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Record Information
Version5.0
StatusExpected but not Quantified
Creation Date2012-09-11 18:54:27 UTC
Update Date2022-03-07 02:53:59 UTC
HMDB IDHMDB0034112
Secondary Accession Numbers
  • HMDB34112
Metabolite Identification
Common Name9-O-Methylglyceofuran
Description9-O-Methylglyceofuran belongs to the class of organic compounds known as pterocarpans. These are benzo-pyrano-furano-benzene compounds, containing the 6H-[1]benzofuro[3,2-c]chromene skeleton. They are derivatives of isoflavonoids. Thus, 9-O-methylglyceofuran is considered to be a flavonoid. 9-O-Methylglyceofuran has been detected, but not quantified in, pulses and soy beans (Glycine max). This could make 9-O-methylglyceofuran a potential biomarker for the consumption of these foods. Based on a literature review very few articles have been published on 9-O-Methylglyceofuran.
Structure
Data?1563862512
SynonymsNot Available
Chemical FormulaC21H20O6
Average Molecular Weight368.3799
Monoisotopic Molecular Weight368.125988372
IUPAC Name6-(2-hydroxypropan-2-yl)-17-methoxy-7,11,20-trioxapentacyclo[11.7.0.0²,¹⁰.0⁴,⁸.0¹⁴,¹⁹]icosa-2(10),3,5,8,14(19),15,17-heptaen-13-ol
Traditional Name6-(2-hydroxypropan-2-yl)-17-methoxy-7,11,20-trioxapentacyclo[11.7.0.0²,¹⁰.0⁴,⁸.0¹⁴,¹⁹]icosa-2(10),3,5,8,14(19),15,17-heptaen-13-ol
CAS Registry Number78876-29-6
SMILES
COC1=CC2=C(C=C1)C1(O)COC3=C(C=C4C=C(OC4=C3)C(C)(C)O)C1O2
InChI Identifier
InChI=1S/C21H20O6/c1-20(2,22)18-7-11-6-13-16(9-15(11)26-18)25-10-21(23)14-5-4-12(24-3)8-17(14)27-19(13)21/h4-9,19,22-23H,10H2,1-3H3
InChI KeyXRYDGCQYNMEJEL-UHFFFAOYSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as pterocarpans. These are benzo-pyrano-furano-benzene compounds, containing the 6H-[1]benzofuro[3,2-c]chromene skeleton. They are derivatives of isoflavonoids.
KingdomOrganic compounds
Super ClassPhenylpropanoids and polyketides
ClassIsoflavonoids
Sub ClassFuranoisoflavonoids
Direct ParentPterocarpans
Alternative Parents
Substituents
  • Isoflavanol
  • Pterocarpan
  • Isoflavan
  • Chromane
  • Benzopyran
  • 1-benzopyran
  • Coumaran
  • Benzofuran
  • Anisole
  • Alkyl aryl ether
  • Benzenoid
  • Furan
  • Heteroaromatic compound
  • Tertiary alcohol
  • Ether
  • Organoheterocyclic compound
  • Oxacycle
  • Organooxygen compound
  • Aromatic alcohol
  • Alcohol
  • Hydrocarbon derivative
  • Organic oxygen compound
  • Aromatic heteropolycyclic compound
Molecular FrameworkAromatic heteropolycyclic compounds
External Descriptors
Ontology
Physiological effectNot Available
Disposition
ProcessNot Available
Role
Physical Properties
StateNot Available
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
Water Solubility0.094 g/LALOGPS
logP2.8ALOGPS
logP2.17ChemAxon
logS-3.6ALOGPS
pKa (Strongest Acidic)11.99ChemAxon
pKa (Strongest Basic)-3.4ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count5ChemAxon
Hydrogen Donor Count2ChemAxon
Polar Surface Area81.29 ŲChemAxon
Rotatable Bond Count2ChemAxon
Refractivity96.76 m³·mol⁻¹ChemAxon
Polarizability39.52 ųChemAxon
Number of Rings5ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterYesChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
DarkChem[M+H]+184.66631661259
DarkChem[M-H]-183.89131661259
DeepCCS[M+H]+190.30830932474
DeepCCS[M-H]-187.9530932474
DeepCCS[M-2H]-221.87730932474
DeepCCS[M+Na]+197.10530932474
AllCCS[M+H]+188.932859911
AllCCS[M+H-H2O]+185.832859911
AllCCS[M+NH4]+191.732859911
AllCCS[M+Na]+192.532859911
AllCCS[M-H]-193.432859911
AllCCS[M+Na-2H]-193.232859911
AllCCS[M+HCOO]-193.132859911

Predicted Retention Times

Underivatized

Chromatographic MethodRetention TimeReference
Measured using a Waters Acquity ultraperformance liquid chromatography (UPLC) ethylene-bridged hybrid (BEH) C18 column (100 mm × 2.1 mm; 1.7 μmparticle diameter). Predicted by Afia on May 17, 2022. Predicted by Afia on May 17, 2022.6.15 minutes32390414
Predicted by Siyang on May 30, 202215.1371 minutes33406817
Predicted by Siyang using ReTip algorithm on June 8, 20221.56 minutes32390414
Fem_Long = Waters ACQUITY UPLC HSS T3 C18 with Water:MeOH and 0.1% Formic Acid2280.8 seconds40023050
Fem_Lipids = Ascentis Express C18 with (60:40 water:ACN):(90:10 IPA:ACN) and 10mM NH4COOH + 0.1% Formic Acid371.5 seconds40023050
Life_Old = Waters ACQUITY UPLC BEH C18 with Water:(20:80 acetone:ACN) and 0.1% Formic Acid206.5 seconds40023050
Life_New = RP Waters ACQUITY UPLC HSS T3 C18 with Water:(30:70 MeOH:ACN) and 0.1% Formic Acid199.9 seconds40023050
RIKEN = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid173.4 seconds40023050
Eawag_XBridgeC18 = XBridge C18 3.5u 2.1x50 mm with Water:MeOH and 0.1% Formic Acid590.6 seconds40023050
BfG_NTS_RP1 =Agilent Zorbax Eclipse Plus C18 (2.1 mm x 150 mm, 3.5 um) with Water:ACN and 0.1% Formic Acid712.1 seconds40023050
HILIC_BDD_2 = Merck SeQuant ZIC-HILIC with ACN(0.1% formic acid):water(16 mM ammonium formate)88.2 seconds40023050
UniToyama_Atlantis = RP Waters Atlantis T3 (2.1 x 150 mm, 5 um) with ACN:Water and 0.1% Formic Acid1305.7 seconds40023050
BDD_C18 = Hypersil Gold 1.9µm C18 with Water:ACN and 0.1% Formic Acid566.0 seconds40023050
UFZ_Phenomenex = Kinetex Core-Shell C18 2.6 um, 3.0 x 100 mm, Phenomenex with Water:MeOH and 0.1% Formic Acid1569.3 seconds40023050
SNU_RIKEN_POS = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid462.7 seconds40023050
RPMMFDA = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid423.5 seconds40023050
MTBLS87 = Merck SeQuant ZIC-pHILIC column with ACN:Water and :ammonium carbonate296.7 seconds40023050
KI_GIAR_zic_HILIC_pH2_7 = Merck SeQuant ZIC-HILIC with ACN:Water and 0.1% FA325.4 seconds40023050
Meister zic-pHILIC pH9.3 = Merck SeQuant ZIC-pHILIC column with ACN:Water 5mM NH4Ac pH9.3 and 5mM ammonium acetate in water8.4 seconds40023050

Predicted Kovats Retention Indices

Underivatized

MetaboliteSMILESKovats RI ValueColumn TypeReference
9-O-MethylglyceofuranCOC1=CC2=C(C=C1)C1(O)COC3=C(C=C4C=C(OC4=C3)C(C)(C)O)C1O24339.1Standard polar33892256
9-O-MethylglyceofuranCOC1=CC2=C(C=C1)C1(O)COC3=C(C=C4C=C(OC4=C3)C(C)(C)O)C1O22983.4Standard non polar33892256
9-O-MethylglyceofuranCOC1=CC2=C(C=C1)C1(O)COC3=C(C=C4C=C(OC4=C3)C(C)(C)O)C1O23108.4Semi standard non polar33892256

Derivatized

Derivative Name / StructureSMILESKovats RI ValueColumn TypeReference
9-O-Methylglyceofuran,1TMS,isomer #1COC1=CC=C2C(=C1)OC1C3=CC4=C(C=C3OCC21O[Si](C)(C)C)OC(C(C)(C)O)=C43168.2Semi standard non polar33892256
9-O-Methylglyceofuran,1TMS,isomer #2COC1=CC=C2C(=C1)OC1C3=CC4=C(C=C3OCC21O)OC(C(C)(C)O[Si](C)(C)C)=C43186.4Semi standard non polar33892256
9-O-Methylglyceofuran,2TMS,isomer #1COC1=CC=C2C(=C1)OC1C3=CC4=C(C=C3OCC21O[Si](C)(C)C)OC(C(C)(C)O[Si](C)(C)C)=C43167.1Semi standard non polar33892256
9-O-Methylglyceofuran,1TBDMS,isomer #1COC1=CC=C2C(=C1)OC1C3=CC4=C(C=C3OCC21O[Si](C)(C)C(C)(C)C)OC(C(C)(C)O)=C43435.8Semi standard non polar33892256
9-O-Methylglyceofuran,1TBDMS,isomer #2COC1=CC=C2C(=C1)OC1C3=CC4=C(C=C3OCC21O)OC(C(C)(C)O[Si](C)(C)C(C)(C)C)=C43460.9Semi standard non polar33892256
9-O-Methylglyceofuran,2TBDMS,isomer #1COC1=CC=C2C(=C1)OC1C3=CC4=C(C=C3OCC21O[Si](C)(C)C(C)(C)C)OC(C(C)(C)O[Si](C)(C)C(C)(C)C)=C43659.0Semi standard non polar33892256
Spectra

GC-MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted GC-MSPredicted GC-MS Spectrum - 9-O-Methylglyceofuran GC-MS (Non-derivatized) - 70eV, Positivesplash10-0kmi-4906000000-79717007cd2757f13bd02017-09-01Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - 9-O-Methylglyceofuran GC-MS (2 TMS) - 70eV, Positivesplash10-0092-5422900000-ebd936fda17d7f31d02e2017-10-06Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - 9-O-Methylglyceofuran GC-MS (Non-derivatized) - 70eV, PositiveNot Available2021-10-12Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - 9-O-Methylglyceofuran GC-MS (Non-derivatized) - 70eV, PositiveNot Available2021-10-12Wishart LabView Spectrum

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 9-O-Methylglyceofuran 10V, Positive-QTOFsplash10-0gb9-0009000000-cf5df372ebf48f0ac6982015-04-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 9-O-Methylglyceofuran 20V, Positive-QTOFsplash10-0gb9-0009000000-bf5118559555fa4374d82015-04-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 9-O-Methylglyceofuran 40V, Positive-QTOFsplash10-0a4i-9802000000-ebf20cf015878e70908c2015-04-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 9-O-Methylglyceofuran 10V, Negative-QTOFsplash10-014i-0009000000-7224d062063faa0150ed2015-04-25Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 9-O-Methylglyceofuran 20V, Negative-QTOFsplash10-066r-0009000000-245fac7d2c88809e9dae2015-04-25Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 9-O-Methylglyceofuran 40V, Negative-QTOFsplash10-0pi0-1029000000-b292903b87cdaf531e322015-04-25Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 9-O-Methylglyceofuran 10V, Positive-QTOFsplash10-014i-0009000000-1afb1dce93015ddad3922021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 9-O-Methylglyceofuran 20V, Positive-QTOFsplash10-0gb9-0009000000-2ec8667a52c7da8236322021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 9-O-Methylglyceofuran 40V, Positive-QTOFsplash10-00dl-1942000000-cd1b3e89e7860f434ad62021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 9-O-Methylglyceofuran 10V, Negative-QTOFsplash10-014i-0009000000-53fb202c32e20191eab92021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 9-O-Methylglyceofuran 20V, Negative-QTOFsplash10-014i-1009000000-492ef18f5128351e363c2021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 9-O-Methylglyceofuran 40V, Negative-QTOFsplash10-0a4i-0289000000-8fb764e356c823d1b3bc2021-09-22Wishart LabView Spectrum
Biological Properties
Cellular Locations
  • Membrane
Biospecimen LocationsNot Available
Tissue LocationsNot Available
Pathways
Normal Concentrations
Not Available
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDFDB012379
KNApSAcK IDC00009692
Chemspider ID24843041
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound44257481
PDB IDNot Available
ChEBI IDNot Available
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General References
  1. (). Yannai, Shmuel. (2004) Dictionary of food compounds with CD-ROM: Additives, flavors, and ingredients. Boca Raton: Chapman & Hall/CRC.. .