| Record Information |
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| Version | 5.0 |
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| Status | Expected but not Quantified |
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| Creation Date | 2012-09-11 17:39:01 UTC |
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| Update Date | 2022-03-07 02:52:41 UTC |
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| HMDB ID | HMDB0030787 |
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| Secondary Accession Numbers | |
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| Metabolite Identification |
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| Common Name | (R)-Marmin |
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| Description | (R)-Marmin, also known as marmin, belongs to the class of organic compounds known as coumarins and derivatives. These are polycyclic aromatic compounds containing a 1-benzopyran moiety with a ketone group at the C2 carbon atom (1-benzopyran-2-one). Based on a literature review very few articles have been published on (R)-Marmin. |
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| Structure | C\C(CCC(O)C(C)(C)O)=C/COC1=CC2=C(C=CC(=O)O2)C=C1 InChI=1S/C19H24O5/c1-13(4-8-17(20)19(2,3)22)10-11-23-15-7-5-14-6-9-18(21)24-16(14)12-15/h5-7,9-10,12,17,20,22H,4,8,11H2,1-3H3/b13-10+ |
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| Synonyms | | Value | Source |
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| 7-(6',7'-Dihydroxygeranyloxy)coumarin | HMDB | | Marmin | HMDB |
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| Chemical Formula | C19H24O5 |
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| Average Molecular Weight | 332.3909 |
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| Monoisotopic Molecular Weight | 332.162373878 |
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| IUPAC Name | 7-{[(2E)-6,7-dihydroxy-3,7-dimethyloct-2-en-1-yl]oxy}-2H-chromen-2-one |
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| Traditional Name | 7-{[(2E)-6,7-dihydroxy-3,7-dimethyloct-2-en-1-yl]oxy}chromen-2-one |
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| CAS Registry Number | 14957-38-1 |
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| SMILES | C\C(CCC(O)C(C)(C)O)=C/COC1=CC2=C(C=CC(=O)O2)C=C1 |
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| InChI Identifier | InChI=1S/C19H24O5/c1-13(4-8-17(20)19(2,3)22)10-11-23-15-7-5-14-6-9-18(21)24-16(14)12-15/h5-7,9-10,12,17,20,22H,4,8,11H2,1-3H3/b13-10+ |
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| InChI Key | QYYKWTUUCOTGNS-JLHYYAGUSA-N |
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| Chemical Taxonomy |
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| Description | Belongs to the class of organic compounds known as coumarins and derivatives. These are polycyclic aromatic compounds containing a 1-benzopyran moiety with a ketone group at the C2 carbon atom (1-benzopyran-2-one). |
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| Kingdom | Organic compounds |
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| Super Class | Phenylpropanoids and polyketides |
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| Class | Coumarins and derivatives |
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| Sub Class | Not Available |
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| Direct Parent | Coumarins and derivatives |
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| Alternative Parents | |
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| Substituents | - Coumarin
- Benzopyran
- 1-benzopyran
- Fatty alcohol
- Alkyl aryl ether
- Pyranone
- Pyran
- Fatty acyl
- Benzenoid
- Tertiary alcohol
- Heteroaromatic compound
- Secondary alcohol
- 1,2-diol
- Lactone
- Oxacycle
- Ether
- Organoheterocyclic compound
- Organooxygen compound
- Hydrocarbon derivative
- Organic oxide
- Alcohol
- Organic oxygen compound
- Aromatic heteropolycyclic compound
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| Molecular Framework | Aromatic heteropolycyclic compounds |
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| External Descriptors | Not Available |
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| Ontology |
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| Physiological effect | Not Available |
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| Disposition | |
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| Process | Not Available |
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| Role | Not Available |
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| Physical Properties |
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| State | Solid |
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| Experimental Molecular Properties | |
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| Experimental Chromatographic Properties | Not Available |
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| Predicted Molecular Properties | |
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| Predicted Chromatographic Properties | Predicted Collision Cross SectionsPredicted Retention Times Underivatized| Chromatographic Method | Retention Time | Reference |
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| Measured using a Waters Acquity ultraperformance liquid chromatography (UPLC) ethylene-bridged hybrid (BEH) C18 column (100 mm × 2.1 mm; 1.7 μmparticle diameter). Predicted by Afia on May 17, 2022. Predicted by Afia on May 17, 2022. | 7.61 minutes | 32390414 | | Predicted by Siyang on May 30, 2022 | 12.728 minutes | 33406817 | | Predicted by Siyang using ReTip algorithm on June 8, 2022 | 1.31 minutes | 32390414 | | AjsUoB = Accucore 150 Amide HILIC with 10mM Ammonium Formate, 0.1% Formic Acid | 38.9 seconds | 40023050 | | Fem_Long = Waters ACQUITY UPLC HSS T3 C18 with Water:MeOH and 0.1% Formic Acid | 2145.7 seconds | 40023050 | | Fem_Lipids = Ascentis Express C18 with (60:40 water:ACN):(90:10 IPA:ACN) and 10mM NH4COOH + 0.1% Formic Acid | 255.4 seconds | 40023050 | | Life_Old = Waters ACQUITY UPLC BEH C18 with Water:(20:80 acetone:ACN) and 0.1% Formic Acid | 185.0 seconds | 40023050 | | Life_New = RP Waters ACQUITY UPLC HSS T3 C18 with Water:(30:70 MeOH:ACN) and 0.1% Formic Acid | 182.8 seconds | 40023050 | | RIKEN = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid | 98.4 seconds | 40023050 | | Eawag_XBridgeC18 = XBridge C18 3.5u 2.1x50 mm with Water:MeOH and 0.1% Formic Acid | 545.1 seconds | 40023050 | | BfG_NTS_RP1 =Agilent Zorbax Eclipse Plus C18 (2.1 mm x 150 mm, 3.5 um) with Water:ACN and 0.1% Formic Acid | 518.4 seconds | 40023050 | | HILIC_BDD_2 = Merck SeQuant ZIC-HILIC with ACN(0.1% formic acid):water(16 mM ammonium formate) | 86.9 seconds | 40023050 | | UniToyama_Atlantis = RP Waters Atlantis T3 (2.1 x 150 mm, 5 um) with ACN:Water and 0.1% Formic Acid | 981.3 seconds | 40023050 | | BDD_C18 = Hypersil Gold 1.9µm C18 with Water:ACN and 0.1% Formic Acid | 447.7 seconds | 40023050 | | UFZ_Phenomenex = Kinetex Core-Shell C18 2.6 um, 3.0 x 100 mm, Phenomenex with Water:MeOH and 0.1% Formic Acid | 1170.5 seconds | 40023050 | | SNU_RIKEN_POS = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid | 358.5 seconds | 40023050 | | RPMMFDA = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid | 345.1 seconds | 40023050 | | MTBLS87 = Merck SeQuant ZIC-pHILIC column with ACN:Water and :ammonium carbonate | 272.9 seconds | 40023050 | | KI_GIAR_zic_HILIC_pH2_7 = Merck SeQuant ZIC-HILIC with ACN:Water and 0.1% FA | 316.3 seconds | 40023050 | | Meister zic-pHILIC pH9.3 = Merck SeQuant ZIC-pHILIC column with ACN:Water 5mM NH4Ac pH9.3 and 5mM ammonium acetate in water | 8.1 seconds | 40023050 |
Predicted Kovats Retention IndicesUnderivatizedDerivatized| Derivative Name / Structure | SMILES | Kovats RI Value | Column Type | Reference |
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| (R)-Marmin,1TMS,isomer #1 | C/C(=C\COC1=CC=C2C=CC(=O)OC2=C1)CCC(O[Si](C)(C)C)C(C)(C)O | 2899.8 | Semi standard non polar | 33892256 | | (R)-Marmin,1TMS,isomer #2 | C/C(=C\COC1=CC=C2C=CC(=O)OC2=C1)CCC(O)C(C)(C)O[Si](C)(C)C | 2929.2 | Semi standard non polar | 33892256 | | (R)-Marmin,2TMS,isomer #1 | C/C(=C\COC1=CC=C2C=CC(=O)OC2=C1)CCC(O[Si](C)(C)C)C(C)(C)O[Si](C)(C)C | 2905.0 | Semi standard non polar | 33892256 | | (R)-Marmin,1TBDMS,isomer #1 | C/C(=C\COC1=CC=C2C=CC(=O)OC2=C1)CCC(O[Si](C)(C)C(C)(C)C)C(C)(C)O | 3137.3 | Semi standard non polar | 33892256 | | (R)-Marmin,1TBDMS,isomer #2 | C/C(=C\COC1=CC=C2C=CC(=O)OC2=C1)CCC(O)C(C)(C)O[Si](C)(C)C(C)(C)C | 3170.9 | Semi standard non polar | 33892256 | | (R)-Marmin,2TBDMS,isomer #1 | C/C(=C\COC1=CC=C2C=CC(=O)OC2=C1)CCC(O[Si](C)(C)C(C)(C)C)C(C)(C)O[Si](C)(C)C(C)(C)C | 3369.0 | Semi standard non polar | 33892256 |
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| GC-MS Spectra| Spectrum Type | Description | Splash Key | Deposition Date | Source | View |
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| Predicted GC-MS | Predicted GC-MS Spectrum - (R)-Marmin GC-MS (Non-derivatized) - 70eV, Positive | splash10-0a4i-9143000000-b5ff0db4041e7dc062eb | 2017-09-01 | Wishart Lab | View Spectrum | | Predicted GC-MS | Predicted GC-MS Spectrum - (R)-Marmin GC-MS (2 TMS) - 70eV, Positive | splash10-01q9-7945800000-8c9e650383310252c022 | 2017-10-06 | Wishart Lab | View Spectrum | | Predicted GC-MS | Predicted GC-MS Spectrum - (R)-Marmin GC-MS (Non-derivatized) - 70eV, Positive | Not Available | 2021-10-12 | Wishart Lab | View Spectrum |
MS/MS Spectra| Spectrum Type | Description | Splash Key | Deposition Date | Source | View |
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| Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - (R)-Marmin 10V, Positive-QTOF | splash10-00lr-0449000000-8f29fd82e4fbc34a65b0 | 2016-06-20 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - (R)-Marmin 20V, Positive-QTOF | splash10-0ho4-4953000000-cbdfa7bea484157cac74 | 2016-06-20 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - (R)-Marmin 40V, Positive-QTOF | splash10-029i-9510000000-10ae74648a914da7ce39 | 2016-06-20 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - (R)-Marmin 10V, Negative-QTOF | splash10-01q9-0339000000-749a91054b580eab2a7f | 2016-08-03 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - (R)-Marmin 20V, Negative-QTOF | splash10-03di-0922000000-2f3a91d3a9f1feaafea2 | 2016-08-03 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - (R)-Marmin 40V, Negative-QTOF | splash10-014i-2900000000-f84d9eca03ab7d47cc7b | 2016-08-03 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - (R)-Marmin 10V, Positive-QTOF | splash10-00kb-0169000000-be0c48ffd91e02a405b3 | 2021-09-22 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - (R)-Marmin 20V, Positive-QTOF | splash10-01ot-2791000000-6baf219959ed30ec432c | 2021-09-22 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - (R)-Marmin 40V, Positive-QTOF | splash10-03yi-9720000000-66bddcd59fad62417f43 | 2021-09-22 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - (R)-Marmin 10V, Negative-QTOF | splash10-03e9-0908000000-8caa6681bef0b936a33b | 2021-09-22 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - (R)-Marmin 20V, Negative-QTOF | splash10-03di-2910000000-0423cce82b9ab500649f | 2021-09-22 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - (R)-Marmin 40V, Negative-QTOF | splash10-0159-0900000000-33d87450be29b1aedac5 | 2021-09-22 | Wishart Lab | View Spectrum |
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