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Record Information
Version5.0
StatusExpected but not Quantified
Creation Date2012-09-11 17:45:37 UTC
Update Date2022-03-07 02:53:07 UTC
HMDB IDHMDB0031812
Secondary Accession Numbers
  • HMDB31812
Metabolite Identification
Common NameOxfendazole
DescriptionOxfendazole, also known as synanthic or OFDZ, belongs to the class of organic compounds known as benzimidazoles. These are organic compounds containing a benzene ring fused to an imidazole ring (five member ring containing a nitrogen atom, 4 carbon atoms, and two double bonds). Based on a literature review very few articles have been published on Oxfendazole.
Structure
Data?1563862174
Synonyms
ValueSource
(5-(Phenylsulfinyl)-1H-benzimidazol-2-yl)carbamic acid methyl esterChEBI
5-(Phenylsulfinyl)-2-benzimidazolecarbamic acid methyl esterChEBI
5-Phenylsulfinyl-2-carbomethoxyaminobenzimidazoleChEBI
Fenbendazole S-oxideChEBI
Fenbendazole sulfoxideChEBI
OFDZChEBI
SynanthicKegg
(5-(Phenylsulfinyl)-1H-benzimidazol-2-yl)carbamate methyl esterGenerator
(5-(Phenylsulphinyl)-1H-benzimidazol-2-yl)carbamate methyl esterGenerator
(5-(Phenylsulphinyl)-1H-benzimidazol-2-yl)carbamic acid methyl esterGenerator
5-(Phenylsulfinyl)-2-benzimidazolecarbamate methyl esterGenerator
5-(Phenylsulphinyl)-2-benzimidazolecarbamate methyl esterGenerator
5-(Phenylsulphinyl)-2-benzimidazolecarbamic acid methyl esterGenerator
5-Phenylsulphinyl-2-carbomethoxyaminobenzimidazoleGenerator
Fenbendazole sulphoxideGenerator
BenzelminHMDB
Methyl (5-phenylsulfinyl)-1H-benzimidazol-2-yl carbamateHMDB
Methyl 5(6)-phenylsulfinyl-2-benzimidazolecarbamateHMDB
Methyl 5-(phenylsulfinyl)-2-benzimidazolecarbamateHMDB
Methyl 5-(phenylsulfinyl)-benzimidazol-2-carbamateHMDB
Methyl [5-(phenylsulfinyl)-1H-benzimidazol-2-yl]carbamateHMDB
Methyl [5-(phenylsulfinyl)-1H-benzimidazol-2-yl]carbamate, 9ciHMDB
NanthicHMDB
OxfendazolHMDB
OxfendazolumHMDB
RepidoseHMDB
RS 8858HMDB
Synanthic (veterinary)HMDB
SystamexHMDB
SystemaxHMDB
FBZ-SOHMDB
Oxfendazole monohydrochlorideHMDB
Chemical FormulaC15H13N3O3S
Average Molecular Weight315.347
Monoisotopic Molecular Weight315.067761987
IUPAC Namemethyl N-[5-(benzenesulfinyl)-1H-1,3-benzodiazol-2-yl]carbamate
Traditional Nameoxfendazole
CAS Registry Number53716-50-0
SMILES
COC(=O)NC1=NC2=CC(=CC=C2N1)S(=O)C1=CC=CC=C1
InChI Identifier
InChI=1S/C15H13N3O3S/c1-21-15(19)18-14-16-12-8-7-11(9-13(12)17-14)22(20)10-5-3-2-4-6-10/h2-9H,1H3,(H2,16,17,18,19)
InChI KeyBEZZFPOZAYTVHN-UHFFFAOYSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as benzimidazoles. These are organic compounds containing a benzene ring fused to an imidazole ring (five member ring containing a nitrogen atom, 4 carbon atoms, and two double bonds).
KingdomOrganic compounds
Super ClassOrganoheterocyclic compounds
ClassBenzimidazoles
Sub ClassNot Available
Direct ParentBenzimidazoles
Alternative Parents
Substituents
  • Phenyl sulfoxide
  • Benzimidazole
  • Monocyclic benzene moiety
  • Benzenoid
  • Azole
  • Imidazole
  • Heteroaromatic compound
  • Sulfoxide
  • Azacycle
  • Organic 1,3-dipolar compound
  • Propargyl-type 1,3-dipolar organic compound
  • Sulfinyl compound
  • Carboximidic acid derivative
  • Organopnictogen compound
  • Organosulfur compound
  • Organooxygen compound
  • Organonitrogen compound
  • Organic oxygen compound
  • Organic nitrogen compound
  • Hydrocarbon derivative
  • Organic oxide
  • Aromatic heteropolycyclic compound
Molecular FrameworkAromatic heteropolycyclic compounds
External Descriptors
Ontology
Physiological effectNot Available
Disposition
ProcessNot Available
Role
Physical Properties
StateSolid
Experimental Molecular Properties
PropertyValueReference
Melting Point253 °CNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic Properties

Experimental Collision Cross Sections

Adduct TypeData SourceCCS Value (Å2)Reference
[M+H]+Not Available174.059http://allccs.zhulab.cn/database/detail?ID=AllCCS00001058
Predicted Molecular Properties
PropertyValueSource
Water Solubility0.39 g/LALOGPS
logP2.16ALOGPS
logP2.62ChemAxon
logS-2.9ALOGPS
pKa (Strongest Acidic)9.26ChemAxon
pKa (Strongest Basic)3.57ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count4ChemAxon
Hydrogen Donor Count2ChemAxon
Polar Surface Area84.08 ŲChemAxon
Rotatable Bond Count4ChemAxon
Refractivity84.98 m³·mol⁻¹ChemAxon
Polarizability32.4 ųChemAxon
Number of Rings3ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterYesChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
DarkChem[M+H]+175.32531661259
DarkChem[M-H]-175.0531661259
DeepCCS[M+H]+172.48330932474
DeepCCS[M-H]-170.12530932474
DeepCCS[M-2H]-203.72630932474
DeepCCS[M+Na]+178.95330932474
AllCCS[M+H]+171.332859911
AllCCS[M+H-H2O]+168.232859911
AllCCS[M+NH4]+174.332859911
AllCCS[M+Na]+175.132859911
AllCCS[M-H]-170.732859911
AllCCS[M+Na-2H]-169.932859911
AllCCS[M+HCOO]-169.232859911

Predicted Retention Times

Underivatized

Chromatographic MethodRetention TimeReference
Measured using a Waters Acquity ultraperformance liquid chromatography (UPLC) ethylene-bridged hybrid (BEH) C18 column (100 mm × 2.1 mm; 1.7 μmparticle diameter). Predicted by Afia on May 17, 2022. Predicted by Afia on May 17, 2022.6.89 minutes32390414
Predicted by Siyang on May 30, 202211.8517 minutes33406817
Predicted by Siyang using ReTip algorithm on June 8, 20221.26 minutes32390414
AjsUoB = Accucore 150 Amide HILIC with 10mM Ammonium Formate, 0.1% Formic Acid29.1 seconds40023050
Fem_Long = Waters ACQUITY UPLC HSS T3 C18 with Water:MeOH and 0.1% Formic Acid2176.7 seconds40023050
Fem_Lipids = Ascentis Express C18 with (60:40 water:ACN):(90:10 IPA:ACN) and 10mM NH4COOH + 0.1% Formic Acid291.2 seconds40023050
Life_Old = Waters ACQUITY UPLC BEH C18 with Water:(20:80 acetone:ACN) and 0.1% Formic Acid145.4 seconds40023050
Life_New = RP Waters ACQUITY UPLC HSS T3 C18 with Water:(30:70 MeOH:ACN) and 0.1% Formic Acid180.6 seconds40023050
RIKEN = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid110.2 seconds40023050
Eawag_XBridgeC18 = XBridge C18 3.5u 2.1x50 mm with Water:MeOH and 0.1% Formic Acid564.5 seconds40023050
BfG_NTS_RP1 =Agilent Zorbax Eclipse Plus C18 (2.1 mm x 150 mm, 3.5 um) with Water:ACN and 0.1% Formic Acid507.1 seconds40023050
HILIC_BDD_2 = Merck SeQuant ZIC-HILIC with ACN(0.1% formic acid):water(16 mM ammonium formate)124.5 seconds40023050
UniToyama_Atlantis = RP Waters Atlantis T3 (2.1 x 150 mm, 5 um) with ACN:Water and 0.1% Formic Acid973.9 seconds40023050
BDD_C18 = Hypersil Gold 1.9µm C18 with Water:ACN and 0.1% Formic Acid449.8 seconds40023050
UFZ_Phenomenex = Kinetex Core-Shell C18 2.6 um, 3.0 x 100 mm, Phenomenex with Water:MeOH and 0.1% Formic Acid1291.0 seconds40023050
SNU_RIKEN_POS = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid285.0 seconds40023050
RPMMFDA = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid329.3 seconds40023050
MTBLS87 = Merck SeQuant ZIC-pHILIC column with ACN:Water and :ammonium carbonate264.1 seconds40023050
KI_GIAR_zic_HILIC_pH2_7 = Merck SeQuant ZIC-HILIC with ACN:Water and 0.1% FA152.4 seconds40023050
Meister zic-pHILIC pH9.3 = Merck SeQuant ZIC-pHILIC column with ACN:Water 5mM NH4Ac pH9.3 and 5mM ammonium acetate in water128.1 seconds40023050

Predicted Kovats Retention Indices

Underivatized

MetaboliteSMILESKovats RI ValueColumn TypeReference
OxfendazoleCOC(=O)NC1=NC2=CC(=CC=C2N1)S(=O)C1=CC=CC=C14390.4Standard polar33892256
OxfendazoleCOC(=O)NC1=NC2=CC(=CC=C2N1)S(=O)C1=CC=CC=C12653.9Standard non polar33892256
OxfendazoleCOC(=O)NC1=NC2=CC(=CC=C2N1)S(=O)C1=CC=CC=C13215.1Semi standard non polar33892256

Derivatized

Derivative Name / StructureSMILESKovats RI ValueColumn TypeReference
Oxfendazole,1TMS,isomer #1COC(=O)N(C1=NC2=CC(S(=O)C3=CC=CC=C3)=CC=C2[NH]1)[Si](C)(C)C2804.5Semi standard non polar33892256
Oxfendazole,1TMS,isomer #1COC(=O)N(C1=NC2=CC(S(=O)C3=CC=CC=C3)=CC=C2[NH]1)[Si](C)(C)C2702.2Standard non polar33892256
Oxfendazole,1TMS,isomer #2COC(=O)NC1=NC2=CC(S(=O)C3=CC=CC=C3)=CC=C2N1[Si](C)(C)C2902.4Semi standard non polar33892256
Oxfendazole,1TMS,isomer #2COC(=O)NC1=NC2=CC(S(=O)C3=CC=CC=C3)=CC=C2N1[Si](C)(C)C2652.2Standard non polar33892256
Oxfendazole,2TMS,isomer #1COC(=O)N(C1=NC2=CC(S(=O)C3=CC=CC=C3)=CC=C2N1[Si](C)(C)C)[Si](C)(C)C2852.5Semi standard non polar33892256
Oxfendazole,2TMS,isomer #1COC(=O)N(C1=NC2=CC(S(=O)C3=CC=CC=C3)=CC=C2N1[Si](C)(C)C)[Si](C)(C)C2708.9Standard non polar33892256
Oxfendazole,1TBDMS,isomer #1COC(=O)N(C1=NC2=CC(S(=O)C3=CC=CC=C3)=CC=C2[NH]1)[Si](C)(C)C(C)(C)C3026.6Semi standard non polar33892256
Oxfendazole,1TBDMS,isomer #1COC(=O)N(C1=NC2=CC(S(=O)C3=CC=CC=C3)=CC=C2[NH]1)[Si](C)(C)C(C)(C)C2913.3Standard non polar33892256
Oxfendazole,1TBDMS,isomer #2COC(=O)NC1=NC2=CC(S(=O)C3=CC=CC=C3)=CC=C2N1[Si](C)(C)C(C)(C)C3119.2Semi standard non polar33892256
Oxfendazole,1TBDMS,isomer #2COC(=O)NC1=NC2=CC(S(=O)C3=CC=CC=C3)=CC=C2N1[Si](C)(C)C(C)(C)C2908.5Standard non polar33892256
Oxfendazole,2TBDMS,isomer #1COC(=O)N(C1=NC2=CC(S(=O)C3=CC=CC=C3)=CC=C2N1[Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C3221.4Semi standard non polar33892256
Oxfendazole,2TBDMS,isomer #1COC(=O)N(C1=NC2=CC(S(=O)C3=CC=CC=C3)=CC=C2N1[Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C3205.2Standard non polar33892256
Spectra

GC-MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted GC-MSPredicted GC-MS Spectrum - Oxfendazole GC-MS (Non-derivatized) - 70eV, Positivesplash10-056r-0691000000-9035b2a3bd038f0c5b1c2017-09-01Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Oxfendazole GC-MS (Non-derivatized) - 70eV, PositiveNot Available2021-10-12Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Oxfendazole GC-MS (Non-derivatized) - 70eV, PositiveNot Available2021-10-12Wishart LabView Spectrum

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Experimental LC-MS/MSLC-MS/MS Spectrum - Oxfendazole LC-ESI-QTOF , positive-QTOFsplash10-014i-0009000000-b75f3a06f0da46a116582017-09-14HMDB team, MONAView Spectrum
Experimental LC-MS/MSLC-MS/MS Spectrum - Oxfendazole LC-ESI-QTOF , positive-QTOFsplash10-014i-0569000000-1ffed3cf65a96a10e68b2017-09-14HMDB team, MONAView Spectrum
Experimental LC-MS/MSLC-MS/MS Spectrum - Oxfendazole LC-ESI-QTOF , positive-QTOFsplash10-0a4l-0950000000-c9aa9d43cb60924d738a2017-09-14HMDB team, MONAView Spectrum
Experimental LC-MS/MSLC-MS/MS Spectrum - Oxfendazole LC-ESI-QTOF , positive-QTOFsplash10-0a4i-0930000000-21e6ac8aab5ac86d04922017-09-14HMDB team, MONAView Spectrum
Experimental LC-MS/MSLC-MS/MS Spectrum - Oxfendazole LC-ESI-QTOF , positive-QTOFsplash10-0a4i-0920000000-107b63eb5ae48e71a66f2017-09-14HMDB team, MONAView Spectrum
Experimental LC-MS/MSLC-MS/MS Spectrum - Oxfendazole LC-ESI-QTOF , positive-QTOFsplash10-014s-0900000000-4e25d758cb49f67ae07e2017-09-14HMDB team, MONAView Spectrum
Experimental LC-MS/MSLC-MS/MS Spectrum - Oxfendazole , positive-QTOFsplash10-066u-2965000000-a70e1a64ce45c89ae19a2017-09-14HMDB team, MONAView Spectrum
Experimental LC-MS/MSLC-MS/MS Spectrum - Oxfendazole 30V, Positive-QTOFsplash10-0f89-0090000000-1e3bd3e106b053cbbf2f2021-09-20HMDB team, MONAView Spectrum
Experimental LC-MS/MSLC-MS/MS Spectrum - Oxfendazole 50V, Positive-QTOFsplash10-0a4i-0920000000-f3a99d53ef7456bd49d92021-09-20HMDB team, MONAView Spectrum
Experimental LC-MS/MSLC-MS/MS Spectrum - Oxfendazole 30V, Positive-QTOFsplash10-0a4l-0950000000-f57e37e01b1d5206e0a92021-09-20HMDB team, MONAView Spectrum
Experimental LC-MS/MSLC-MS/MS Spectrum - Oxfendazole 90V, Positive-QTOFsplash10-0536-0900000000-fdc53426997d12e8f5512021-09-20HMDB team, MONAView Spectrum
Experimental LC-MS/MSLC-MS/MS Spectrum - Oxfendazole 30V, Positive-QTOFsplash10-0a4l-0950000000-e24abf8fa0d069c362962021-09-20HMDB team, MONAView Spectrum
Experimental LC-MS/MSLC-MS/MS Spectrum - Oxfendazole 40V, Positive-QTOFsplash10-0a4i-0930000000-586fffdebb59e955afdf2021-09-20HMDB team, MONAView Spectrum
Experimental LC-MS/MSLC-MS/MS Spectrum - Oxfendazole 20V, Positive-QTOFsplash10-014i-0569000000-5bf604085f3f754ebeb82021-09-20HMDB team, MONAView Spectrum
Experimental LC-MS/MSLC-MS/MS Spectrum - Oxfendazole 10V, Positive-QTOFsplash10-014i-0009000000-b75f3a06f0da46a116582021-09-20HMDB team, MONAView Spectrum
Experimental LC-MS/MSLC-MS/MS Spectrum - Oxfendazole 50V, Positive-QTOFsplash10-0a4i-0920000000-1b968a6e45d46948fa6b2021-09-20HMDB team, MONAView Spectrum
Experimental LC-MS/MSLC-MS/MS Spectrum - Oxfendazole 15V, Positive-QTOFsplash10-014i-0009000000-6471984819e50d4244c82021-09-20HMDB team, MONAView Spectrum
Experimental LC-MS/MSLC-MS/MS Spectrum - Oxfendazole 45V, Positive-QTOFsplash10-0596-0980000000-7dcc359382ff0ab275e62021-09-20HMDB team, MONAView Spectrum
Experimental LC-MS/MSLC-MS/MS Spectrum - Oxfendazole 30V, Positive-QTOFsplash10-01c3-0394000000-a68ff8b23fb3e72a38392021-09-20HMDB team, MONAView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Oxfendazole 10V, Positive-QTOFsplash10-014i-0159000000-8daa12d259117e8249a72016-08-01Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Oxfendazole 20V, Positive-QTOFsplash10-0a59-0091000000-49724120fa7b66dc3b3d2016-08-01Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Oxfendazole 40V, Positive-QTOFsplash10-001i-3940000000-1d3df6978b0eacae5e5f2016-08-01Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Oxfendazole 10V, Negative-QTOFsplash10-06si-4295000000-5c34ca9f4d451e556c9b2016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Oxfendazole 20V, Negative-QTOFsplash10-003r-3592000000-375e32dae9d8734826d02016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Oxfendazole 40V, Negative-QTOFsplash10-004i-1910000000-6d05c8ed2b771d3fed142016-08-03Wishart LabView Spectrum
Biological Properties
Cellular Locations
  • Cytoplasm
  • Extracellular
Biospecimen LocationsNot Available
Tissue LocationsNot Available
Pathways
Normal Concentrations
Not Available
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDDB11446
Phenol Explorer Compound IDNot Available
FooDB IDFDB008486
KNApSAcK IDNot Available
Chemspider ID37316
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkOxfendazole
METLIN IDNot Available
PubChem Compound40854
PDB IDNot Available
ChEBI ID35812
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Download (PDF)
General References
  1. (). Yannai, Shmuel. (2004) Dictionary of food compounds with CD-ROM: Additives, flavors, and ingredients. Boca Raton: Chapman & Hall/CRC.. .