Hmdb loader
Record Information
Version5.0
StatusExpected but not Quantified
Creation Date2012-09-11 17:35:50 UTC
Update Date2022-03-07 02:52:29 UTC
HMDB IDHMDB0030273
Secondary Accession Numbers
  • HMDB30273
Metabolite Identification
Common NameDehydrocarpaine II
DescriptionDehydrocarpaine II belongs to the class of organic compounds known as macrolides and analogues. These are organic compounds containing a lactone ring of at least twelve members. Dehydrocarpaine II has been detected, but not quantified in, fruits and papayas (Carica papaya). This could make dehydrocarpaine II a potential biomarker for the consumption of these foods. Based on a literature review very few articles have been published on Dehydrocarpaine II.
Structure
Data?1563861962
Synonyms
ValueSource
12,13,25,26-Tetradehydrocarpaine, 9ciHMDB
Chemical FormulaC28H46N2O4
Average Molecular Weight474.6758
Monoisotopic Molecular Weight474.34575797
IUPAC Name13,26-dimethyl-2,15-dioxa-12,25-diazatricyclo[22.2.2.2¹¹,¹⁴]triaconta-12,25-diene-3,16-dione
Traditional Name13,26-dimethyl-2,15-dioxa-12,25-diazatricyclo[22.2.2.2¹¹,¹⁴]triaconta-12,25-diene-3,16-dione
CAS Registry Number72362-03-9
SMILES
CC1=NC2CCC1OC(=O)CCCCCCCC1CCC(OC(=O)CCCCCCC2)C(C)=N1
InChI Identifier
InChI=1S/C28H46N2O4/c1-21-25-19-17-23(29-21)13-9-5-3-8-12-16-28(32)34-26-20-18-24(30-22(26)2)14-10-6-4-7-11-15-27(31)33-25/h23-26H,3-20H2,1-2H3
InChI KeyOEDAQCLCHGASNH-UHFFFAOYSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as macrolides and analogues. These are organic compounds containing a lactone ring of at least twelve members.
KingdomOrganic compounds
Super ClassPhenylpropanoids and polyketides
ClassMacrolides and analogues
Sub ClassNot Available
Direct ParentMacrolides and analogues
Alternative Parents
Substituents
  • Macrolide
  • Tetrahydropyridine
  • Dicarboxylic acid or derivatives
  • Carboxylic acid ester
  • Ketimine
  • Lactone
  • Carboxylic acid derivative
  • Oxacycle
  • Propargyl-type 1,3-dipolar organic compound
  • Organic 1,3-dipolar compound
  • Organoheterocyclic compound
  • Azacycle
  • Organonitrogen compound
  • Hydrocarbon derivative
  • Organic oxide
  • Organopnictogen compound
  • Organooxygen compound
  • Carbonyl group
  • Organic nitrogen compound
  • Organic oxygen compound
  • Imine
  • Aliphatic heteropolycyclic compound
Molecular FrameworkAliphatic heteropolycyclic compounds
External DescriptorsNot Available
Ontology
Physiological effectNot Available
Disposition
ProcessNot Available
RoleNot Available
Physical Properties
StateNot Available
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
Water Solubility0.00022 g/LALOGPS
logP6.36ALOGPS
logP6.19ChemAxon
logS-6.3ALOGPS
pKa (Strongest Basic)6.25ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count4ChemAxon
Hydrogen Donor Count0ChemAxon
Polar Surface Area77.32 ŲChemAxon
Rotatable Bond Count0ChemAxon
Refractivity133.72 m³·mol⁻¹ChemAxon
Polarizability55.76 ųChemAxon
Number of Rings3ChemAxon
BioavailabilityYesChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
DarkChem[M+H]+211.80531661259
DarkChem[M-H]-207.31531661259
DeepCCS[M+H]+219.25730932474
DeepCCS[M-H]-216.70730932474
DeepCCS[M-2H]-250.81730932474
DeepCCS[M+Na]+226.1730932474
AllCCS[M+H]+226.432859911
AllCCS[M+H-H2O]+224.532859911
AllCCS[M+NH4]+228.032859911
AllCCS[M+Na]+228.532859911
AllCCS[M-H]-219.432859911
AllCCS[M+Na-2H]-221.032859911
AllCCS[M+HCOO]-222.932859911

Predicted Kovats Retention Indices

Underivatized

MetaboliteSMILESKovats RI ValueColumn TypeReference
Dehydrocarpaine IICC1=NC2CCC1OC(=O)CCCCCCCC1CCC(OC(=O)CCCCCCC2)C(C)=N14118.1Standard polar33892256
Dehydrocarpaine IICC1=NC2CCC1OC(=O)CCCCCCCC1CCC(OC(=O)CCCCCCC2)C(C)=N13492.9Standard non polar33892256
Dehydrocarpaine IICC1=NC2CCC1OC(=O)CCCCCCCC1CCC(OC(=O)CCCCCCC2)C(C)=N13665.1Semi standard non polar33892256
Spectra

GC-MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted GC-MSPredicted GC-MS Spectrum - Dehydrocarpaine II GC-MS (Non-derivatized) - 70eV, Positivesplash10-00di-0000900000-3accd908c9724f2c15ae2017-09-01Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Dehydrocarpaine II GC-MS (Non-derivatized) - 70eV, PositiveNot Available2021-10-12Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Dehydrocarpaine II GC-MS (Non-derivatized) - 70eV, PositiveNot Available2021-10-12Wishart LabView Spectrum

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Dehydrocarpaine II 10V, Positive-QTOFsplash10-004i-0000900000-8138c4a4e7d33ee30be12015-04-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Dehydrocarpaine II 20V, Positive-QTOFsplash10-004i-0000900000-60af738bdd5e610b6cac2015-04-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Dehydrocarpaine II 40V, Positive-QTOFsplash10-0a6r-0000900000-878b7ef2fec1a91f66d52015-04-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Dehydrocarpaine II 10V, Negative-QTOFsplash10-00di-0000900000-7b99d3ab3c913e0a18692015-04-25Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Dehydrocarpaine II 20V, Negative-QTOFsplash10-00di-0000900000-0a7bfd854dd36c50f2e42015-04-25Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Dehydrocarpaine II 40V, Negative-QTOFsplash10-0a4i-0000900000-78cfd42aaf05a826f6b02015-04-25Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Dehydrocarpaine II 10V, Positive-QTOFsplash10-004i-0000900000-82ed194c5bbd567e10042021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Dehydrocarpaine II 20V, Positive-QTOFsplash10-004i-0000900000-82ed194c5bbd567e10042021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Dehydrocarpaine II 40V, Positive-QTOFsplash10-0a6r-0000900000-c863ab74294ba76666e52021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Dehydrocarpaine II 10V, Negative-QTOFsplash10-00di-0000900000-980739a83b460aa7e4c72021-09-23Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Dehydrocarpaine II 20V, Negative-QTOFsplash10-00di-0000900000-980739a83b460aa7e4c72021-09-23Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Dehydrocarpaine II 40V, Negative-QTOFsplash10-0a4i-0000900000-63ab5e6de26ed35427992021-09-23Wishart LabView Spectrum
Biological Properties
Cellular Locations
  • Membrane
Biospecimen LocationsNot Available
Tissue LocationsNot Available
Pathways
Normal Concentrations
Not Available
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDFDB002104
KNApSAcK IDC00054513
Chemspider ID35013171
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkMYF6
METLIN IDNot Available
PubChem Compound5318023
PDB IDNot Available
ChEBI ID169208
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General References
  1. (). Yannai, Shmuel. (2004) Dictionary of food compounds with CD-ROM: Additives, flavors, and ingredients. Boca Raton: Chapman & Hall/CRC.. .