Hmdb loader
Record Information
Version5.0
StatusExpected but not Quantified
Creation Date2012-09-11 17:33:39 UTC
Update Date2022-03-07 02:52:21 UTC
HMDB IDHMDB0029936
Secondary Accession Numbers
  • HMDB29936
Metabolite Identification
Common Name(2S,4R,5S)-Muscarine
Description(2S,4R,5S)-Muscarine, also known as muscarin, belongs to the class of organic compounds known as pentoses. These are monosaccharides in which the carbohydrate moiety contains five carbon atoms. Based on a literature review very few articles have been published on (2S,4R,5S)-Muscarine.
Structure
Data?1563861913
Synonyms
ValueSource
(+)-(2S,4R,5S)-MuscarineHMDB
(+)-MuscarineHMDB
L-(+)-MuscarineHMDB
MuscarinHMDB
MuscarineHMDB
Muscarine (alkaloid)HMDB
Muscarine (the alkaloid)HMDB
Muscarine chlorideHMDB
Muscarine IIHMDB
MuskarinHMDB
Trimethyl(tetrahydro-4-hydroxy-5-methylfurfuryl)-ammoniumHMDB
Chemical FormulaC9H20NO2
Average Molecular Weight174.2606
Monoisotopic Molecular Weight174.149403889
IUPAC Name[(4-hydroxy-5-methyloxolan-2-yl)methyl]trimethylazanium
Traditional Name[(4-hydroxy-5-methyloxolan-2-yl)methyl]trimethylazanium
CAS Registry Number300-54-9
SMILES
CC1OC(C[N+](C)(C)C)CC1O
InChI Identifier
InChI=1S/C9H20NO2/c1-7-9(11)5-8(12-7)6-10(2,3)4/h7-9,11H,5-6H2,1-4H3/q+1
InChI KeyUQOFGTXDASPNLL-UHFFFAOYSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as pentoses. These are monosaccharides in which the carbohydrate moiety contains five carbon atoms.
KingdomOrganic compounds
Super ClassOrganic oxygen compounds
ClassOrganooxygen compounds
Sub ClassCarbohydrates and carbohydrate conjugates
Direct ParentPentoses
Alternative Parents
Substituents
  • Pentose monosaccharide
  • Quaternary ammonium salt
  • Tetraalkylammonium salt
  • Tetrahydrofuran
  • Secondary alcohol
  • Dialkyl ether
  • Ether
  • Oxacycle
  • Organoheterocyclic compound
  • Hydrocarbon derivative
  • Organopnictogen compound
  • Organic nitrogen compound
  • Organonitrogen compound
  • Amine
  • Organic salt
  • Alcohol
  • Organic cation
  • Aliphatic heteromonocyclic compound
Molecular FrameworkAliphatic heteromonocyclic compounds
External DescriptorsNot Available
Ontology
Physiological effectNot Available
Disposition
ProcessNot Available
Role
Physical Properties
StateNot Available
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
Water Solubility0.64 g/LALOGPS
logP-3ALOGPS
logP-4.3ChemAxon
logS-2.5ALOGPS
pKa (Strongest Acidic)14.11ChemAxon
pKa (Strongest Basic)-3.2ChemAxon
Physiological Charge1ChemAxon
Hydrogen Acceptor Count2ChemAxon
Hydrogen Donor Count1ChemAxon
Polar Surface Area29.46 ŲChemAxon
Rotatable Bond Count2ChemAxon
Refractivity59.89 m³·mol⁻¹ChemAxon
Polarizability20.37 ųChemAxon
Number of Rings1ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterNoChemAxon
Veber's RuleYesChemAxon
MDDR-like RuleNoChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
DeepCCS[M+H]+144.15230932474
DeepCCS[M-H]-141.44830932474
DeepCCS[M-2H]-177.330932474
DeepCCS[M+Na]+152.83830932474
AllCCS[M+H]+138.232859911
AllCCS[M+H-H2O]+134.332859911
AllCCS[M+NH4]+141.932859911
AllCCS[M+Na]+142.932859911
AllCCS[M-H]-150.632859911
AllCCS[M+Na-2H]-151.932859911
AllCCS[M+HCOO]-153.532859911

Predicted Kovats Retention Indices

Underivatized

MetaboliteSMILESKovats RI ValueColumn TypeReference
(2S,4R,5S)-MuscarineCC1OC(C[N+](C)(C)C)CC1O1866.2Standard polar33892256
(2S,4R,5S)-MuscarineCC1OC(C[N+](C)(C)C)CC1O1010.7Standard non polar33892256
(2S,4R,5S)-MuscarineCC1OC(C[N+](C)(C)C)CC1O1235.0Semi standard non polar33892256

Derivatized

Derivative Name / StructureSMILESKovats RI ValueColumn TypeReference
(2S,4R,5S)-Muscarine,1TMS,isomer #1CC1OC(C[N+](C)(C)C)CC1O[Si](C)(C)C1317.7Semi standard non polar33892256
(2S,4R,5S)-Muscarine,1TBDMS,isomer #1CC1OC(C[N+](C)(C)C)CC1O[Si](C)(C)C(C)(C)C1541.9Semi standard non polar33892256
Spectra

GC-MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted GC-MSPredicted GC-MS Spectrum - (2S,4R,5S)-Muscarine GC-MS (Non-derivatized) - 70eV, Positivesplash10-056r-9300000000-da938db8819a4007b1772017-09-01Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - (2S,4R,5S)-Muscarine GC-MS (1 TMS) - 70eV, Positivesplash10-00bi-9410000000-a38e12a370a1cb674c872017-10-06Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - (2S,4R,5S)-Muscarine GC-MS (Non-derivatized) - 70eV, PositiveNot Available2021-10-12Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - (2S,4R,5S)-Muscarine GC-MS (Non-derivatized) - 70eV, PositiveNot Available2021-10-12Wishart LabView Spectrum

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (2S,4R,5S)-Muscarine 10V, Positive-QTOFsplash10-05fr-0900000000-a0080208160655ea0b732017-09-01Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (2S,4R,5S)-Muscarine 20V, Positive-QTOFsplash10-0ab9-2900000000-9edf94eafe412073184c2017-09-01Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (2S,4R,5S)-Muscarine 40V, Positive-QTOFsplash10-05fr-9100000000-c8c1131f5df11bfdcd192017-09-01Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (2S,4R,5S)-Muscarine 10V, Positive-QTOFsplash10-00di-5900000000-dc6f1c3cc2a46221b66f2021-09-23Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (2S,4R,5S)-Muscarine 20V, Positive-QTOFsplash10-01ot-9200000000-ef0c2c0097d10cfeab2b2021-09-23Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (2S,4R,5S)-Muscarine 40V, Positive-QTOFsplash10-0a4i-9000000000-91e38711547bc72905fc2021-09-23Wishart LabView Spectrum

NMR Spectra

Spectrum TypeDescriptionDeposition DateSourceView
Predicted 1D NMR1H NMR Spectrum (1D, 100 MHz, D2O, predicted)2021-09-30Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 100 MHz, D2O, predicted)2021-09-30Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 1000 MHz, D2O, predicted)2021-09-30Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 1000 MHz, D2O, predicted)2021-09-30Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 200 MHz, D2O, predicted)2021-09-30Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 200 MHz, D2O, predicted)2021-09-30Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 300 MHz, D2O, predicted)2021-09-30Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 300 MHz, D2O, predicted)2021-09-30Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 400 MHz, D2O, predicted)2021-09-30Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 400 MHz, D2O, predicted)2021-09-30Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 500 MHz, D2O, predicted)2021-09-30Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 500 MHz, D2O, predicted)2021-09-30Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 600 MHz, D2O, predicted)2021-09-30Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 600 MHz, D2O, predicted)2021-09-30Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 700 MHz, D2O, predicted)2021-09-30Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 700 MHz, D2O, predicted)2021-09-30Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 800 MHz, D2O, predicted)2021-09-30Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 800 MHz, D2O, predicted)2021-09-30Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 900 MHz, D2O, predicted)2021-09-30Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 900 MHz, D2O, predicted)2021-09-30Wishart LabView Spectrum
Biological Properties
Cellular Locations
  • Cytoplasm
  • Extracellular
Biospecimen LocationsNot Available
Tissue LocationsNot Available
Pathways
Normal Concentrations
Not Available
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDFDB001206
KNApSAcK IDC00001422
Chemspider ID4255959
KEGG Compound IDC07473
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound5079496
PDB IDNot Available
ChEBI ID522933
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General References
  1. (). Yannai, Shmuel. (2004) Dictionary of food compounds with CD-ROM: Additives, flavors, and ingredients. Boca Raton: Chapman & Hall/CRC.. .