Record Information |
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Version | 5.0 |
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Status | Expected but not Quantified |
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Creation Date | 2008-09-11 00:41:42 UTC |
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Update Date | 2023-02-21 17:17:23 UTC |
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HMDB ID | HMDB0006938 |
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Secondary Accession Numbers | - HMDB0006781
- HMDB06781
- HMDB06938
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Metabolite Identification |
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Common Name | Tartronate semialdehyde |
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Description | Tartronate semialdehyde, also known as 2-hydroxy-3-oxopropanoate, belongs to the class of organic compounds known as monosaccharides. Monosaccharides are compounds containing one carbohydrate unit not glycosidically linked to another such unit, and no set of two or more glycosidically linked carbohydrate units. Monosaccharides have the general formula CnH2nOn. Tartronate semialdehyde exists in all living organisms, ranging from bacteria to humans. Tartronate semialdehyde has been detected, but not quantified in, several different foods, such as ginsengs (Panax), deerberries (Vaccinium stamineum), sourdough, prickly pears (Opuntia), and groundcherries (Physalis). This could make tartronate semialdehyde a potential biomarker for the consumption of these foods. Tartronate semialdehyde is a primary metabolite. Primary metabolites are metabolically or physiologically essential metabolites. They are directly involved in an organism’s growth, development or reproduction. Based on a literature review very few articles have been published on Tartronate semialdehyde. |
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Structure | InChI=1S/C3H4O4/c4-1-2(5)3(6)7/h1-2,5H,(H,6,7) |
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Synonyms | Value | Source |
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2-Hydroxy-3-oxopropanoate | ChEBI | 2-Hydroxy-3-oxopropanoic acid | Generator | Tartronic acid semialdehyde | Generator | Hydroxymalonaldehydic acid | MeSH, HMDB | Tartronic semialdehyde | MeSH, HMDB |
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Chemical Formula | C3H4O4 |
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Average Molecular Weight | 104.0615 |
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Monoisotopic Molecular Weight | 104.010958616 |
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IUPAC Name | 2-hydroxy-3-oxopropanoic acid |
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Traditional Name | tartronate semialdehyde |
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CAS Registry Number | Not Available |
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SMILES | OC(C=O)C(O)=O |
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InChI Identifier | InChI=1S/C3H4O4/c4-1-2(5)3(6)7/h1-2,5H,(H,6,7) |
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InChI Key | QWBAFPFNGRFSFB-UHFFFAOYSA-N |
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Chemical Taxonomy |
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Description | Belongs to the class of organic compounds known as monosaccharides. Monosaccharides are compounds containing one carbohydrate unit not glycosidically linked to another such unit, and no set of two or more glycosidically linked carbohydrate units. Monosaccharides have the general formula CnH2nOn. |
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Kingdom | Organic compounds |
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Super Class | Organic oxygen compounds |
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Class | Organooxygen compounds |
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Sub Class | Carbohydrates and carbohydrate conjugates |
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Direct Parent | Monosaccharides |
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Alternative Parents | |
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Substituents | - Alpha-hydroxy acid
- Hydroxy acid
- 1,3-dicarbonyl compound
- Monosaccharide
- Alpha-hydroxyaldehyde
- Secondary alcohol
- Carboxylic acid derivative
- Carboxylic acid
- Monocarboxylic acid or derivatives
- Aldehyde
- Alcohol
- Carbonyl group
- Organic oxide
- Hydrocarbon derivative
- Short-chain aldehyde
- Aliphatic acyclic compound
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Molecular Framework | Aliphatic acyclic compounds |
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External Descriptors | |
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Ontology |
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Physiological effect | Not Available |
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Disposition | |
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Process | |
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Role | Not Available |
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Physical Properties |
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State | Solid |
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Experimental Molecular Properties | Property | Value | Reference |
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Melting Point | Not Available | Not Available | Boiling Point | Not Available | Not Available | Water Solubility | Not Available | Not Available | LogP | Not Available | Not Available |
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Experimental Chromatographic Properties | Not Available |
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Predicted Molecular Properties | |
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Predicted Chromatographic Properties | Predicted Collision Cross SectionsPredicted Kovats Retention IndicesUnderivatizedDerivatizedDerivative Name / Structure | SMILES | Kovats RI Value | Column Type | Reference |
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Tartronate semialdehyde,1TMS,isomer #1 | C[Si](C)(C)OC(C=O)C(=O)O | 1162.9 | Semi standard non polar | 33892256 | Tartronate semialdehyde,1TMS,isomer #2 | C[Si](C)(C)OC(=O)C(O)C=O | 1077.6 | Semi standard non polar | 33892256 | Tartronate semialdehyde,1TMS,isomer #3 | C[Si](C)(C)OC=C(O)C(=O)O | 1212.0 | Semi standard non polar | 33892256 | Tartronate semialdehyde,2TMS,isomer #1 | C[Si](C)(C)OC(=O)C(C=O)O[Si](C)(C)C | 1227.5 | Semi standard non polar | 33892256 | Tartronate semialdehyde,2TMS,isomer #2 | C[Si](C)(C)OC=C(O[Si](C)(C)C)C(=O)O | 1315.1 | Semi standard non polar | 33892256 | Tartronate semialdehyde,2TMS,isomer #3 | C[Si](C)(C)OC=C(O)C(=O)O[Si](C)(C)C | 1287.3 | Semi standard non polar | 33892256 | Tartronate semialdehyde,3TMS,isomer #1 | C[Si](C)(C)OC=C(O[Si](C)(C)C)C(=O)O[Si](C)(C)C | 1396.4 | Semi standard non polar | 33892256 | Tartronate semialdehyde,3TMS,isomer #1 | C[Si](C)(C)OC=C(O[Si](C)(C)C)C(=O)O[Si](C)(C)C | 1305.1 | Standard non polar | 33892256 | Tartronate semialdehyde,3TMS,isomer #1 | C[Si](C)(C)OC=C(O[Si](C)(C)C)C(=O)O[Si](C)(C)C | 1352.9 | Standard polar | 33892256 | Tartronate semialdehyde,1TBDMS,isomer #1 | CC(C)(C)[Si](C)(C)OC(C=O)C(=O)O | 1405.6 | Semi standard non polar | 33892256 | Tartronate semialdehyde,1TBDMS,isomer #2 | CC(C)(C)[Si](C)(C)OC(=O)C(O)C=O | 1319.4 | Semi standard non polar | 33892256 | Tartronate semialdehyde,1TBDMS,isomer #3 | CC(C)(C)[Si](C)(C)OC=C(O)C(=O)O | 1479.3 | Semi standard non polar | 33892256 | Tartronate semialdehyde,2TBDMS,isomer #1 | CC(C)(C)[Si](C)(C)OC(=O)C(C=O)O[Si](C)(C)C(C)(C)C | 1663.8 | Semi standard non polar | 33892256 | Tartronate semialdehyde,2TBDMS,isomer #2 | CC(C)(C)[Si](C)(C)OC=C(O[Si](C)(C)C(C)(C)C)C(=O)O | 1788.5 | Semi standard non polar | 33892256 | Tartronate semialdehyde,2TBDMS,isomer #3 | CC(C)(C)[Si](C)(C)OC=C(O)C(=O)O[Si](C)(C)C(C)(C)C | 1734.8 | Semi standard non polar | 33892256 | Tartronate semialdehyde,3TBDMS,isomer #1 | CC(C)(C)[Si](C)(C)OC=C(O[Si](C)(C)C(C)(C)C)C(=O)O[Si](C)(C)C(C)(C)C | 1999.0 | Semi standard non polar | 33892256 | Tartronate semialdehyde,3TBDMS,isomer #1 | CC(C)(C)[Si](C)(C)OC=C(O[Si](C)(C)C(C)(C)C)C(=O)O[Si](C)(C)C(C)(C)C | 1886.9 | Standard non polar | 33892256 | Tartronate semialdehyde,3TBDMS,isomer #1 | CC(C)(C)[Si](C)(C)OC=C(O[Si](C)(C)C(C)(C)C)C(=O)O[Si](C)(C)C(C)(C)C | 1784.9 | Standard polar | 33892256 |
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| GC-MS SpectraSpectrum Type | Description | Splash Key | Deposition Date | Source | View |
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Predicted GC-MS | Predicted GC-MS Spectrum - Tartronate semialdehyde GC-MS (Non-derivatized) - 70eV, Positive | splash10-052f-9000000000-a60f01ed6b22e180e045 | 2017-09-01 | Wishart Lab | View Spectrum | Predicted GC-MS | Predicted GC-MS Spectrum - Tartronate semialdehyde GC-MS (2 TMS) - 70eV, Positive | splash10-00ac-9440000000-afd8c910b7b1f49d2e62 | 2017-10-06 | Wishart Lab | View Spectrum | Predicted GC-MS | Predicted GC-MS Spectrum - Tartronate semialdehyde GC-MS (Non-derivatized) - 70eV, Positive | Not Available | 2021-10-12 | Wishart Lab | View Spectrum | Predicted GC-MS | Predicted GC-MS Spectrum - Tartronate semialdehyde GC-MS (Non-derivatized) - 70eV, Positive | Not Available | 2021-10-12 | Wishart Lab | View Spectrum |
MS/MS SpectraSpectrum Type | Description | Splash Key | Deposition Date | Source | View |
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Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - Tartronate semialdehyde 10V, Positive-QTOF | splash10-0a4r-9500000000-f812e132ac3b2e736637 | 2015-09-15 | Wishart Lab | View Spectrum | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - Tartronate semialdehyde 20V, Positive-QTOF | splash10-0a4r-9100000000-ceca81538df1215a85f7 | 2015-09-15 | Wishart Lab | View Spectrum | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - Tartronate semialdehyde 40V, Positive-QTOF | splash10-0a4u-9000000000-9d63dd3b34de8e05e06e | 2015-09-15 | Wishart Lab | View Spectrum | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - Tartronate semialdehyde 10V, Negative-QTOF | splash10-0udi-6900000000-e9845cd50bf0a0e27a71 | 2015-09-15 | Wishart Lab | View Spectrum | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - Tartronate semialdehyde 20V, Negative-QTOF | splash10-0pc0-9200000000-a8bdb790ea1f2037fb61 | 2015-09-15 | Wishart Lab | View Spectrum | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - Tartronate semialdehyde 40V, Negative-QTOF | splash10-0a4i-9000000000-3b924f51c31faa2a9e9a | 2015-09-15 | Wishart Lab | View Spectrum | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - Tartronate semialdehyde 10V, Negative-QTOF | splash10-0zi3-9300000000-607c03f7e8cd6716e11d | 2021-09-25 | Wishart Lab | View Spectrum | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - Tartronate semialdehyde 20V, Negative-QTOF | splash10-0006-9000000000-f440bef0a5740a66164c | 2021-09-25 | Wishart Lab | View Spectrum | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - Tartronate semialdehyde 40V, Negative-QTOF | splash10-0006-9000000000-87a1803920534b6e560e | 2021-09-25 | Wishart Lab | View Spectrum | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - Tartronate semialdehyde 10V, Positive-QTOF | splash10-0a4u-9100000000-46786392dfaa1185c663 | 2021-09-25 | Wishart Lab | View Spectrum | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - Tartronate semialdehyde 20V, Positive-QTOF | splash10-066u-9000000000-5de8c87d45a4af20988e | 2021-09-25 | Wishart Lab | View Spectrum | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - Tartronate semialdehyde 40V, Positive-QTOF | splash10-0006-9000000000-034038c78b2eda187f41 | 2021-09-25 | Wishart Lab | View Spectrum |
NMR SpectraSpectrum Type | Description | Deposition Date | Source | View |
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Predicted 1D NMR | 1H NMR Spectrum (1D, 100 MHz, D2O, predicted) | 2021-09-29 | Wishart Lab | View Spectrum | Predicted 1D NMR | 13C NMR Spectrum (1D, 100 MHz, D2O, predicted) | 2021-09-29 | Wishart Lab | View Spectrum | Predicted 1D NMR | 1H NMR Spectrum (1D, 1000 MHz, D2O, predicted) | 2021-09-29 | Wishart Lab | View Spectrum | Predicted 1D NMR | 13C NMR Spectrum (1D, 1000 MHz, D2O, predicted) | 2021-09-29 | Wishart Lab | View Spectrum | Predicted 1D NMR | 1H NMR Spectrum (1D, 200 MHz, D2O, predicted) | 2021-09-29 | Wishart Lab | View Spectrum | Predicted 1D NMR | 13C NMR Spectrum (1D, 200 MHz, D2O, predicted) | 2021-09-29 | Wishart Lab | View Spectrum | Predicted 1D NMR | 1H NMR Spectrum (1D, 300 MHz, D2O, predicted) | 2021-09-29 | Wishart Lab | View Spectrum | Predicted 1D NMR | 13C NMR Spectrum (1D, 300 MHz, D2O, predicted) | 2021-09-29 | Wishart Lab | View Spectrum | Predicted 1D NMR | 1H NMR Spectrum (1D, 400 MHz, D2O, predicted) | 2021-09-29 | Wishart Lab | View Spectrum | Predicted 1D NMR | 13C NMR Spectrum (1D, 400 MHz, D2O, predicted) | 2021-09-29 | Wishart Lab | View Spectrum | Predicted 1D NMR | 1H NMR Spectrum (1D, 500 MHz, D2O, predicted) | 2021-09-29 | Wishart Lab | View Spectrum | Predicted 1D NMR | 13C NMR Spectrum (1D, 500 MHz, D2O, predicted) | 2021-09-29 | Wishart Lab | View Spectrum | Predicted 1D NMR | 1H NMR Spectrum (1D, 600 MHz, D2O, predicted) | 2021-09-29 | Wishart Lab | View Spectrum | Predicted 1D NMR | 13C NMR Spectrum (1D, 600 MHz, D2O, predicted) | 2021-09-29 | Wishart Lab | View Spectrum | Predicted 1D NMR | 1H NMR Spectrum (1D, 700 MHz, D2O, predicted) | 2021-09-29 | Wishart Lab | View Spectrum | Predicted 1D NMR | 13C NMR Spectrum (1D, 700 MHz, D2O, predicted) | 2021-09-29 | Wishart Lab | View Spectrum | Predicted 1D NMR | 1H NMR Spectrum (1D, 800 MHz, D2O, predicted) | 2021-09-29 | Wishart Lab | View Spectrum | Predicted 1D NMR | 13C NMR Spectrum (1D, 800 MHz, D2O, predicted) | 2021-09-29 | Wishart Lab | View Spectrum | Predicted 1D NMR | 1H NMR Spectrum (1D, 900 MHz, D2O, predicted) | 2021-09-29 | Wishart Lab | View Spectrum | Predicted 1D NMR | 13C NMR Spectrum (1D, 900 MHz, D2O, predicted) | 2021-09-29 | Wishart Lab | View Spectrum |
IR SpectraSpectrum Type | Description | Deposition Date | Source | View |
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Predicted IR Spectrum | IR Ion Spectrum (Predicted IRIS Spectrum, Adduct: [M-H]-) | 2023-02-03 | FELIX lab | View Spectrum | Predicted IR Spectrum | IR Ion Spectrum (Predicted IRIS Spectrum, Adduct: [M+H]+) | 2023-02-03 | FELIX lab | View Spectrum | Predicted IR Spectrum | IR Ion Spectrum (Predicted IRIS Spectrum, Adduct: [M+Na]+) | 2023-02-03 | FELIX lab | View Spectrum |
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