Record Information |
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Version | 5.0 |
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Status | Expected but not Quantified |
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Creation Date | 2009-04-06 16:19:40 UTC |
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Update Date | 2023-02-21 17:17:37 UTC |
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HMDB ID | HMDB0012127 |
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Secondary Accession Numbers | |
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Metabolite Identification |
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Common Name | (R)-2-Benzylsuccinate |
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Description | (R)-2-Benzylsuccinate is an aromatic compounds that is an intermediate in Benzoate degradation via CoA ligation. Biodegradation of aromatic compounds is a common process in anoxic environments. The many natural and synthetic aromatic compounds found in the environment are usually degraded by anaerobic microorganisms into only few central intermediates, prior to ring cleavage. Benzoyl-CoA is the most important of these intermediates since a large number of compounds, including chloro-, nitro-, and aminobenzoates, aromatic hydrocarbons, and phenolic compounds, are initially converted to benzoyl-CoA prior to ring reduction and cleavage. (R)-2-Benzylsuccinate can be generated from toluene via the enzyme benzylsuccinate synthase (EC 4.1.99.11). It is then converted to Benzylsuccinyl-CoA via the enzyme benzylsuccinate CoA-transferase BbsE subunit (EC 2.8.3.15). |
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Structure | OC(=O)C[C@H](CC1=CC=CC=C1)C(O)=O InChI=1S/C11H12O4/c12-10(13)7-9(11(14)15)6-8-4-2-1-3-5-8/h1-5,9H,6-7H2,(H,12,13)(H,14,15)/t9-/m0/s1 |
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Synonyms | Value | Source |
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(R)-2-Benzylsuccinic acid | Generator | (2R)-2-Benzylsuccinic acid | HMDB | L-Benzylsuccinate | HMDB | L-Benzylsuccinic acid | HMDB | (2S)-2-Benzylbutanedioate | Generator, HMDB |
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Chemical Formula | C11H12O4 |
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Average Molecular Weight | 208.2106 |
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Monoisotopic Molecular Weight | 208.073558872 |
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IUPAC Name | (2S)-2-benzylbutanedioic acid |
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Traditional Name | l-benzylsuccinic acid |
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CAS Registry Number | 884-33-3 |
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SMILES | OC(=O)C[C@H](CC1=CC=CC=C1)C(O)=O |
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InChI Identifier | InChI=1S/C11H12O4/c12-10(13)7-9(11(14)15)6-8-4-2-1-3-5-8/h1-5,9H,6-7H2,(H,12,13)(H,14,15)/t9-/m0/s1 |
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InChI Key | GTOFKXZQQDSVFH-VIFPVBQESA-N |
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Chemical Taxonomy |
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Description | Belongs to the class of organic compounds known as phenylpropanoic acids. Phenylpropanoic acids are compounds with a structure containing a benzene ring conjugated to a propanoic acid. |
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Kingdom | Organic compounds |
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Super Class | Phenylpropanoids and polyketides |
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Class | Phenylpropanoic acids |
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Sub Class | Not Available |
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Direct Parent | Phenylpropanoic acids |
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Alternative Parents | |
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Substituents | - 3-phenylpropanoic-acid
- Benzenoid
- Dicarboxylic acid or derivatives
- Monocyclic benzene moiety
- Carboxylic acid
- Carboxylic acid derivative
- Organic oxygen compound
- Organic oxide
- Hydrocarbon derivative
- Organooxygen compound
- Carbonyl group
- Aromatic homomonocyclic compound
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Molecular Framework | Aromatic homomonocyclic compounds |
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External Descriptors | Not Available |
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Ontology |
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Physiological effect | Not Available |
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Disposition | |
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Process | Not Available |
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Role | Not Available |
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Physical Properties |
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State | Solid |
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Experimental Molecular Properties | Property | Value | Reference |
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Melting Point | Not Available | Not Available | Boiling Point | Not Available | Not Available | Water Solubility | Not Available | Not Available | LogP | Not Available | Not Available |
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Experimental Chromatographic Properties | Not Available |
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Predicted Molecular Properties | |
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Predicted Chromatographic Properties | Predicted Collision Cross SectionsPredicted Kovats Retention IndicesUnderivatizedDerivatizedDerivative Name / Structure | SMILES | Kovats RI Value | Column Type | Reference |
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(R)-2-Benzylsuccinate,1TMS,isomer #1 | C[Si](C)(C)OC(=O)C[C@H](CC1=CC=CC=C1)C(=O)O | 1813.8 | Semi standard non polar | 33892256 | (R)-2-Benzylsuccinate,1TMS,isomer #2 | C[Si](C)(C)OC(=O)[C@H](CC(=O)O)CC1=CC=CC=C1 | 1802.4 | Semi standard non polar | 33892256 | (R)-2-Benzylsuccinate,2TMS,isomer #1 | C[Si](C)(C)OC(=O)C[C@H](CC1=CC=CC=C1)C(=O)O[Si](C)(C)C | 1848.4 | Semi standard non polar | 33892256 | (R)-2-Benzylsuccinate,1TBDMS,isomer #1 | CC(C)(C)[Si](C)(C)OC(=O)C[C@H](CC1=CC=CC=C1)C(=O)O | 2059.4 | Semi standard non polar | 33892256 | (R)-2-Benzylsuccinate,1TBDMS,isomer #2 | CC(C)(C)[Si](C)(C)OC(=O)[C@H](CC(=O)O)CC1=CC=CC=C1 | 2047.3 | Semi standard non polar | 33892256 | (R)-2-Benzylsuccinate,2TBDMS,isomer #1 | CC(C)(C)[Si](C)(C)OC(=O)C[C@H](CC1=CC=CC=C1)C(=O)O[Si](C)(C)C(C)(C)C | 2331.1 | Semi standard non polar | 33892256 |
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| GC-MS SpectraSpectrum Type | Description | Splash Key | Deposition Date | Source | View |
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Predicted GC-MS | Predicted GC-MS Spectrum - (R)-2-Benzylsuccinate GC-MS (Non-derivatized) - 70eV, Positive | splash10-0006-9800000000-5de889b4c36c3e909843 | 2017-09-01 | Wishart Lab | View Spectrum | Predicted GC-MS | Predicted GC-MS Spectrum - (R)-2-Benzylsuccinate GC-MS (2 TMS) - 70eV, Positive | splash10-007c-9070000000-019dc31183f7029405a8 | 2017-10-06 | Wishart Lab | View Spectrum | Predicted GC-MS | Predicted GC-MS Spectrum - (R)-2-Benzylsuccinate GC-MS (Non-derivatized) - 70eV, Positive | Not Available | 2021-10-12 | Wishart Lab | View Spectrum |
MS/MS SpectraSpectrum Type | Description | Splash Key | Deposition Date | Source | View |
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Experimental LC-MS/MS | LC-MS/MS Spectrum - (R)-2-Benzylsuccinate Quattro_QQQ 10V, Positive-QTOF (Annotated) | splash10-00dl-0900000000-86ec9667b560cf42409b | 2012-07-25 | HMDB team, MONA | View Spectrum | Experimental LC-MS/MS | LC-MS/MS Spectrum - (R)-2-Benzylsuccinate Quattro_QQQ 25V, Positive-QTOF (Annotated) | splash10-00r2-0900000000-3a815068b069da997597 | 2012-07-25 | HMDB team, MONA | View Spectrum | Experimental LC-MS/MS | LC-MS/MS Spectrum - (R)-2-Benzylsuccinate Quattro_QQQ 40V, Positive-QTOF (Annotated) | splash10-014i-0900000000-a16a7c749686cfa3f5dd | 2012-07-25 | HMDB team, MONA | View Spectrum | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - (R)-2-Benzylsuccinate 10V, Positive-QTOF | splash10-0006-0910000000-5a8ce5a01560eabb3ae5 | 2017-09-01 | Wishart Lab | View Spectrum | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - (R)-2-Benzylsuccinate 20V, Positive-QTOF | splash10-01oy-2900000000-b460fa93b6e2cb36e1f5 | 2017-09-01 | Wishart Lab | View Spectrum | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - (R)-2-Benzylsuccinate 40V, Positive-QTOF | splash10-014l-6900000000-55695b21ccd9fb29115f | 2017-09-01 | Wishart Lab | View Spectrum | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - (R)-2-Benzylsuccinate 10V, Negative-QTOF | splash10-0bt9-0960000000-abc21e2625fb843cc09b | 2017-09-01 | Wishart Lab | View Spectrum | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - (R)-2-Benzylsuccinate 20V, Negative-QTOF | splash10-08fr-0910000000-ce726630b288b3ea18d6 | 2017-09-01 | Wishart Lab | View Spectrum | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - (R)-2-Benzylsuccinate 40V, Negative-QTOF | splash10-0a4l-9300000000-76dcdd6634fa068b0445 | 2017-09-01 | Wishart Lab | View Spectrum | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - (R)-2-Benzylsuccinate 10V, Negative-QTOF | splash10-03di-0910000000-fb9f22c71853f063789d | 2021-09-24 | Wishart Lab | View Spectrum | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - (R)-2-Benzylsuccinate 20V, Negative-QTOF | splash10-014i-4900000000-f860244be1113634b924 | 2021-09-24 | Wishart Lab | View Spectrum | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - (R)-2-Benzylsuccinate 40V, Negative-QTOF | splash10-0006-9200000000-5ae6060973c140f65661 | 2021-09-24 | Wishart Lab | View Spectrum | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - (R)-2-Benzylsuccinate 10V, Positive-QTOF | splash10-0005-0900000000-3d9a6f96e17b84f86a32 | 2021-09-24 | Wishart Lab | View Spectrum | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - (R)-2-Benzylsuccinate 20V, Positive-QTOF | splash10-014l-5900000000-df2b9f60ea02e875fd89 | 2021-09-24 | Wishart Lab | View Spectrum | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - (R)-2-Benzylsuccinate 40V, Positive-QTOF | splash10-014l-7900000000-198aef11b236da952965 | 2021-09-24 | Wishart Lab | View Spectrum |
NMR SpectraSpectrum Type | Description | Deposition Date | Source | View |
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Experimental 1D NMR | 1H NMR Spectrum (1D, 500 MHz, H2O, experimental) | 2012-12-05 | Wishart Lab | View Spectrum | Experimental 2D NMR | [1H, 13C]-HSQC NMR Spectrum (2D, 500 MHz, H2O, experimental) | 2012-12-05 | Wishart Lab | View Spectrum |
IR SpectraSpectrum Type | Description | Deposition Date | Source | View |
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Predicted IR Spectrum | IR Ion Spectrum (Predicted IRIS Spectrum, Adduct: [M-H]-) | 2023-02-03 | FELIX lab | View Spectrum | Predicted IR Spectrum | IR Ion Spectrum (Predicted IRIS Spectrum, Adduct: [M+H]+) | 2023-02-03 | FELIX lab | View Spectrum | Predicted IR Spectrum | IR Ion Spectrum (Predicted IRIS Spectrum, Adduct: [M+Na]+) | 2023-02-03 | FELIX lab | View Spectrum |
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