Hmdb loader
Record Information
Version5.0
StatusExpected but not Quantified
Creation Date2012-09-11 17:40:42 UTC
Update Date2023-02-21 17:19:52 UTC
HMDB IDHMDB0031055
Secondary Accession Numbers
  • HMDB31055
Metabolite Identification
Common Name(Z)-10-Hydroxy-8-decene-4,6-diynoic acid
Description(Z)-10-Hydroxy-8-decene-4,6-diynoic acid, also known as (Z)-helianthenate F, belongs to the class of organic compounds known as medium-chain fatty acids. These are fatty acids with an aliphatic tail that contains between 4 and 12 carbon atoms. Based on a literature review a small amount of articles have been published on (Z)-10-Hydroxy-8-decene-4,6-diynoic acid.
Structure
Data?1676999992
Synonyms
ValueSource
(Z)-10-Hydroxy-8-decene-4,6-diynoateGenerator
10-Hydroxy-8Z-decene-4,6-diynoateHMDB
(Z)-Helianthenate FHMDB
Chemical FormulaC10H10O3
Average Molecular Weight178.1846
Monoisotopic Molecular Weight178.062994186
IUPAC Name(8Z)-10-hydroxydec-8-en-4,6-diynoic acid
Traditional Name(8Z)-10-hydroxydec-8-en-4,6-diynoic acid
CAS Registry Number51193-97-6
SMILES
OC\C=C/C#CC#CCCC(O)=O
InChI Identifier
InChI=1S/C10H10O3/c11-9-7-5-3-1-2-4-6-8-10(12)13/h5,7,11H,6,8-9H2,(H,12,13)/b7-5-
InChI KeyJIPUTTVWDAXSEZ-ALCCZGGFSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as medium-chain fatty acids. These are fatty acids with an aliphatic tail that contains between 4 and 12 carbon atoms.
KingdomOrganic compounds
Super ClassLipids and lipid-like molecules
ClassFatty Acyls
Sub ClassFatty acids and conjugates
Direct ParentMedium-chain fatty acids
Alternative Parents
Substituents
  • Medium-chain fatty acid
  • Hydroxy fatty acid
  • Unsaturated fatty acid
  • Straight chain fatty acid
  • Monocarboxylic acid or derivatives
  • Carboxylic acid
  • Carboxylic acid derivative
  • Organic oxygen compound
  • Organic oxide
  • Hydrocarbon derivative
  • Primary alcohol
  • Organooxygen compound
  • Carbonyl group
  • Alcohol
  • Aliphatic acyclic compound
Molecular FrameworkAliphatic acyclic compounds
External Descriptors
Ontology
Physiological effectNot Available
Disposition
Process
Role
Physical Properties
StateNot Available
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
Water Solubility0.087 g/LALOGPS
logP1.27ALOGPS
logP1.12ChemAxon
logS-3.3ALOGPS
pKa (Strongest Acidic)3.58ChemAxon
pKa (Strongest Basic)-2.5ChemAxon
Physiological Charge-1ChemAxon
Hydrogen Acceptor Count3ChemAxon
Hydrogen Donor Count2ChemAxon
Polar Surface Area57.53 ŲChemAxon
Rotatable Bond Count6ChemAxon
Refractivity51.09 m³·mol⁻¹ChemAxon
Polarizability18.95 ųChemAxon
Number of Rings0ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterYesChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
DarkChem[M+H]+144.55631661259
DarkChem[M-H]-142.38831661259
DeepCCS[M+H]+130.50130932474
DeepCCS[M-H]-126.67230932474
DeepCCS[M-2H]-163.72930932474
DeepCCS[M+Na]+139.22430932474
AllCCS[M+H]+137.932859911
AllCCS[M+H-H2O]+134.032859911
AllCCS[M+NH4]+141.532859911
AllCCS[M+Na]+142.632859911
AllCCS[M-H]-139.032859911
AllCCS[M+Na-2H]-140.132859911
AllCCS[M+HCOO]-141.432859911

Predicted Kovats Retention Indices

Underivatized

MetaboliteSMILESKovats RI ValueColumn TypeReference
(Z)-10-Hydroxy-8-decene-4,6-diynoic acidOC\C=C/C#CC#CCCC(O)=O2940.3Standard polar33892256
(Z)-10-Hydroxy-8-decene-4,6-diynoic acidOC\C=C/C#CC#CCCC(O)=O1703.3Standard non polar33892256
(Z)-10-Hydroxy-8-decene-4,6-diynoic acidOC\C=C/C#CC#CCCC(O)=O1836.3Semi standard non polar33892256

Derivatized

Derivative Name / StructureSMILESKovats RI ValueColumn TypeReference
(Z)-10-Hydroxy-8-decene-4,6-diynoic acid,1TMS,isomer #1C[Si](C)(C)OC/C=C\C#CC#CCCC(=O)O1946.3Semi standard non polar33892256
(Z)-10-Hydroxy-8-decene-4,6-diynoic acid,1TMS,isomer #2C[Si](C)(C)OC(=O)CCC#CC#C/C=C\CO1867.0Semi standard non polar33892256
(Z)-10-Hydroxy-8-decene-4,6-diynoic acid,2TMS,isomer #1C[Si](C)(C)OC/C=C\C#CC#CCCC(=O)O[Si](C)(C)C2004.7Semi standard non polar33892256
(Z)-10-Hydroxy-8-decene-4,6-diynoic acid,1TBDMS,isomer #1CC(C)(C)[Si](C)(C)OC/C=C\C#CC#CCCC(=O)O2176.3Semi standard non polar33892256
(Z)-10-Hydroxy-8-decene-4,6-diynoic acid,1TBDMS,isomer #2CC(C)(C)[Si](C)(C)OC(=O)CCC#CC#C/C=C\CO2102.9Semi standard non polar33892256
(Z)-10-Hydroxy-8-decene-4,6-diynoic acid,2TBDMS,isomer #1CC(C)(C)[Si](C)(C)OC/C=C\C#CC#CCCC(=O)O[Si](C)(C)C(C)(C)C2415.6Semi standard non polar33892256
Spectra

GC-MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted GC-MSPredicted GC-MS Spectrum - (Z)-10-Hydroxy-8-decene-4,6-diynoic acid GC-MS (Non-derivatized) - 70eV, Positivesplash10-0ilc-3900000000-6bd34cc816a95acb7e332017-09-01Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - (Z)-10-Hydroxy-8-decene-4,6-diynoic acid GC-MS (2 TMS) - 70eV, Positivesplash10-05j3-9361000000-b4d22d555ed141ce08702017-10-06Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - (Z)-10-Hydroxy-8-decene-4,6-diynoic acid GC-MS (Non-derivatized) - 70eV, PositiveNot Available2021-10-12Wishart LabView Spectrum

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (Z)-10-Hydroxy-8-decene-4,6-diynoic acid 10V, Positive-QTOFsplash10-03fr-0900000000-cf8b38307f25f09a03322016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (Z)-10-Hydroxy-8-decene-4,6-diynoic acid 20V, Positive-QTOFsplash10-02tc-2900000000-1d0379f462e619bbce462016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (Z)-10-Hydroxy-8-decene-4,6-diynoic acid 40V, Positive-QTOFsplash10-0v00-9300000000-2866d78469fc907e3ace2016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (Z)-10-Hydroxy-8-decene-4,6-diynoic acid 10V, Negative-QTOFsplash10-004i-0900000000-1ba883145fd2122d7b4f2016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (Z)-10-Hydroxy-8-decene-4,6-diynoic acid 20V, Negative-QTOFsplash10-056r-2900000000-e92191ccfa136abb112e2016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (Z)-10-Hydroxy-8-decene-4,6-diynoic acid 40V, Negative-QTOFsplash10-052f-9500000000-8bf033cf2168101c6b0a2016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (Z)-10-Hydroxy-8-decene-4,6-diynoic acid 10V, Positive-QTOFsplash10-00n0-7900000000-85cd67c05b24aa8d7c5b2021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (Z)-10-Hydroxy-8-decene-4,6-diynoic acid 20V, Positive-QTOFsplash10-004r-9300000000-2ce313a5eeba5966d27c2021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (Z)-10-Hydroxy-8-decene-4,6-diynoic acid 40V, Positive-QTOFsplash10-004r-9200000000-939728b52f2f7709a6ab2021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (Z)-10-Hydroxy-8-decene-4,6-diynoic acid 10V, Negative-QTOFsplash10-004i-0900000000-7481e6c74c4c2d2def192021-09-23Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (Z)-10-Hydroxy-8-decene-4,6-diynoic acid 20V, Negative-QTOFsplash10-0pyi-2900000000-5f34cefba25c54263b2a2021-09-23Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (Z)-10-Hydroxy-8-decene-4,6-diynoic acid 40V, Negative-QTOFsplash10-029i-9300000000-e2000db9c391618562052021-09-23Wishart LabView Spectrum

IR Spectra

Spectrum TypeDescriptionDeposition DateSourceView
Predicted IR SpectrumIR Ion Spectrum (Predicted IRIS Spectrum, Adduct: [M-H]-)2023-02-03FELIX labView Spectrum
Predicted IR SpectrumIR Ion Spectrum (Predicted IRIS Spectrum, Adduct: [M+H]+)2023-02-03FELIX labView Spectrum
Biological Properties
Cellular Locations
  • Cytoplasm
  • Extracellular
Biospecimen LocationsNot Available
Tissue LocationsNot Available
Pathways
Normal Concentrations
Not Available
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDFDB003056
KNApSAcK IDNot Available
Chemspider ID7822572
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound9543622
PDB IDNot Available
ChEBI IDNot Available
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General References
  1. Simons K, Toomre D: Lipid rafts and signal transduction. Nat Rev Mol Cell Biol. 2000 Oct;1(1):31-9. [PubMed:11413487 ]
  2. Watson AD: Thematic review series: systems biology approaches to metabolic and cardiovascular disorders. Lipidomics: a global approach to lipid analysis in biological systems. J Lipid Res. 2006 Oct;47(10):2101-11. Epub 2006 Aug 10. [PubMed:16902246 ]
  3. Sethi JK, Vidal-Puig AJ: Thematic review series: adipocyte biology. Adipose tissue function and plasticity orchestrate nutritional adaptation. J Lipid Res. 2007 Jun;48(6):1253-62. Epub 2007 Mar 20. [PubMed:17374880 ]
  4. Lingwood D, Simons K: Lipid rafts as a membrane-organizing principle. Science. 2010 Jan 1;327(5961):46-50. doi: 10.1126/science.1174621. [PubMed:20044567 ]
  5. (). Yannai, Shmuel. (2004) Dictionary of food compounds with CD-ROM: Additives, flavors, and ingredients. Boca Raton: Chapman & Hall/CRC.. .
  6. Gunstone, Frank D., John L. Harwood, and Albert J. Dijkstra (2007). The lipid handbook with CD-ROM. CRC Press.