Record Information |
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Version | 5.0 |
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Status | Expected but not Quantified |
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Creation Date | 2012-09-11 18:28:30 UTC |
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Update Date | 2023-02-21 17:23:32 UTC |
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HMDB ID | HMDB0033717 |
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Secondary Accession Numbers | |
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Metabolite Identification |
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Common Name | (1R,2R)-Isocitric acid |
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Description | (1R,2R)-Isocitric acid, also known as (1R,2R)-isocitrate, belongs to the class of organic compounds known as tricarboxylic acids and derivatives. These are carboxylic acids containing exactly three carboxyl groups (1R,2R)-Isocitric acid has been detected, but not quantified in, citrus. This could make (1R,2R)-isocitric acid a potential biomarker for the consumption of these foods. Based on a literature review very few articles have been published on (1R,2R)-Isocitric acid. |
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Structure | O[C@H]([C@@H](CC(O)=O)C(O)=O)C(O)=O InChI=1S/C6H8O7/c7-3(8)1-2(5(10)11)4(9)6(12)13/h2,4,9H,1H2,(H,7,8)(H,10,11)(H,12,13)/t2-,4-/m1/s1 |
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Synonyms | Value | Source |
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(1R,2R)-Isocitrate | Generator | (-)-Alloisocitric acid | HMDB | (-)-erythro-Form | HMDB | 3-Carboxy-2,3-dideoxy-D-erythro-pentaric acid | HMDB | D-erythro-Isocitric acid | HMDB | Isocitric acid | HMDB | L-Erythro-isocitrate | Generator |
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Chemical Formula | C6H8O7 |
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Average Molecular Weight | 192.1235 |
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Monoisotopic Molecular Weight | 192.02700261 |
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IUPAC Name | (1R,2R)-1-hydroxypropane-1,2,3-tricarboxylic acid |
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Traditional Name | L-erythro-isocitric acid |
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CAS Registry Number | 30810-51-6 |
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SMILES | O[C@H]([C@@H](CC(O)=O)C(O)=O)C(O)=O |
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InChI Identifier | InChI=1S/C6H8O7/c7-3(8)1-2(5(10)11)4(9)6(12)13/h2,4,9H,1H2,(H,7,8)(H,10,11)(H,12,13)/t2-,4-/m1/s1 |
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InChI Key | ODBLHEXUDAPZAU-VVJJHMBFSA-N |
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Chemical Taxonomy |
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Description | Belongs to the class of organic compounds known as tricarboxylic acids and derivatives. These are carboxylic acids containing exactly three carboxyl groups. |
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Kingdom | Organic compounds |
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Super Class | Organic acids and derivatives |
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Class | Carboxylic acids and derivatives |
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Sub Class | Tricarboxylic acids and derivatives |
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Direct Parent | Tricarboxylic acids and derivatives |
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Alternative Parents | |
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Substituents | - Tricarboxylic acid or derivatives
- Beta-hydroxy acid
- Monosaccharide
- Hydroxy acid
- Alpha-hydroxy acid
- Secondary alcohol
- Carboxylic acid
- Organic oxygen compound
- Organic oxide
- Hydrocarbon derivative
- Organooxygen compound
- Carbonyl group
- Alcohol
- Aliphatic acyclic compound
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Molecular Framework | Aliphatic acyclic compounds |
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External Descriptors | |
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Ontology |
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Physiological effect | Not Available |
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Disposition | |
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Process | Not Available |
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Role | |
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Physical Properties |
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State | Not Available |
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Experimental Molecular Properties | Property | Value | Reference |
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Melting Point | Not Available | Not Available | Boiling Point | Not Available | Not Available | Water Solubility | Not Available | Not Available | LogP | Not Available | Not Available |
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Experimental Chromatographic Properties | Not Available |
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Predicted Molecular Properties | |
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Predicted Chromatographic Properties | Predicted Collision Cross SectionsPredicted Kovats Retention IndicesUnderivatizedDerivatizedDerivative Name / Structure | SMILES | Kovats RI Value | Column Type | Reference |
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(1R,2R)-Isocitric acid,1TMS,isomer #1 | C[Si](C)(C)O[C@@H](C(=O)O)[C@@H](CC(=O)O)C(=O)O | 1641.8 | Semi standard non polar | 33892256 | (1R,2R)-Isocitric acid,1TMS,isomer #2 | C[Si](C)(C)OC(=O)C[C@@H](C(=O)O)[C@@H](O)C(=O)O | 1646.8 | Semi standard non polar | 33892256 | (1R,2R)-Isocitric acid,1TMS,isomer #3 | C[Si](C)(C)OC(=O)[C@H](CC(=O)O)[C@@H](O)C(=O)O | 1629.7 | Semi standard non polar | 33892256 | (1R,2R)-Isocitric acid,1TMS,isomer #4 | C[Si](C)(C)OC(=O)[C@H](O)[C@@H](CC(=O)O)C(=O)O | 1640.3 | Semi standard non polar | 33892256 | (1R,2R)-Isocitric acid,2TMS,isomer #1 | C[Si](C)(C)OC(=O)[C@H](O[Si](C)(C)C)[C@@H](CC(=O)O)C(=O)O | 1694.8 | Semi standard non polar | 33892256 | (1R,2R)-Isocitric acid,2TMS,isomer #2 | C[Si](C)(C)OC(=O)C[C@@H](C(=O)O)[C@@H](O[Si](C)(C)C)C(=O)O | 1709.3 | Semi standard non polar | 33892256 | (1R,2R)-Isocitric acid,2TMS,isomer #3 | C[Si](C)(C)OC(=O)[C@H](CC(=O)O)[C@@H](O[Si](C)(C)C)C(=O)O | 1698.4 | Semi standard non polar | 33892256 | (1R,2R)-Isocitric acid,2TMS,isomer #4 | C[Si](C)(C)OC(=O)C[C@@H](C(=O)O[Si](C)(C)C)[C@@H](O)C(=O)O | 1706.7 | Semi standard non polar | 33892256 | (1R,2R)-Isocitric acid,2TMS,isomer #5 | C[Si](C)(C)OC(=O)C[C@@H](C(=O)O)[C@@H](O)C(=O)O[Si](C)(C)C | 1695.0 | Semi standard non polar | 33892256 | (1R,2R)-Isocitric acid,2TMS,isomer #6 | C[Si](C)(C)OC(=O)[C@H](O)[C@@H](CC(=O)O)C(=O)O[Si](C)(C)C | 1693.4 | Semi standard non polar | 33892256 | (1R,2R)-Isocitric acid,3TMS,isomer #1 | C[Si](C)(C)OC(=O)C[C@@H](C(=O)O)[C@@H](O[Si](C)(C)C)C(=O)O[Si](C)(C)C | 1765.6 | Semi standard non polar | 33892256 | (1R,2R)-Isocitric acid,3TMS,isomer #2 | C[Si](C)(C)OC(=O)[C@H](CC(=O)O)[C@@H](O[Si](C)(C)C)C(=O)O[Si](C)(C)C | 1773.4 | Semi standard non polar | 33892256 | (1R,2R)-Isocitric acid,3TMS,isomer #3 | C[Si](C)(C)OC(=O)C[C@@H](C(=O)O[Si](C)(C)C)[C@@H](O[Si](C)(C)C)C(=O)O | 1770.7 | Semi standard non polar | 33892256 | (1R,2R)-Isocitric acid,3TMS,isomer #4 | C[Si](C)(C)OC(=O)C[C@@H](C(=O)O[Si](C)(C)C)[C@@H](O)C(=O)O[Si](C)(C)C | 1783.6 | Semi standard non polar | 33892256 | (1R,2R)-Isocitric acid,4TMS,isomer #1 | C[Si](C)(C)OC(=O)C[C@@H](C(=O)O[Si](C)(C)C)[C@@H](O[Si](C)(C)C)C(=O)O[Si](C)(C)C | 1880.1 | Semi standard non polar | 33892256 | (1R,2R)-Isocitric acid,1TBDMS,isomer #1 | CC(C)(C)[Si](C)(C)O[C@@H](C(=O)O)[C@@H](CC(=O)O)C(=O)O | 1907.7 | Semi standard non polar | 33892256 | (1R,2R)-Isocitric acid,1TBDMS,isomer #2 | CC(C)(C)[Si](C)(C)OC(=O)C[C@@H](C(=O)O)[C@@H](O)C(=O)O | 1926.2 | Semi standard non polar | 33892256 | (1R,2R)-Isocitric acid,1TBDMS,isomer #3 | CC(C)(C)[Si](C)(C)OC(=O)[C@H](CC(=O)O)[C@@H](O)C(=O)O | 1904.2 | Semi standard non polar | 33892256 | (1R,2R)-Isocitric acid,1TBDMS,isomer #4 | CC(C)(C)[Si](C)(C)OC(=O)[C@H](O)[C@@H](CC(=O)O)C(=O)O | 1913.2 | Semi standard non polar | 33892256 | (1R,2R)-Isocitric acid,2TBDMS,isomer #1 | CC(C)(C)[Si](C)(C)OC(=O)[C@H](O[Si](C)(C)C(C)(C)C)[C@@H](CC(=O)O)C(=O)O | 2144.7 | Semi standard non polar | 33892256 | (1R,2R)-Isocitric acid,2TBDMS,isomer #2 | CC(C)(C)[Si](C)(C)OC(=O)C[C@@H](C(=O)O)[C@@H](O[Si](C)(C)C(C)(C)C)C(=O)O | 2162.7 | Semi standard non polar | 33892256 | (1R,2R)-Isocitric acid,2TBDMS,isomer #3 | CC(C)(C)[Si](C)(C)OC(=O)[C@H](CC(=O)O)[C@@H](O[Si](C)(C)C(C)(C)C)C(=O)O | 2153.8 | Semi standard non polar | 33892256 | (1R,2R)-Isocitric acid,2TBDMS,isomer #4 | CC(C)(C)[Si](C)(C)OC(=O)C[C@@H](C(=O)O[Si](C)(C)C(C)(C)C)[C@@H](O)C(=O)O | 2156.3 | Semi standard non polar | 33892256 | (1R,2R)-Isocitric acid,2TBDMS,isomer #5 | CC(C)(C)[Si](C)(C)OC(=O)C[C@@H](C(=O)O)[C@@H](O)C(=O)O[Si](C)(C)C(C)(C)C | 2161.1 | Semi standard non polar | 33892256 | (1R,2R)-Isocitric acid,2TBDMS,isomer #6 | CC(C)(C)[Si](C)(C)OC(=O)[C@H](O)[C@@H](CC(=O)O)C(=O)O[Si](C)(C)C(C)(C)C | 2152.4 | Semi standard non polar | 33892256 | (1R,2R)-Isocitric acid,3TBDMS,isomer #1 | CC(C)(C)[Si](C)(C)OC(=O)C[C@@H](C(=O)O)[C@@H](O[Si](C)(C)C(C)(C)C)C(=O)O[Si](C)(C)C(C)(C)C | 2426.0 | Semi standard non polar | 33892256 | (1R,2R)-Isocitric acid,3TBDMS,isomer #2 | CC(C)(C)[Si](C)(C)OC(=O)[C@H](CC(=O)O)[C@@H](O[Si](C)(C)C(C)(C)C)C(=O)O[Si](C)(C)C(C)(C)C | 2421.2 | Semi standard non polar | 33892256 | (1R,2R)-Isocitric acid,3TBDMS,isomer #3 | CC(C)(C)[Si](C)(C)OC(=O)C[C@@H](C(=O)O[Si](C)(C)C(C)(C)C)[C@@H](O[Si](C)(C)C(C)(C)C)C(=O)O | 2448.8 | Semi standard non polar | 33892256 | (1R,2R)-Isocitric acid,3TBDMS,isomer #4 | CC(C)(C)[Si](C)(C)OC(=O)C[C@@H](C(=O)O[Si](C)(C)C(C)(C)C)[C@@H](O)C(=O)O[Si](C)(C)C(C)(C)C | 2422.5 | Semi standard non polar | 33892256 | (1R,2R)-Isocitric acid,4TBDMS,isomer #1 | CC(C)(C)[Si](C)(C)OC(=O)C[C@@H](C(=O)O[Si](C)(C)C(C)(C)C)[C@@H](O[Si](C)(C)C(C)(C)C)C(=O)O[Si](C)(C)C(C)(C)C | 2646.9 | Semi standard non polar | 33892256 |
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| GC-MS SpectraSpectrum Type | Description | Splash Key | Deposition Date | Source | View |
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Predicted GC-MS | Predicted GC-MS Spectrum - (1R,2R)-Isocitric acid GC-MS (Non-derivatized) - 70eV, Positive | splash10-0f95-6900000000-218acce4c9847643adc3 | 2017-09-01 | Wishart Lab | View Spectrum | Predicted GC-MS | Predicted GC-MS Spectrum - (1R,2R)-Isocitric acid GC-MS (4 TMS) - 70eV, Positive | splash10-02vi-7029500000-2bb65fc897e48cc21750 | 2017-10-06 | Wishart Lab | View Spectrum | Predicted GC-MS | Predicted GC-MS Spectrum - (1R,2R)-Isocitric acid GC-MS (Non-derivatized) - 70eV, Positive | Not Available | 2021-10-12 | Wishart Lab | View Spectrum |
MS/MS SpectraSpectrum Type | Description | Splash Key | Deposition Date | Source | View |
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Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - (1R,2R)-Isocitric acid 10V, Positive-QTOF | splash10-004j-0900000000-a75a4b486df1552d6d93 | 2016-08-03 | Wishart Lab | View Spectrum | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - (1R,2R)-Isocitric acid 20V, Positive-QTOF | splash10-0gla-4900000000-d04fec4218cafd6195df | 2016-08-03 | Wishart Lab | View Spectrum | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - (1R,2R)-Isocitric acid 40V, Positive-QTOF | splash10-0fk9-8900000000-4e5fbbb415df9fbc8f31 | 2016-08-03 | Wishart Lab | View Spectrum | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - (1R,2R)-Isocitric acid 10V, Negative-QTOF | splash10-00ke-1900000000-c364bae4640e201c366d | 2016-08-04 | Wishart Lab | View Spectrum | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - (1R,2R)-Isocitric acid 20V, Negative-QTOF | splash10-0v4j-4900000000-d00f263a75673b7981c7 | 2016-08-04 | Wishart Lab | View Spectrum | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - (1R,2R)-Isocitric acid 40V, Negative-QTOF | splash10-0pk9-9200000000-156693398229f972d717 | 2016-08-04 | Wishart Lab | View Spectrum | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - (1R,2R)-Isocitric acid 10V, Positive-QTOF | splash10-056r-0900000000-4e17b6a1e2aad4076c03 | 2021-09-21 | Wishart Lab | View Spectrum | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - (1R,2R)-Isocitric acid 20V, Positive-QTOF | splash10-0ufr-1900000000-15b65374b78661650dfa | 2021-09-21 | Wishart Lab | View Spectrum | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - (1R,2R)-Isocitric acid 40V, Positive-QTOF | splash10-00di-9100000000-f126784f2170bc8d341a | 2021-09-21 | Wishart Lab | View Spectrum | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - (1R,2R)-Isocitric acid 10V, Negative-QTOF | splash10-002f-1900000000-33d42ec37993dc647513 | 2021-09-25 | Wishart Lab | View Spectrum | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - (1R,2R)-Isocitric acid 20V, Negative-QTOF | splash10-0ufr-4900000000-7b0e1ae548050695b9d6 | 2021-09-25 | Wishart Lab | View Spectrum | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - (1R,2R)-Isocitric acid 40V, Negative-QTOF | splash10-0ufu-9600000000-3667240157dc2ec377ae | 2021-09-25 | Wishart Lab | View Spectrum |
NMR SpectraSpectrum Type | Description | Deposition Date | Source | View |
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Predicted 1D NMR | 1H NMR Spectrum (1D, 100 MHz, D2O, predicted) | 2021-09-25 | Wishart Lab | View Spectrum | Predicted 1D NMR | 13C NMR Spectrum (1D, 100 MHz, D2O, predicted) | 2021-09-25 | Wishart Lab | View Spectrum | Predicted 1D NMR | 1H NMR Spectrum (1D, 1000 MHz, D2O, predicted) | 2021-09-25 | Wishart Lab | View Spectrum | Predicted 1D NMR | 13C NMR Spectrum (1D, 1000 MHz, D2O, predicted) | 2021-09-25 | Wishart Lab | View Spectrum | Predicted 1D NMR | 1H NMR Spectrum (1D, 200 MHz, D2O, predicted) | 2021-09-25 | Wishart Lab | View Spectrum | Predicted 1D NMR | 13C NMR Spectrum (1D, 200 MHz, D2O, predicted) | 2021-09-25 | Wishart Lab | View Spectrum | Predicted 1D NMR | 1H NMR Spectrum (1D, 300 MHz, D2O, predicted) | 2021-09-25 | Wishart Lab | View Spectrum | Predicted 1D NMR | 13C NMR Spectrum (1D, 300 MHz, D2O, predicted) | 2021-09-25 | Wishart Lab | View Spectrum | Predicted 1D NMR | 1H NMR Spectrum (1D, 400 MHz, D2O, predicted) | 2021-09-25 | Wishart Lab | View Spectrum | Predicted 1D NMR | 13C NMR Spectrum (1D, 400 MHz, D2O, predicted) | 2021-09-25 | Wishart Lab | View Spectrum | Predicted 1D NMR | 1H NMR Spectrum (1D, 500 MHz, D2O, predicted) | 2021-09-25 | Wishart Lab | View Spectrum | Predicted 1D NMR | 13C NMR Spectrum (1D, 500 MHz, D2O, predicted) | 2021-09-25 | Wishart Lab | View Spectrum | Predicted 1D NMR | 1H NMR Spectrum (1D, 600 MHz, D2O, predicted) | 2021-09-25 | Wishart Lab | View Spectrum | Predicted 1D NMR | 13C NMR Spectrum (1D, 600 MHz, D2O, predicted) | 2021-09-25 | Wishart Lab | View Spectrum | Predicted 1D NMR | 1H NMR Spectrum (1D, 700 MHz, D2O, predicted) | 2021-09-25 | Wishart Lab | View Spectrum | Predicted 1D NMR | 13C NMR Spectrum (1D, 700 MHz, D2O, predicted) | 2021-09-25 | Wishart Lab | View Spectrum | Predicted 1D NMR | 1H NMR Spectrum (1D, 800 MHz, D2O, predicted) | 2021-09-25 | Wishart Lab | View Spectrum | Predicted 1D NMR | 13C NMR Spectrum (1D, 800 MHz, D2O, predicted) | 2021-09-25 | Wishart Lab | View Spectrum | Predicted 1D NMR | 1H NMR Spectrum (1D, 900 MHz, D2O, predicted) | 2021-09-25 | Wishart Lab | View Spectrum | Predicted 1D NMR | 13C NMR Spectrum (1D, 900 MHz, D2O, predicted) | 2021-09-25 | Wishart Lab | View Spectrum |
IR SpectraSpectrum Type | Description | Deposition Date | Source | View |
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Predicted IR Spectrum | IR Ion Spectrum (Predicted IRIS Spectrum, Adduct: [M-H]-) | 2023-02-04 | FELIX lab | View Spectrum | Predicted IR Spectrum | IR Ion Spectrum (Predicted IRIS Spectrum, Adduct: [M+H]+) | 2023-02-04 | FELIX lab | View Spectrum | Predicted IR Spectrum | IR Ion Spectrum (Predicted IRIS Spectrum, Adduct: [M+Na]+) | 2023-02-04 | FELIX lab | View Spectrum |
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