.00           O  
HETATM   32  O7  UNL     1      -2.392  -2.167  -2.486  1.00  0.00           O  
HETATM   33  O8  UNL     1      -4.809  -1.837  -1.225  1.00  0.00           O  
HETATM   34  P2  UNL     1      -5.743  -2.275   0.083  1.00  0.00           P  
HETATM   35  O9  UNL     1      -5.178  -1.573   1.306  1.00  0.00           O  
HETATM   36  O10 UNL     1      -5.534  -3.963   0.300  1.00  0.00           O  
HETATM   37  O11 UNL     1      -7.384  -1.935  -0.096  1.00  0.00           O  
HETATM   38  C22 UNL     1      -7.720  -0.652   0.327  1.00  0.00           C  
HETATM   39  C23 UNL     1      -9.189  -0.480   0.159  1.00  0.00           C  
HETATM   40  O12 UNL     1      -9.675   0.778   0.537  1.00  0.00           O  
HETATM   41  C24 UNL     1     -10.914   0.867  -0.119  1.00  0.00           C  
HETATM   42  N3  UNL     1     -11.537   2.127  -0.012  1.00  0.00           N  
HETATM   43  C25 UNL     1     -11.462   3.163  -0.846  1.00  0.00           C  
HETATM   44  N4  UNL     1     -12.217   4.188  -0.378  1.00  0.00           N  
HETATM   45  C26 UNL     1     -12.784   3.806   0.764  1.00  0.00           C  
HETATM   46  C27 UNL     1     -13.638   4.423   1.654  1.00  0.00           C  
HETATM   47  N5  UNL     1     -14.123   5.734   1.485  1.00  0.00           N  
HETATM   48  N6  UNL     1     -14.028   3.719   2.734  1.00  0.00           N  
HETATM   49  C28 UNL     1     -13.620   2.465   2.962  1.00  0.00           C  
HETATM   50  N7  UNL     1     -12.792   1.866   2.102  1.00  0.00           N  
HETATM   51  C29 UNL     1     -12.356   2.502   0.999  1.00  0.00           C  
HETATM   52  C30 UNL     1     -10.476   0.518  -1.528  1.00  0.00           C  
HETATM   53  O13 UNL     1     -11.560   0.235  -2.364  1.00  0.00           O  
HETATM   54  C31 UNL     1      -9.652  -0.746  -1.230  1.00  0.00           C  
HETATM   55  O14 UNL     1     -10.595  -1.780  -1.183  1.00  0.00           O  
HETATM   56  P3  UNL     1     -10.266  -3.044  -2.213  1.00  0.00           P  
HETATM   57  O15 UNL     1     -11.507  -3.635  -2.829  1.00  0.00           O  
HETATM   58  O16 UNL     1      -9.544  -4.278  -1.292  1.00  0.00           O  
HETATM   59  O17 UNL     1      -9.198  -2.486  -3.396  1.00  0.00           O  
HETATM   60  H1  UNL     1      15.397  -1.785  -0.300  1.00  0.00           H  
HETATM   61  H2  UNL     1      15.835  -0.917  -1.863  1.00  0.00           H  
HETATM   62  H3  UNL     1      17.097  -1.567  -0.804  1.00  0.00           H  
HETATM   63  H4  UNL     1      16.357   1.039  -0.896  1.00  0.00           H  
HETATM   64  H5  UNL     1      17.206   0.247   0.423  1.00  0.00           H  
HETATM   65  H6  UNL     1      15.045  -0.076   1.697  1.00  0.00           H  
HETATM   66  H7  UNL     1      15.460   1.608   1.367  1.00  0.00           H  
HETATM   67  H8  UNL     1      13.144   1.339   1.104  1.00  0.00           H  
HETATM   68  H9  UNL     1      13.885   1.763  -0.485  1.00  0.00           H  
HETATM   69  H10 UNL     1      12.914  -1.046   0.343  1.00  0.00           H  
HETATM   70  H11 UNL     1      13.692  -0.630  -1.190  1.00  0.00           H  
HETATM   71  H12 UNL     1      11.255  -0.697  -1.429  1.00  0.00           H  
HETATM   72  H13 UNL     1      11.913   0.982  -1.687  1.00  0.00           H  
HETATM   73  H14 UNL     1      10.508  -0.062   0.866  1.00  0.00           H  
HETATM   74  H15 UNL     1      11.197   1.592   0.626  1.00  0.00           H  
HETATM   75  H16 UNL     1       9.801   1.809  -1.467  1.00  0.00           H  
HETATM   76  H17 UNL     1       9.187   0.197  -1.143  1.00  0.00           H  
HETATM   77  H18 UNL     1       9.046   2.556   0.868  1.00  0.00           H  
HETATM   78  H19 UNL     1       7.738   2.303  -0.296  1.00  0.00           H  
HETATM   79  H20 UNL     1       4.270   1.673   0.163  1.00  0.00           H  
HETATM   80  H21 UNL     1       5.782   2.461  -0.205  1.00  0.00           H  
HETATM   81  H22 UNL     1       5.305   1.183  -2.159  1.00  0.00           H  
HETATM   82  H23 UNL     1       6.573   0.304  -1.325  1.00  0.00           H  
HETATM   83  H24 UNL     1       4.056  -0.765  -2.097  1.00  0.00           H  
HETATM   84  H25 UNL     1       4.059  -3.517  -1.213  1.00  0.00           H  
HETATM   85  H26 UNL     1       3.787  -3.400   0.539  1.00  0.00           H  
HETATM   86  H27 UNL     1       2.161  -2.259  -1.780  1.00  0.00           H  
HETATM   87  H28 UNL     1       1.678  -3.489  -0.622  1.00  0.00           H  
HETATM   88  H29 UNL     1       2.569  -0.647  -0.250  1.00  0.00           H  
HETATM   89  H30 UNL     1      -0.394  -1.864   2.033  1.00  0.00           H  
HETATM   90  H31 UNL     1       0.991  -0.020   3.142  1.00  0.00           H  
HETATM   91  H32 UNL     1      -2.037   1.880   0.882  1.00  0.00           H  
HETATM   92  H33 UNL     1      -0.477   1.707   1.725  1.00  0.00           H  
HETATM   93  H34 UNL     1      -0.582   1.360  -0.085  1.00  0.00           H  
HETATM   94  H35 UNL     1      -2.000   0.382   3.197  1.00  0.00           H  
HETATM   95  H36 UNL     1      -3.260   0.576   1.944  1.00  0.00           H  
HETATM   96  H37 UNL     1      -2.805  -1.089   2.595  1.00  0.00           H  
HETATM   97  H38 UNL     1      -1.334  -0.974  -0.860  1.00  0.00           H  
HETATM   98  H39 UNL     1      -2.851  -0.241  -0.365  1.00  0.00           H  
HETATM   99  H40 UNL     1      -2.738  -1.357  -2.953  1.00  0.00           H  
HETATM  100  H41 UNL     1      -6.114  -4.239   1.065  1.00  0.00           H  
HETATM  101  H42 UNL     1      -7.450  -0.607   1.412  1.00  0.00           H  
HETATM  102  H43 UNL     1      -7.133   0.121  -0.203  1.00  0.00           H  
HETATM  103  H44 UNL     1      -9.676  -1.186   0.894  1.00  0.00           H  
HETATM  104  H45 UNL     1     -11.508   0.009   0.269  1.00  0.00           H  
HETATM  105  H46 UNL     1     -10.886   3.185  -1.749  1.00  0.00           H  
HETATM  106  H47 UNL     1     -13.879   6.468   2.187  1.00  0.00           H  
HETATM  107  H48 UNL     1     -14.736   6.027   0.682  1.00  0.00           H  
HETATM  108  H49 UNL     1     -13.944   1.907   3.832  1.00  0.00           H  
HETATM  109  H50 UNL     1      -9.811   1.247  -1.981  1.00  0.00           H  
HETATM  110  H51 UNL     1     -11.853   1.121  -2.754  1.00  0.00           H  
HETATM  111  H52 UNL     1      -8.881  -0.923  -1.980  1.00  0.00           H  
HETATM  112  H53 UNL     1     -10.311  -4.737  -0.824  1.00  0.00           H  
HETATM  113  H54 UNL     1      -9.677  -2.038  -4.139  1.00  0.00           H  
CONECT    1    2   60   61   62
CONECT    2    3   63   64
CONECT    3    4   65   66
CONECT    4    5   67   68
CONECT    5    6   69   70
CONECT    6    7   71   72
CONECT    7    8   73   74
CONECT    8    9   75   76
CONECT    9   10   77   78
CONECT   10   11   11   12
CONECT   12   13
CONECT   13   14   79   80
CONECT   14   15   81   82
CONECT   15   16   83
CONECT   16   17   17   18
CONECT   18   19   84   85
CONECT   19   20   86   87
CONECT   20   21   88
CONECT   21   22   22   23
CONECT   23   24   25   89
CONECT   24   90
CONECT   25   26   27   28
CONECT   26   91   92   93
CONECT   27   94   95   96
CONECT   28   29   97   98
CONECT   29   30
CONECT   30   31   31   32   33
CONECT   32   99
CONECT   33   34
CONECT   34   35   35   36   37
CONECT   36  100
CONECT   37   38
CONECT   38   39  101  102
CONECT   39   40   54  103
CONECT   40   41
CONECT   41   42   52  104
CONECT   42   43   51
CONECT   43   44   44  105
CONECT   44   45
CONECT   45   46   46   51
CONECT   46   47   48
CONECT   47  106  107
CONECT   48   49   49
CONECT   49   50  108
CONECT   50   51   51
CONECT   52   53   54  109
CONECT   53  110
CONECT   54   55  111
CONECT   55   56
CONECT   56   57   57   58   59
CONECT   58  112
CONECT   59  113
END
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SMILES for HMDB0006404 (Decanoyl-CoA (n-C10:0CoA))

CCCCCCCCCC(=O)SCCNC(=O)CCNC(=O)C(O)C(C)(C)COP(O)(=O)OP(O)(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1OP(O)(O)=O)N1C=NC2=C1N=CN=C2N
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INCHI for HMDB0006404 (Decanoyl-CoA (n-C10:0CoA))

InChI=1S/C31H54N7O17P3S/c1-4-5-6-7-8-9-10-11-22(40)59-15-14-33-21(39)12-13-34-29(43)26(42)31(2,3)17-52-58(49,50)55-57(47,48)51-16-20-25(54-56(44,45)46)24(41)30(53-20)38-19-37-23-27(32)35-18-36-28(23)38/h18-20,24-26,30,41-42H,4-17H2,1-3H3,(H,33,39)(H,34,43)(H,47,48)(H,49,50)(H2,32,35,36)(H2,44,45,46)/t20-,24-,25-,26?,30-/m1/s1
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View in JSmolView NMR AssignmentsView Stereo Labels
Synonyms
ValueSource
Decanoyl coenzyme A monohydrateHMDB
Decanoyl-CoAHMDB
Decanoyl-coenzyme AHMDB
S-DecanoateHMDB
S-Decanoate coenzyme AHMDB
S-Decanoic acidHMDB
Chemical FormulaC31H54N7O17P3S
Average Molecular Weight921.783
Monoisotopic Molecular Weight921.250973563
IUPAC Name{[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-2-[({[({3-[(2-{[2-(decanoylsulfanyl)ethyl]carbamoyl}ethyl)carbamoyl]-3-hydroxy-2,2-dimethylpropoxy}(hydroxy)phosphoryl)oxy](hydroxy)phosphoryl}oxy)methyl]-4-hydroxyoxolan-3-yl]oxy}phosphonic acid
Traditional Name[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-2-{[({3-[(2-{[2-(decanoylsulfanyl)ethyl]carbamoyl}ethyl)carbamoyl]-3-hydroxy-2,2-dimethylpropoxy(hydroxy)phosphoryl}oxy(hydroxy)phosphoryl)oxy]methyl}-4-hydroxyoxolan-3-yl]oxyphosphonic acid
CAS Registry Number1264-57-9
SMILES
CCCCCCCCCC(=O)SCCNC(=O)CCNC(=O)C(O)C(C)(C)COP(O)(=O)OP(O)(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1OP(O)(O)=O)N1C=NC2=C1N=CN=C2N
InChI Identifier
InChI=1S/C31H54N7O17P3S/c1-4-5-6-7-8-9-10-11-22(40)59-15-14-33-21(39)12-13-34-29(43)26(42)31(2,3)17-52-58(49,50)55-57(47,48)51-16-20-25(54-56(44,45)46)24(41)30(53-20)38-19-37-23-27(32)35-18-36-28(23)38/h18-20,24-26,30,41-42H,4-17H2,1-3H3,(H,33,39)(H,34,43)(H,47,48)(H,49,50)(H2,32,35,36)(H2,44,45,46)/t20-,24-,25-,26?,30-/m1/s1
InChI KeyCNKJPHSEFDPYDB-BOJFXZHGSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as 2,3,4-saturated fatty acyl coas. These are acyl-CoAs carrying a 2,3,4-saturated fatty acyl chain.
KingdomOrganic compounds
Super ClassLipids and lipid-like molecules
ClassFatty Acyls
Sub ClassFatty acyl thioesters
Direct Parent2,3,4-saturated fatty acyl CoAs
Alternative Parents
Substituents
  • Coenzyme a or derivatives
  • Purine ribonucleoside 3',5'-bisphosphate
  • Purine ribonucleoside bisphosphate
  • Purine ribonucleoside diphosphate
  • Ribonucleoside 3'-phosphate
  • Pentose phosphate
  • Pentose-5-phosphate
  • Beta amino acid or derivatives
  • Glycosyl compound
  • N-glycosyl compound
  • 6-aminopurine
  • Monosaccharide phosphate
  • Organic pyrophosphate
  • Pentose monosaccharide
  • Imidazopyrimidine
  • Purine
  • Monoalkyl phosphate
  • Aminopyrimidine
  • Imidolactam
  • N-acyl-amine
  • N-substituted imidazole
  • Organic phosphoric acid derivative
  • Monosaccharide
  • Pyrimidine
  • Alkyl phosphate
  • Fatty amide
  • Phosphoric acid ester
  • Tetrahydrofuran
  • Imidazole
  • Azole
  • Heteroaromatic compound
  • Carbothioic s-ester
  • Secondary alcohol
  • Thiocarboxylic acid ester
  • Carboxamide group
  • Secondary carboxylic acid amide
  • Amino acid or derivatives
  • Sulfenyl compound
  • Thiocarboxylic acid or derivatives
  • Organoheterocyclic compound
  • Azacycle
  • Oxacycle
  • Carboxylic acid derivative
  • Organosulfur compound
  • Organic oxygen compound
  • Hydrocarbon derivative
  • Carbonyl group
  • Organic nitrogen compound
  • Primary amine
  • Organopnictogen compound
  • Organic oxide
  • Organooxygen compound
  • Organonitrogen compound
  • Alcohol
  • Amine
  • Aromatic heteropolycyclic compound
Molecular FrameworkAromatic heteropolycyclic compounds
External Descriptors
Ontology
Physiological effectNot Available
Disposition
Biological locationRoute of exposureSource
Process
Naturally occurring process
Role
Biological roleIndustrial application
Physical Properties
StateSolid
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic Properties

Experimental Collision Cross Sections

Adduct TypeData SourceCCS Value (Å2)Reference
[M-H]-Not Available276.003http://allccs.zhulab.cn/database/detail?ID=AllCCS00000277
[M+H]+Not Available278.168http://allccs.zhulab.cn/database/detail?ID=AllCCS00000277
Predicted Molecular Properties
PropertyValueSource
Water Solubility2.94 g/LALOGPS
logP0.87ALOGPS
logP-3.2ChemAxon
logS-2.5ALOGPS
pKa (Strongest Acidic)0.83ChemAxon
pKa (Strongest Basic)4.95ChemAxon
Physiological Charge-4ChemAxon
Hydrogen Acceptor Count17ChemAxon
Hydrogen Donor Count9ChemAxon
Polar Surface Area363.63 ŲChemAxon
Rotatable Bond Count28ChemAxon
Refractivity209.04 m³·mol⁻¹ChemAxon
Polarizability87.87 ųChemAxon
Number of Rings3ChemAxon
BioavailabilityNoChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleYesChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
DeepCCS[M+H]+222.38830932474
DeepCCS[M-H]-220.73530932474
DeepCCS[M-2H]-254.76930932474
DeepCCS[M+Na]+229.15930932474
AllCCS[M+H]+273.332859911
AllCCS[M+H-H2O]+273.832859911
AllCCS[M+NH4]+272.732859911
AllCCS[M+Na]+272.532859911
AllCCS[M-H]-275.032859911
AllCCS[M+Na-2H]-280.332859911
AllCCS[M+HCOO]-286.132859911

Predicted Kovats Retention Indices

Not Available
Spectra

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Decanoyl-CoA (n-C10:0CoA) 10V, Positive-QTOFsplash10-000i-1911101102-21a54e6ddc3bc3f0fa2f2015-09-15Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Decanoyl-CoA (n-C10:0CoA) 20V, Positive-QTOFsplash10-000i-0940200000-cde77193a5a7de49b0862015-09-15Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Decanoyl-CoA (n-C10:0CoA) 40V, Positive-QTOFsplash10-000i-1910102000-ef500961059789acea182015-09-15Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Decanoyl-CoA (n-C10:0CoA) 10V, Negative-QTOFsplash10-0zpi-2912030303-cea2a707bb4d954482d62015-09-15Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Decanoyl-CoA (n-C10:0CoA) 20V, Negative-QTOFsplash10-0fai-2901010000-90a07e7716a613da0fbb2015-09-15Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Decanoyl-CoA (n-C10:0CoA) 40V, Negative-QTOFsplash10-057i-6900000000-a26ec16b7584e4b6f0cd2015-09-15Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Decanoyl-CoA (n-C10:0CoA) 10V, Positive-QTOFsplash10-00di-0000000009-9c6e246136b34450c4602021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Decanoyl-CoA (n-C10:0CoA) 20V, Positive-QTOFsplash10-000i-0901101444-7d82560a0eb08046a3362021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Decanoyl-CoA (n-C10:0CoA) 40V, Positive-QTOFsplash10-014i-0102900000-d37c54e3164eb2bba07a2021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Decanoyl-CoA (n-C10:0CoA) 10V, Negative-QTOFsplash10-00di-0000000009-b80ec55ac3d3f5f28bff2021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Decanoyl-CoA (n-C10:0CoA) 20V, Negative-QTOFsplash10-00fr-4300202419-e5dbe4788b92dec8f8ff2021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Decanoyl-CoA (n-C10:0CoA) 40V, Negative-QTOFsplash10-0ftr-5504602935-4a47c48ba0e88b3c9b652021-09-22Wishart LabView Spectrum

NMR Spectra

Spectrum TypeDescriptionDeposition DateSourceView
Predicted 1D NMR13C NMR Spectrum (1D, 100 MHz, D2O, predicted)2021-09-25Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 100 MHz, D2O, predicted)2021-09-25Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 1000 MHz, D2O, predicted)2021-09-25Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 1000 MHz, D2O, predicted)2021-09-25Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 200 MHz, D2O, predicted)2021-09-25Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 200 MHz, D2O, predicted)2021-09-25Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 300 MHz, D2O, predicted)2021-09-25Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 300 MHz, D2O, predicted)2021-09-25Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 400 MHz, D2O, predicted)2021-09-25Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 400 MHz, D2O, predicted)2021-09-25Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 500 MHz, D2O, predicted)2021-09-25Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 500 MHz, D2O, predicted)2021-09-25Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 600 MHz, D2O, predicted)2021-09-25Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 600 MHz, D2O, predicted)2021-09-25Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 700 MHz, D2O, predicted)2021-09-25Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 700 MHz, D2O, predicted)2021-09-25Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 800 MHz, D2O, predicted)2021-09-25Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 800 MHz, D2O, predicted)2021-09-25Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 900 MHz, D2O, predicted)2021-09-25Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 900 MHz, D2O, predicted)2021-09-25Wishart LabView Spectrum
Biological Properties
Cellular Locations
  • Cytoplasm
  • Extracellular
  • Membrane
  • Peroxisome
Biospecimen LocationsNot Available
Tissue LocationsNot Available
Pathways
Normal Concentrations
Not Available
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDFDB023910
KNApSAcK IDNot Available
Chemspider ID389510
KEGG Compound IDC05274
BioCyc IDNot Available
BiGG ID45478
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound440615
PDB IDNot Available
ChEBI ID28493
Food Biomarker OntologyNot Available
VMH IDDCACOA
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Download (PDF)
General References
  1. Gregersen N, Kolvraa S, Mortensen PB: Acyl-CoA: glycine N-acyltransferase: in vitro studies on the glycine conjugation of straight- and branched-chained acyl-CoA esters in human liver. Biochem Med Metab Biol. 1986 Apr;35(2):210-8. [PubMed:3707752 ]

Only showing the first 10 proteins. There are 112 proteins in total.

Show all enzymes and transporters

Enzymes

Enzyme Details
1. 3-ketoacyl-CoA thiolase, mitochondrial
General function:
Involved in transferase activity, transferring acyl groups other than amino-acyl groups
Specific function:
Abolishes BNIP3-mediated apoptosis and mitochondrial damage.
Gene Name:
ACAA2
Uniprot ID:
P42765
Molecular weight:
41923.82
Reactions
Decanoyl-CoA (n-C10:0CoA) + Acetyl-CoA → Coenzyme A + 3-Oxododecanoyl-CoAdetails
Enzyme Details
2. 3-ketoacyl-CoA thiolase, peroxisomal
General function:
Involved in transferase activity, transferring acyl groups other than amino-acyl groups
Specific function:
Not Available
Gene Name:
ACAA1
Uniprot ID:
P09110
Molecular weight:
34664.46
Reactions
Decanoyl-CoA (n-C10:0CoA) + Acetyl-CoA → Coenzyme A + 3-Oxododecanoyl-CoAdetails
Enzyme Details
3. Trifunctional enzyme subunit beta, mitochondrial
General function:
Involved in transferase activity, transferring acyl groups other than amino-acyl groups
Specific function:
Not Available
Gene Name:
HADHB
Uniprot ID:
P55084
Molecular weight:
51293.955
Reactions
Decanoyl-CoA (n-C10:0CoA) + Acetyl-CoA → Coenzyme A + 3-Oxododecanoyl-CoAdetails
Enzyme Details
4. Methylmalonate-semialdehyde dehydrogenase [acylating], mitochondrial
General function:
Involved in oxidoreductase activity
Specific function:
Plays a role in valine and pyrimidine metabolism. Binds fatty acyl-CoA.
Gene Name:
ALDH6A1
Uniprot ID:
Q02252
Molecular weight:
57839.31
Enzyme Details
5. Long-chain specific acyl-CoA dehydrogenase, mitochondrial
General function:
Involved in acyl-CoA dehydrogenase activity
Specific function:
Not Available
Gene Name:
ACADL
Uniprot ID:
P28330
Molecular weight:
47655.275
Reactions
Decanoyl-CoA (n-C10:0CoA) + FAD → (2E)-Decenoyl-CoA + FADHdetails
Enzyme Details
6. Short-chain specific acyl-CoA dehydrogenase, mitochondrial
General function:
Involved in acyl-CoA dehydrogenase activity
Specific function:
Not Available
Gene Name:
ACADS
Uniprot ID:
P16219
Molecular weight:
44296.705
Enzyme Details
7. Medium-chain specific acyl-CoA dehydrogenase, mitochondrial
General function:
Involved in acyl-CoA dehydrogenase activity
Specific function:
This enzyme is specific for acyl chain lengths of 4 to 16.
Gene Name:
ACADM
Uniprot ID:
P11310
Molecular weight:
46587.98
Reactions
Decanoyl-CoA (n-C10:0CoA) + FAD → (2E)-Decenoyl-CoA + FADHdetails
Enzyme Details
8. Peroxisomal acyl-coenzyme A oxidase 1
General function:
Involved in acyl-CoA dehydrogenase activity
Specific function:
Catalyzes the desaturation of acyl-CoAs to 2-trans-enoyl-CoAs. Isoform 1 shows highest activity against medium-chain fatty acyl-CoAs and activity decreases with increasing chain length. Isoform 2 is active against a much broader range of substrates and shows activity towards very long-chain acyl-CoAs. Isoform 2 is twice as active as isoform 1 against 16-hydroxy-palmitoyl-CoA and is 25% more active against 1,16-hexadecanodioyl-CoA.
Gene Name:
ACOX1
Uniprot ID:
Q15067
Molecular weight:
70135.205
Reactions
Decanoyl-CoA (n-C10:0CoA) + FAD → (2E)-Decenoyl-CoA + FADHdetails
Enzyme Details
9. Peroxisomal acyl-coenzyme A oxidase 2
General function:
Involved in acyl-CoA dehydrogenase activity
Specific function:
Oxidizes the CoA esters of the bile acid intermediates di- and tri-hydroxycholestanoic acids.
Gene Name:
ACOX2
Uniprot ID:
Q99424
Molecular weight:
76826.14
Enzyme Details
10. Isovaleryl-CoA dehydrogenase, mitochondrial
General function:
Involved in acyl-CoA dehydrogenase activity
Specific function:
Not Available
Gene Name:
IVD
Uniprot ID:
P26440
Molecular weight:
43055.325

Transporters

Enzyme Details
1. Long-chain fatty acid transport protein 1
General function:
Lipid transport and metabolism
Specific function:
Involved in translocation of long-chain fatty acids (LFCA) across the plasma membrane. The LFCA import appears to be hormone-regulated in a tissue-specific manner. In adipocytes, but not myocytes, insulin induces a rapid translocation of FATP1 from intracellular compartments to the plasma membrane, paralleled by increased LFCA uptake. May act directly as a bona fide transporter, or alternatively, in a cytoplasmic or membrane- associated multimeric protein complex to trap and draw fatty acids towards accumulation. Plays a pivotal role in regulating available LFCA substrates from exogenous sources in tissues undergoing high levels of beta-oxidation or triglyceride synthesis. May be involved in regulation of cholesterol metabolism. Has acyl-CoA ligase activity for long-chain and very-long-chain fatty acids
Gene Name:
SLC27A1
Uniprot ID:
Q6PCB7
Molecular weight:
71107.5

Only showing the first 10 proteins. There are 112 proteins in total.

Show all enzymes and transporters