Record Information |
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Version | 5.0 |
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Status | Expected but not Quantified |
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Creation Date | 2009-04-06 16:21:25 UTC |
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Update Date | 2022-03-07 02:51:22 UTC |
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HMDB ID | HMDB0012231 |
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Secondary Accession Numbers | |
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Metabolite Identification |
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Common Name | Geranylfarnesyl diphosphate |
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Description | Geranylfarnesyl diphosphate belongs to the class of organic compounds known as polyprenyl diphosphates. These are prenol lipids in which the diphosphate group is linked to one end of the polyprenol moiety. Based on a literature review a significant number of articles have been published on Geranylfarnesyl diphosphate. |
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Structure | CC(C)=CCC\C(C)=C\CC\C(C)=C\CC\C(C)=C\CC\C(C)=C\COP(O)(=O)OP(O)(O)=O InChI=1S/C25H44O7P2/c1-21(2)11-7-12-22(3)13-8-14-23(4)15-9-16-24(5)17-10-18-25(6)19-20-31-34(29,30)32-33(26,27)28/h11,13,15,17,19H,7-10,12,14,16,18,20H2,1-6H3,(H,29,30)(H2,26,27,28)/b22-13+,23-15+,24-17+,25-19+ |
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Synonyms | Value | Source |
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(2E,6E,10E,14E)-Geranylfarnesyl diphosphate | ChEBI | 2-trans,6-trans,10-trans,14-trans-Geranylfarnesyl diphosphate | ChEBI | all-trans-Farnesylgeranyl diphosphate | ChEBI | all-trans-Farnesylgeranyl pyrophosphate | ChEBI | all-trans-Geranylfarnesyl diphosphate | ChEBI | all-trans-Geranylfarnesyl pyrophosphate | ChEBI | (2E,6E,10E,14E)-Geranylfarnesyl diphosphoric acid | Generator | 2-trans,6-trans,10-trans,14-trans-Geranylfarnesyl diphosphoric acid | Generator | all-trans-Farnesylgeranyl diphosphoric acid | Generator | all-trans-Farnesylgeranyl pyrophosphoric acid | Generator | all-trans-Geranylfarnesyl diphosphoric acid | Generator | all-trans-Geranylfarnesyl pyrophosphoric acid | Generator | Geranylfarnesyl diphosphoric acid | Generator | all-trans-Pentaprenyl diphosphate | HMDB | Geranylfarnesyl-diphosphate | HMDB | Geranylfarnesyl-PP | HMDB | GFPP | HMDB | Geranylfarnesyl diphosphate | ChEBI | all-trans-Pentaprenyl diphosphoric acid | Generator |
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Chemical Formula | C25H44O7P2 |
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Average Molecular Weight | 518.5602 |
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Monoisotopic Molecular Weight | 518.256226786 |
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IUPAC Name | {[hydroxy({[(2E,6E,10E,14E)-3,7,11,15,19-pentamethylicosa-2,6,10,14,18-pentaen-1-yl]oxy})phosphoryl]oxy}phosphonic acid |
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Traditional Name | geranylfarnesyl diphosphate |
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CAS Registry Number | Not Available |
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SMILES | CC(C)=CCC\C(C)=C\CC\C(C)=C\CC\C(C)=C\CC\C(C)=C\COP(O)(=O)OP(O)(O)=O |
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InChI Identifier | InChI=1S/C25H44O7P2/c1-21(2)11-7-12-22(3)13-8-14-23(4)15-9-16-24(5)17-10-18-25(6)19-20-31-34(29,30)32-33(26,27)28/h11,13,15,17,19H,7-10,12,14,16,18,20H2,1-6H3,(H,29,30)(H2,26,27,28)/b22-13+,23-15+,24-17+,25-19+ |
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InChI Key | JMVSBFJBMXQNJW-GIXZANJISA-N |
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Chemical Taxonomy |
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Description | Belongs to the class of organic compounds known as polyprenyl diphosphates. These are prenol lipids in which the diphosphate group is linked to one end of the polyprenol moiety. |
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Kingdom | Organic compounds |
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Super Class | Lipids and lipid-like molecules |
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Class | Prenol lipids |
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Sub Class | Polyprenols |
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Direct Parent | Polyprenyl diphosphates |
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Alternative Parents | |
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Substituents | - Polyprenyl diphosphate
- Polyprenyl monophosphate
- Sesterterpenoid
- Organic pyrophosphate
- Isoprenoid phosphate
- Monoalkyl phosphate
- Alkyl phosphate
- Phosphoric acid ester
- Organic phosphoric acid derivative
- Organic oxygen compound
- Organic oxide
- Hydrocarbon derivative
- Organooxygen compound
- Aliphatic acyclic compound
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Molecular Framework | Aliphatic acyclic compounds |
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External Descriptors | |
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Ontology |
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Physiological effect | Not Available |
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Disposition | |
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Process | |
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Role | |
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Physical Properties |
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State | Solid |
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Experimental Molecular Properties | Property | Value | Reference |
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Melting Point | Not Available | Not Available | Boiling Point | Not Available | Not Available | Water Solubility | Not Available | Not Available | LogP | Not Available | Not Available |
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Experimental Chromatographic Properties | Not Available |
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Predicted Molecular Properties | | Show more...
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Predicted Chromatographic Properties | Predicted Collision Cross SectionsPredicted Kovats Retention IndicesDerivatizedDerivative Name / Structure | SMILES | Kovats RI Value | Column Type | Reference |
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Geranylfarnesyl diphosphate,1TMS,isomer #1 | CC(C)=CCC/C(C)=C/CC/C(C)=C/CC/C(C)=C/CC/C(C)=C/COP(=O)(O[Si](C)(C)C)OP(=O)(O)O | 3599.5 | Semi standard non polar | 33892256 | Geranylfarnesyl diphosphate,1TMS,isomer #1 | CC(C)=CCC/C(C)=C/CC/C(C)=C/CC/C(C)=C/CC/C(C)=C/COP(=O)(O[Si](C)(C)C)OP(=O)(O)O | 2917.7 | Standard non polar | 33892256 | Geranylfarnesyl diphosphate,1TMS,isomer #1 | CC(C)=CCC/C(C)=C/CC/C(C)=C/CC/C(C)=C/CC/C(C)=C/COP(=O)(O[Si](C)(C)C)OP(=O)(O)O | 4512.3 | Standard polar | 33892256 | Geranylfarnesyl diphosphate,1TMS,isomer #2 | CC(C)=CCC/C(C)=C/CC/C(C)=C/CC/C(C)=C/CC/C(C)=C/COP(=O)(O)OP(=O)(O)O[Si](C)(C)C | 3592.5 | Semi standard non polar | 33892256 | Geranylfarnesyl diphosphate,1TMS,isomer #2 | CC(C)=CCC/C(C)=C/CC/C(C)=C/CC/C(C)=C/CC/C(C)=C/COP(=O)(O)OP(=O)(O)O[Si](C)(C)C | 2924.8 | Standard non polar | 33892256 | Geranylfarnesyl diphosphate,1TMS,isomer #2 | CC(C)=CCC/C(C)=C/CC/C(C)=C/CC/C(C)=C/CC/C(C)=C/COP(=O)(O)OP(=O)(O)O[Si](C)(C)C | 4532.7 | Standard polar | 33892256 | Geranylfarnesyl diphosphate,2TMS,isomer #1 | CC(C)=CCC/C(C)=C/CC/C(C)=C/CC/C(C)=C/CC/C(C)=C/COP(=O)(O[Si](C)(C)C)OP(=O)(O)O[Si](C)(C)C | 3557.0 | Semi standard non polar | 33892256 | Geranylfarnesyl diphosphate,2TMS,isomer #1 | CC(C)=CCC/C(C)=C/CC/C(C)=C/CC/C(C)=C/CC/C(C)=C/COP(=O)(O[Si](C)(C)C)OP(=O)(O)O[Si](C)(C)C | 2993.7 | Standard non polar | 33892256 | Geranylfarnesyl diphosphate,2TMS,isomer #1 | CC(C)=CCC/C(C)=C/CC/C(C)=C/CC/C(C)=C/CC/C(C)=C/COP(=O)(O[Si](C)(C)C)OP(=O)(O)O[Si](C)(C)C | 4060.1 | Standard polar | 33892256 | Geranylfarnesyl diphosphate,2TMS,isomer #2 | CC(C)=CCC/C(C)=C/CC/C(C)=C/CC/C(C)=C/CC/C(C)=C/COP(=O)(O)OP(=O)(O[Si](C)(C)C)O[Si](C)(C)C | 3561.1 | Semi standard non polar | 33892256 | Geranylfarnesyl diphosphate,2TMS,isomer #2 | CC(C)=CCC/C(C)=C/CC/C(C)=C/CC/C(C)=C/CC/C(C)=C/COP(=O)(O)OP(=O)(O[Si](C)(C)C)O[Si](C)(C)C | 2973.4 | Standard non polar | 33892256 | Geranylfarnesyl diphosphate,2TMS,isomer #2 | CC(C)=CCC/C(C)=C/CC/C(C)=C/CC/C(C)=C/CC/C(C)=C/COP(=O)(O)OP(=O)(O[Si](C)(C)C)O[Si](C)(C)C | 4059.2 | Standard polar | 33892256 | Geranylfarnesyl diphosphate,3TMS,isomer #1 | CC(C)=CCC/C(C)=C/CC/C(C)=C/CC/C(C)=C/CC/C(C)=C/COP(=O)(O[Si](C)(C)C)OP(=O)(O[Si](C)(C)C)O[Si](C)(C)C | 3499.6 | Semi standard non polar | 33892256 | Geranylfarnesyl diphosphate,3TMS,isomer #1 | CC(C)=CCC/C(C)=C/CC/C(C)=C/CC/C(C)=C/CC/C(C)=C/COP(=O)(O[Si](C)(C)C)OP(=O)(O[Si](C)(C)C)O[Si](C)(C)C | 3041.9 | Standard non polar | 33892256 | Geranylfarnesyl diphosphate,3TMS,isomer #1 | CC(C)=CCC/C(C)=C/CC/C(C)=C/CC/C(C)=C/CC/C(C)=C/COP(=O)(O[Si](C)(C)C)OP(=O)(O[Si](C)(C)C)O[Si](C)(C)C | 3581.5 | Standard polar | 33892256 | Geranylfarnesyl diphosphate,1TBDMS,isomer #1 | CC(C)=CCC/C(C)=C/CC/C(C)=C/CC/C(C)=C/CC/C(C)=C/COP(=O)(O[Si](C)(C)C(C)(C)C)OP(=O)(O)O | 3800.4 | Semi standard non polar | 33892256 | Geranylfarnesyl diphosphate,1TBDMS,isomer #1 | CC(C)=CCC/C(C)=C/CC/C(C)=C/CC/C(C)=C/CC/C(C)=C/COP(=O)(O[Si](C)(C)C(C)(C)C)OP(=O)(O)O | 3062.5 | Standard non polar | 33892256 | Geranylfarnesyl diphosphate,1TBDMS,isomer #1 | CC(C)=CCC/C(C)=C/CC/C(C)=C/CC/C(C)=C/CC/C(C)=C/COP(=O)(O[Si](C)(C)C(C)(C)C)OP(=O)(O)O | 4589.0 | Standard polar | 33892256 | Geranylfarnesyl diphosphate,1TBDMS,isomer #2 | CC(C)=CCC/C(C)=C/CC/C(C)=C/CC/C(C)=C/CC/C(C)=C/COP(=O)(O)OP(=O)(O)O[Si](C)(C)C(C)(C)C | 3792.4 | Semi standard non polar | 33892256 | Geranylfarnesyl diphosphate,1TBDMS,isomer #2 | CC(C)=CCC/C(C)=C/CC/C(C)=C/CC/C(C)=C/CC/C(C)=C/COP(=O)(O)OP(=O)(O)O[Si](C)(C)C(C)(C)C | 3080.5 | Standard non polar | 33892256 | Geranylfarnesyl diphosphate,1TBDMS,isomer #2 | CC(C)=CCC/C(C)=C/CC/C(C)=C/CC/C(C)=C/CC/C(C)=C/COP(=O)(O)OP(=O)(O)O[Si](C)(C)C(C)(C)C | 4604.2 | Standard polar | 33892256 | Geranylfarnesyl diphosphate,2TBDMS,isomer #1 | CC(C)=CCC/C(C)=C/CC/C(C)=C/CC/C(C)=C/CC/C(C)=C/COP(=O)(O[Si](C)(C)C(C)(C)C)OP(=O)(O)O[Si](C)(C)C(C)(C)C | 3920.0 | Semi standard non polar | 33892256 | Geranylfarnesyl diphosphate,2TBDMS,isomer #1 | CC(C)=CCC/C(C)=C/CC/C(C)=C/CC/C(C)=C/CC/C(C)=C/COP(=O)(O[Si](C)(C)C(C)(C)C)OP(=O)(O)O[Si](C)(C)C(C)(C)C | 3280.9 | Standard non polar | 33892256 | Geranylfarnesyl diphosphate,2TBDMS,isomer #1 | CC(C)=CCC/C(C)=C/CC/C(C)=C/CC/C(C)=C/CC/C(C)=C/COP(=O)(O[Si](C)(C)C(C)(C)C)OP(=O)(O)O[Si](C)(C)C(C)(C)C | 4148.5 | Standard polar | 33892256 | Geranylfarnesyl diphosphate,2TBDMS,isomer #2 | CC(C)=CCC/C(C)=C/CC/C(C)=C/CC/C(C)=C/CC/C(C)=C/COP(=O)(O)OP(=O)(O[Si](C)(C)C(C)(C)C)O[Si](C)(C)C(C)(C)C | 3924.2 | Semi standard non polar | 33892256 | Geranylfarnesyl diphosphate,2TBDMS,isomer #2 | CC(C)=CCC/C(C)=C/CC/C(C)=C/CC/C(C)=C/CC/C(C)=C/COP(=O)(O)OP(=O)(O[Si](C)(C)C(C)(C)C)O[Si](C)(C)C(C)(C)C | 3248.1 | Standard non polar | 33892256 | Geranylfarnesyl diphosphate,2TBDMS,isomer #2 | CC(C)=CCC/C(C)=C/CC/C(C)=C/CC/C(C)=C/CC/C(C)=C/COP(=O)(O)OP(=O)(O[Si](C)(C)C(C)(C)C)O[Si](C)(C)C(C)(C)C | 4176.8 | Standard polar | 33892256 | Geranylfarnesyl diphosphate,3TBDMS,isomer #1 | CC(C)=CCC/C(C)=C/CC/C(C)=C/CC/C(C)=C/CC/C(C)=C/COP(=O)(O[Si](C)(C)C(C)(C)C)OP(=O)(O[Si](C)(C)C(C)(C)C)O[Si](C)(C)C(C)(C)C | 4025.3 | Semi standard non polar | 33892256 | Geranylfarnesyl diphosphate,3TBDMS,isomer #1 | CC(C)=CCC/C(C)=C/CC/C(C)=C/CC/C(C)=C/CC/C(C)=C/COP(=O)(O[Si](C)(C)C(C)(C)C)OP(=O)(O[Si](C)(C)C(C)(C)C)O[Si](C)(C)C(C)(C)C | 3447.9 | Standard non polar | 33892256 | Geranylfarnesyl diphosphate,3TBDMS,isomer #1 | CC(C)=CCC/C(C)=C/CC/C(C)=C/CC/C(C)=C/CC/C(C)=C/COP(=O)(O[Si](C)(C)C(C)(C)C)OP(=O)(O[Si](C)(C)C(C)(C)C)O[Si](C)(C)C(C)(C)C | 3751.4 | Standard polar | 33892256 |
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