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Record Information

Version

5.0

Status

Expected but not Quantified

Creation Date

2012-09-12 00:58:46 UTC

Update Date

2022-03-07 02:56:13 UTC

HMDB ID

HMDB0039498

Secondary Accession Numbers

HMDB39498

Metabolite Identification

Common Name

(6beta,24R)-6-Hydroxystigmast-4-en-3-one

Description

(6beta,24R)-6-Hydroxystigmast-4-en-3-one belongs to the class of organic compounds known as stigmastanes and derivatives. These are sterol lipids with a structure based on the stigmastane skeleton, which consists of a cholestane moiety bearing an ethyl group at the carbon atom C24. Based on a literature review a small amount of articles have been published on (6beta,24R)-6-Hydroxystigmast-4-en-3-one.

Structure

MOL 3D MOL SDF 3D SDF PDB 3D PDB SMILES InChI


  Mrv0541 05061311112D          

 31 34  0  0  0  0            999 V2000
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M  END

HMDB0039498
     RDKit          3D
(6beta,24R)-6-Hydroxystigmast-4-en-3-one
 79 82  0  0  0  0  0  0  0  0999 V2000
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M  END


  Mrv0541 05061311112D          

 31 34  0  0  0  0            999 V2000
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M  END
> <DATABASE_ID>
HMDB0039498

> <DATABASE_NAME>
hmdb

> <SMILES>
CCC(CCC(C)C1CCC2C3CC(O)C4=CC(=O)CCC4(C)C3CCC12C)C(C)C

> <INCHI_IDENTIFIER>
InChI=1S/C29H48O2/c1-7-20(18(2)3)9-8-19(4)23-10-11-24-22-17-27(31)26-16-21(30)12-14-29(26,6)25(22)13-15-28(23,24)5/h16,18-20,22-25,27,31H,7-15,17H2,1-6H3

> <INCHI_KEY>
IWNCBADONFSAAW-UHFFFAOYSA-N

> <FORMULA>
C29H48O2

> <MOLECULAR_WEIGHT>
428.6902

> <EXACT_MASS>
428.36543078

> <JCHEM_ACCEPTOR_COUNT>
2

> <JCHEM_AVERAGE_POLARIZABILITY>
53.76615045801955

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
1

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
14-(5-ethyl-6-methylheptan-2-yl)-8-hydroxy-2,15-dimethyltetracyclo[8.7.0.0²,⁷.0¹¹,¹⁵]heptadec-6-en-5-one

> <ALOGPS_LOGP>
6.26

> <JCHEM_LOGP>
7.180911673

> <ALOGPS_LOGS>
-6.91

> <JCHEM_MDDR_LIKE_RULE>
1

> <JCHEM_NUMBER_OF_RINGS>
4

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
19.593215893531458

> <JCHEM_PKA_STRONGEST_ACIDIC>
14.545774218733683

> <JCHEM_PKA_STRONGEST_BASIC>
-2.9974734176394477

> <JCHEM_POLAR_SURFACE_AREA>
37.3

> <JCHEM_REFRACTIVITY>
130.2301999999999

> <JCHEM_ROTATABLE_BOND_COUNT>
6

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
5.33e-05 g/l

> <JCHEM_TRADITIONAL_IUPAC>
14-(5-ethyl-6-methylheptan-2-yl)-8-hydroxy-2,15-dimethyltetracyclo[8.7.0.0²,⁷.0¹¹,¹⁵]heptadec-6-en-5-one

> <JCHEM_VEBER_RULE>
1

$$$$

HMDB0039498
     RDKit          3D
(6beta,24R)-6-Hydroxystigmast-4-en-3-one
 79 82  0  0  0  0  0  0  0  0999 V2000
    4.9637    2.1177   -1.5595 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.6529    0.8171   -1.8164 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.3259   -0.2413   -0.7378 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.8366   -0.3851   -0.8340 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1598   -1.3322    0.0477 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6334   -1.4503   -0.1729 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2176   -2.4674    0.8393 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9449   -0.1585   -0.1637 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0672    0.6287    1.1349 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2326    1.4629    1.1171 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1659    0.4245    0.6420 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5872    0.7383    0.5134 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0256    1.8805   -0.2998 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4930    2.1678    0.0633 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2304    2.5681   -1.0470 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1285    0.8907    0.5507 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.0003    1.0277    1.5270 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.6498   -0.1722    2.0439 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.8046   -0.1454    2.4855 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.7906   -1.4086    1.9847 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4083   -1.5696    0.5544 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7447   -0.3890   -0.0800 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1697   -0.4211   -1.5515 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2610   -0.5582    0.0668 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6313   -1.1290   -1.1792 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1389   -1.3834   -0.9573 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4841   -0.1044   -0.5987 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5891    0.8721   -1.7575 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.8790    0.1740    0.5771 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.3919    0.3818    0.5111 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.6940   -0.9044    1.6271 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.6533    2.2871   -0.5112 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.5903    2.9881   -1.9143 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.0135    2.2190   -2.1621 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.7400    0.9038   -1.9632 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.2371    0.3913   -2.7544 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.7987   -1.1716   -1.0851 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.5308   -0.4737   -1.9143 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.4401    0.6548   -0.5699 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.2262   -1.0380    1.1282 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.4937   -2.3878   -0.0259 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.5588   -1.8832   -1.1953 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.8464   -3.3714    0.2930 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4746   -2.1859    1.5675 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.1035   -2.8536    1.4142 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.5474    0.4937   -0.8870 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9411    1.2817    1.1796 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.0308   -0.0105    2.0173 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4416    1.8340    2.1434 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1134    2.3405    0.4772 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1066   -0.4279    1.3867 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9840    0.8994    1.5587 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0426    1.7347   -1.3979 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4770    2.7988   -0.0054 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5717    2.9739    0.8087 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7328    3.1416   -1.6668 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.2416    2.0139    1.9477 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8875   -1.2472    2.6266 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.3642   -2.2787    2.2992 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.3330   -1.8713   -0.0081 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7260   -2.4680    0.5006 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.2903   -0.5651   -1.5170 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9652    0.5009   -2.0869 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7717   -1.3334   -1.9973 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0279   -1.2952    0.8915 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8663   -0.6127   -2.1009 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0676   -2.1714   -1.2650 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1031   -2.1475   -0.1821 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7482   -1.7176   -1.9392 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4106    0.8248   -2.2922 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6652    1.9176   -1.4393 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3001    0.5566   -2.5426 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.4402    1.1160    0.9459 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.6818    1.1873   -0.1595 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.7784    0.6176    1.5241 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.9136   -0.5403    0.1774 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.4234   -1.8831    1.2207 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.0447   -0.5605    2.4830 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.6770   -1.1137    2.1746 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  4  5  1  0
  5  6  1  0
  6  7  1  0
  6  8  1  0
  8  9  1  0
  9 10  1  0
 10 11  1  0
 11 12  1  0
 12 13  1  0
 13 14  1  0
 14 15  1  0
 14 16  1  0
 16 17  2  0
 17 18  1  0
 18 19  2  0
 18 20  1  0
 20 21  1  0
 21 22  1  0
 22 23  1  0
 22 24  1  0
 24 25  1  0
 25 26  1  0
 26 27  1  0
 27 28  1  0
  3 29  1  0
 29 30  1  0
 29 31  1  0
 27  8  1  0
 27 11  1  0
 24 12  1  0
 22 16  1  0
  1 32  1  0
  1 33  1  0
  1 34  1  0
  2 35  1  0
  2 36  1  0
  3 37  1  0
  4 38  1  0
  4 39  1  0
  5 40  1  0
  5 41  1  0
  6 42  1  0
  7 43  1  0
  7 44  1  0
  7 45  1  0
  8 46  1  0
  9 47  1  0
  9 48  1  0
 10 49  1  0
 10 50  1  0
 11 51  1  0
 12 52  1  0
 13 53  1  0
 13 54  1  0
 14 55  1  0
 15 56  1  0
 17 57  1  0
 20 58  1  0
 20 59  1  0
 21 60  1  0
 21 61  1  0
 23 62  1  0
 23 63  1  0
 23 64  1  0
 24 65  1  0
 25 66  1  0
 25 67  1  0
 26 68  1  0
 26 69  1  0
 28 70  1  0
 28 71  1  0
 28 72  1  0
 29 73  1  0
 30 74  1  0
 30 75  1  0
 30 76  1  0
 31 77  1  0
 31 78  1  0
 31 79  1  0
M  END

HEADER    PROTEIN                                 06-MAY-13   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   06-MAY-13         0                                  
HETATM    1  C   UNK     0       6.357  -7.438   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       6.357  -4.770   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       8.667  -3.437   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0      13.287  -3.437   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0      11.630  -6.366   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0      10.555 -10.999   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       7.897  -7.438   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0      10.977  -4.770   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0      10.207  -6.104   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0      14.818  -6.265   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0      15.138  -7.771   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       9.915 -14.012   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0      10.876  -9.493   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0      10.235 -12.506   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0      11.196  -7.987   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0      12.524 -14.567   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0      14.629 -11.078   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       7.897  -4.770   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0      12.517  -4.770   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0       8.667  -6.104   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0      11.059 -15.043   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0      13.485 -10.048   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0      13.287  -6.104   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0      13.805  -8.541   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0      12.020 -10.524   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0      12.844 -13.060   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0      14.309 -12.584   0.000  0.00  0.00           C+0
HETATM   28  C   UNK     0      12.660  -7.511   0.000  0.00  0.00           C+0
HETATM   29  C   UNK     0      11.700 -12.030   0.000  0.00  0.00           C+0
HETATM   30  O   UNK     0      10.739 -16.549   0.000  0.00  0.00           O+0
HETATM   31  O   UNK     0      15.453 -13.615   0.000  0.00  0.00           O+0
CONECT    1    7                                                            
CONECT    2   18                                                            
CONECT    3   18                                                            
CONECT    4   19                                                            
CONECT    5   28                                                            
CONECT    6   29                                                            
CONECT    7    1   20                                                       
CONECT    8    9   19                                                       
CONECT    9    8   20                                                       
CONECT   10   11   23                                                       
CONECT   11   10   24                                                       
CONECT   12   14   21                                                       
CONECT   13   15   25                                                       
CONECT   14   12   29                                                       
CONECT   15   13   28                                                       
CONECT   16   21   26                                                       
CONECT   17   22   27                                                       
CONECT   18    2    3   20                                                  
CONECT   19    4    8   23                                                  
CONECT   20    7    9   18                                                  
CONECT   21   12   16   30                                                  
CONECT   22   17   24   25                                                  
CONECT   23   10   19   28                                                  
CONECT   24   11   22   28                                                  
CONECT   25   13   22   29                                                  
CONECT   26   16   27   29                                                  
CONECT   27   17   26   31                                                  
CONECT   28    5   15   23   24                                             
CONECT   29    6   14   25   26                                             
CONECT   30   21                                                            
CONECT   31   27                                                            
MASTER        0    0    0    0    0    0    0    0   31    0   68    0
END

COMPND    HMDB0039498
HETATM    1  C1  UNL     1       4.964   2.118  -1.559  1.00  0.00           C  
HETATM    2  C2  UNL     1       5.653   0.817  -1.816  1.00  0.00           C  
HETATM    3  C3  UNL     1       5.326  -0.241  -0.738  1.00  0.00           C  
HETATM    4  C4  UNL     1       3.837  -0.385  -0.834  1.00  0.00           C  
HETATM    5  C5  UNL     1       3.160  -1.332   0.048  1.00  0.00           C  
HETATM    6  C6  UNL     1       1.633  -1.450  -0.173  1.00  0.00           C  
HETATM    7  C7  UNL     1       1.218  -2.467   0.839  1.00  0.00           C  
HETATM    8  C8  UNL     1       0.945  -0.158  -0.164  1.00  0.00           C  
HETATM    9  C9  UNL     1       1.067   0.629   1.135  1.00  0.00           C  
HETATM   10  C10 UNL     1      -0.233   1.463   1.117  1.00  0.00           C  
HETATM   11  C11 UNL     1      -1.166   0.424   0.642  1.00  0.00           C  
HETATM   12  C12 UNL     1      -2.587   0.738   0.513  1.00  0.00           C  
HETATM   13  C13 UNL     1      -3.026   1.880  -0.300  1.00  0.00           C  
HETATM   14  C14 UNL     1      -4.493   2.168   0.063  1.00  0.00           C  
HETATM   15  O1  UNL     1      -5.230   2.568  -1.047  1.00  0.00           O  
HETATM   16  C15 UNL     1      -5.128   0.891   0.551  1.00  0.00           C  
HETATM   17  C16 UNL     1      -6.000   1.028   1.527  1.00  0.00           C  
HETATM   18  C17 UNL     1      -6.650  -0.172   2.044  1.00  0.00           C  
HETATM   19  O2  UNL     1      -7.805  -0.145   2.486  1.00  0.00           O  
HETATM   20  C18 UNL     1      -5.791  -1.409   1.985  1.00  0.00           C  
HETATM   21  C19 UNL     1      -5.408  -1.570   0.554  1.00  0.00           C  
HETATM   22  C20 UNL     1      -4.745  -0.389  -0.080  1.00  0.00           C  
HETATM   23  C21 UNL     1      -5.170  -0.421  -1.551  1.00  0.00           C  
HETATM   24  C22 UNL     1      -3.261  -0.558   0.067  1.00  0.00           C  
HETATM   25  C23 UNL     1      -2.631  -1.129  -1.179  1.00  0.00           C  
HETATM   26  C24 UNL     1      -1.139  -1.383  -0.957  1.00  0.00           C  
HETATM   27  C25 UNL     1      -0.484  -0.104  -0.599  1.00  0.00           C  
HETATM   28  C26 UNL     1      -0.589   0.872  -1.757  1.00  0.00           C  
HETATM   29  C27 UNL     1       5.879   0.174   0.577  1.00  0.00           C  
HETATM   30  C28 UNL     1       7.392   0.382   0.511  1.00  0.00           C  
HETATM   31  C29 UNL     1       5.694  -0.904   1.627  1.00  0.00           C  
HETATM   32  H1  UNL     1       4.653   2.287  -0.511  1.00  0.00           H  
HETATM   33  H2  UNL     1       5.590   2.988  -1.914  1.00  0.00           H  
HETATM   34  H3  UNL     1       4.014   2.219  -2.162  1.00  0.00           H  
HETATM   35  H4  UNL     1       6.740   0.904  -1.963  1.00  0.00           H  
HETATM   36  H5  UNL     1       5.237   0.391  -2.754  1.00  0.00           H  
HETATM   37  H6  UNL     1       5.799  -1.172  -1.085  1.00  0.00           H  
HETATM   38  H7  UNL     1       3.531  -0.474  -1.914  1.00  0.00           H  
HETATM   39  H8  UNL     1       3.440   0.655  -0.570  1.00  0.00           H  
HETATM   40  H9  UNL     1       3.226  -1.038   1.128  1.00  0.00           H  
HETATM   41  H10 UNL     1       3.494  -2.388  -0.026  1.00  0.00           H  
HETATM   42  H11 UNL     1       1.559  -1.883  -1.195  1.00  0.00           H  
HETATM   43  H12 UNL     1       0.846  -3.371   0.293  1.00  0.00           H  
HETATM   44  H13 UNL     1       0.475  -2.186   1.568  1.00  0.00           H  
HETATM   45  H14 UNL     1       2.103  -2.854   1.414  1.00  0.00           H  
HETATM   46  H15 UNL     1       1.547   0.494  -0.887  1.00  0.00           H  
HETATM   47  H16 UNL     1       1.941   1.282   1.180  1.00  0.00           H  
HETATM   48  H17 UNL     1       1.031  -0.010   2.017  1.00  0.00           H  
HETATM   49  H18 UNL     1      -0.442   1.834   2.143  1.00  0.00           H  
HETATM   50  H19 UNL     1      -0.113   2.341   0.477  1.00  0.00           H  
HETATM   51  H20 UNL     1      -1.107  -0.428   1.387  1.00  0.00           H  
HETATM   52  H21 UNL     1      -2.984   0.899   1.559  1.00  0.00           H  
HETATM   53  H22 UNL     1      -3.043   1.735  -1.398  1.00  0.00           H  
HETATM   54  H23 UNL     1      -2.477   2.799  -0.005  1.00  0.00           H  
HETATM   55  H24 UNL     1      -4.572   2.974   0.809  1.00  0.00           H  
HETATM   56  H25 UNL     1      -4.733   3.142  -1.667  1.00  0.00           H  
HETATM   57  H26 UNL     1      -6.242   2.014   1.948  1.00  0.00           H  
HETATM   58  H27 UNL     1      -4.887  -1.247   2.627  1.00  0.00           H  
HETATM   59  H28 UNL     1      -6.364  -2.279   2.299  1.00  0.00           H  
HETATM   60  H29 UNL     1      -6.333  -1.871  -0.008  1.00  0.00           H  
HETATM   61  H30 UNL     1      -4.726  -2.468   0.501  1.00  0.00           H  
HETATM   62  H31 UNL     1      -6.290  -0.565  -1.517  1.00  0.00           H  
HETATM   63  H32 UNL     1      -4.965   0.501  -2.087  1.00  0.00           H  
HETATM   64  H33 UNL     1      -4.772  -1.333  -1.997  1.00  0.00           H  
HETATM   65  H34 UNL     1      -3.028  -1.295   0.891  1.00  0.00           H  
HETATM   66  H35 UNL     1      -2.866  -0.613  -2.101  1.00  0.00           H  
HETATM   67  H36 UNL     1      -3.068  -2.171  -1.265  1.00  0.00           H  
HETATM   68  H37 UNL     1      -1.103  -2.147  -0.182  1.00  0.00           H  
HETATM   69  H38 UNL     1      -0.748  -1.718  -1.939  1.00  0.00           H  
HETATM   70  H39 UNL     1       0.411   0.825  -2.292  1.00  0.00           H  
HETATM   71  H40 UNL     1      -0.665   1.918  -1.439  1.00  0.00           H  
HETATM   72  H41 UNL     1      -1.300   0.557  -2.543  1.00  0.00           H  
HETATM   73  H42 UNL     1       5.440   1.116   0.946  1.00  0.00           H  
HETATM   74  H43 UNL     1       7.682   1.187  -0.160  1.00  0.00           H  
HETATM   75  H44 UNL     1       7.778   0.618   1.524  1.00  0.00           H  
HETATM   76  H45 UNL     1       7.914  -0.540   0.177  1.00  0.00           H  
HETATM   77  H46 UNL     1       5.423  -1.883   1.221  1.00  0.00           H  
HETATM   78  H47 UNL     1       5.045  -0.560   2.483  1.00  0.00           H  
HETATM   79  H48 UNL     1       6.677  -1.114   2.175  1.00  0.00           H  
CONECT    1    2   32   33   34
CONECT    2    3   35   36
CONECT    3    4   29   37
CONECT    4    5   38   39
CONECT    5    6   40   41
CONECT    6    7    8   42
CONECT    7   43   44   45
CONECT    8    9   27   46
CONECT    9   10   47   48
CONECT   10   11   49   50
CONECT   11   12   27   51
CONECT   12   13   24   52
CONECT   13   14   53   54
CONECT   14   15   16   55
CONECT   15   56
CONECT   16   17   17   22
CONECT   17   18   57
CONECT   18   19   19   20
CONECT   20   21   58   59
CONECT   21   22   60   61
CONECT   22   23   24
CONECT   23   62   63   64
CONECT   24   25   65
CONECT   25   26   66   67
CONECT   26   27   68   69
CONECT   27   28
CONECT   28   70   71   72
CONECT   29   30   31   73
CONECT   30   74   75   76
CONECT   31   77   78   79
END

HMDB0039498
     RDKit          3D
(6beta,24R)-6-Hydroxystigmast-4-en-3-one
 79 82  0  0  0  0  0  0  0  0999 V2000
    4.9637    2.1177   -1.5595 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.6529    0.8171   -1.8164 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.3259   -0.2413   -0.7378 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.8366   -0.3851   -0.8340 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1598   -1.3322    0.0477 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6334   -1.4503   -0.1729 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2176   -2.4674    0.8393 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9449   -0.1585   -0.1637 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0672    0.6287    1.1349 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2326    1.4629    1.1171 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1659    0.4245    0.6420 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5872    0.7383    0.5134 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0256    1.8805   -0.2998 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4930    2.1678    0.0633 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2304    2.5681   -1.0470 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1285    0.8907    0.5507 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.0003    1.0277    1.5270 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.6498   -0.1722    2.0439 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.8046   -0.1454    2.4855 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.7906   -1.4086    1.9847 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4083   -1.5696    0.5544 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7447   -0.3890   -0.0800 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1697   -0.4211   -1.5515 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2610   -0.5582    0.0668 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6313   -1.1290   -1.1792 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1389   -1.3834   -0.9573 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4841   -0.1044   -0.5987 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5891    0.8721   -1.7575 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.8790    0.1740    0.5771 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.3919    0.3818    0.5111 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.6940   -0.9044    1.6271 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.6533    2.2871   -0.5112 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.5903    2.9881   -1.9143 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.0135    2.2190   -2.1621 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.7400    0.9038   -1.9632 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.2371    0.3913   -2.7544 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.7987   -1.1716   -1.0851 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.5308   -0.4737   -1.9143 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.4401    0.6548   -0.5699 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.2262   -1.0380    1.1282 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.4937   -2.3878   -0.0259 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.5588   -1.8832   -1.1953 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.8464   -3.3714    0.2930 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4746   -2.1859    1.5675 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.1035   -2.8536    1.4142 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.5474    0.4937   -0.8870 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9411    1.2817    1.1796 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.0308   -0.0105    2.0173 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4416    1.8340    2.1434 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1134    2.3405    0.4772 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1066   -0.4279    1.3867 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9840    0.8994    1.5587 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0426    1.7347   -1.3979 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4770    2.7988   -0.0054 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5717    2.9739    0.8087 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7328    3.1416   -1.6668 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.2416    2.0139    1.9477 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8875   -1.2472    2.6266 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.3642   -2.2787    2.2992 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.3330   -1.8713   -0.0081 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7260   -2.4680    0.5006 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.2903   -0.5651   -1.5170 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9652    0.5009   -2.0869 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7717   -1.3334   -1.9973 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0279   -1.2952    0.8915 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8663   -0.6127   -2.1009 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0676   -2.1714   -1.2650 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1031   -2.1475   -0.1821 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7482   -1.7176   -1.9392 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4106    0.8248   -2.2922 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6652    1.9176   -1.4393 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3001    0.5566   -2.5426 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.4402    1.1160    0.9459 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.6818    1.1873   -0.1595 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.7784    0.6176    1.5241 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.9136   -0.5403    0.1774 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.4234   -1.8831    1.2207 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.0447   -0.5605    2.4830 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.6770   -1.1137    2.1746 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  4  5  1  0
  5  6  1  0
  6  7  1  0
  6  8  1  0
  8  9  1  0
  9 10  1  0
 10 11  1  0
 11 12  1  0
 12 13  1  0
 13 14  1  0
 14 15  1  0
 14 16  1  0
 16 17  2  0
 17 18  1  0
 18 19  2  0
 18 20  1  0
 20 21  1  0
 21 22  1  0
 22 23  1  0
 22 24  1  0
 24 25  1  0
 25 26  1  0
 26 27  1  0
 27 28  1  0
  3 29  1  0
 29 30  1  0
 29 31  1  0
 27  8  1  0
 27 11  1  0
 24 12  1  0
 22 16  1  0
  1 32  1  0
  1 33  1  0
  1 34  1  0
  2 35  1  0
  2 36  1  0
  3 37  1  0
  4 38  1  0
  4 39  1  0
  5 40  1  0
  5 41  1  0
  6 42  1  0
  7 43  1  0
  7 44  1  0
  7 45  1  0
  8 46  1  0
  9 47  1  0
  9 48  1  0
 10 49  1  0
 10 50  1  0
 11 51  1  0
 12 52  1  0
 13 53  1  0
 13 54  1  0
 14 55  1  0
 15 56  1  0
 17 57  1  0
 20 58  1  0
 20 59  1  0
 21 60  1  0
 21 61  1  0
 23 62  1  0
 23 63  1  0
 23 64  1  0
 24 65  1  0
 25 66  1  0
 25 67  1  0
 26 68  1  0
 26 69  1  0
 28 70  1  0
 28 71  1  0
 28 72  1  0
 29 73  1  0
 30 74  1  0
 30 75  1  0
 30 76  1  0
 31 77  1  0
 31 78  1  0
 31 79  1  0
M  END

View in JSmol View Stereo Labels

Synonyms

Value	Source
(6b,24R)-6-Hydroxystigmast-4-en-3-one	Generator
(6Β,24R)-6-hydroxystigmast-4-en-3-one	Generator
Stigmast-4-en-6beta-ol-3-one	HMDB

Chemical Formula

C₂₉H₄₈O₂

Average Molecular Weight

428.6902

Monoisotopic Molecular Weight

428.36543078

IUPAC Name

14-(5-ethyl-6-methylheptan-2-yl)-8-hydroxy-2,15-dimethyltetracyclo[8.7.0.0²,⁷.0¹¹,¹⁵]heptadec-6-en-5-one

Traditional Name

14-(5-ethyl-6-methylheptan-2-yl)-8-hydroxy-2,15-dimethyltetracyclo[8.7.0.0²,⁷.0¹¹,¹⁵]heptadec-6-en-5-one

CAS Registry Number

36450-02-9

SMILES

CCC(CCC(C)C1CCC2C3CC(O)C4=CC(=O)CCC4(C)C3CCC12C)C(C)C

InChI Identifier

InChI=1S/C29H48O2/c1-7-20(18(2)3)9-8-19(4)23-10-11-24-22-17-27(31)26-16-21(30)12-14-29(26,6)25(22)13-15-28(23,24)5/h16,18-20,22-25,27,31H,7-15,17H2,1-6H3

InChI Key

IWNCBADONFSAAW-UHFFFAOYSA-N

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as stigmastanes and derivatives. These are sterol lipids with a structure based on the stigmastane skeleton, which consists of a cholestane moiety bearing an ethyl group at the carbon atom C24.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Steroids and steroid derivatives

Sub Class

Stigmastanes and derivatives

Direct Parent

Stigmastanes and derivatives

Alternative Parents

Substituents

Triterpenoid
Stigmastane-skeleton
3-oxo-delta-4-steroid
3-oxosteroid
6-hydroxysteroid
Oxosteroid
Hydroxysteroid
Delta-4-steroid
Cyclohexenone
Cyclic alcohol
Cyclic ketone
Secondary alcohol
Ketone
Organic oxygen compound
Hydrocarbon derivative
Carbonyl group
Organic oxide
Organooxygen compound
Alcohol
Aliphatic homopolycyclic compound

Molecular Framework

Aliphatic homopolycyclic compounds

External Descriptors

Not Available

Ontology

Physiological effect

Not Available

Disposition

Biological location

Cellular substructure

Excreta

Biofluid or Excreta

Urine (HMDB: HMDB0039498)

Tissue

Nervous tissue

Hepatic tissue (HMDB: HMDB0039498)

Route of exposure

Enteral

Ingestion (HMDB: HMDB0039498)

Source

Endogenous

Endogenous (HMDB: HMDB0039498)

Plant

Fabaceae (HMDB: HMDB0039498)

Animal

Animal (HMDB: HMDB0039498)

Exogenous

Food

Food (HMDB: HMDB0039498)

Pulse

Bean

Yellow wax bean (FooDB: FOOD00882)
Green bean (FooDB: FOOD00883)

Pulses (FooDB: FOOD00867)

Exogenous (HMDB: HMDB0039498)

Process

Naturally occurring process

Biological process

Chemical reaction

Lipid Peroxidation (HMDB: HMDB0039498)

Biochemical pathway

Metabolic pathway

Fatty Acid Metabolism (HMDB: HMDB0039498)

Lipid metabolism pathway (HMDB: HMDB0039498)

Cellular process

Cell signaling (HMDB: HMDB0039498)

Biochemical process

Lipid transport (HMDB: HMDB0039498)

Role

Biological role

Membrane stabilizer (HMDB: HMDB0039498)

Molecular messenger

Signaling molecule (HMDB: HMDB0039498)

Industrial application

Manufacturing industry

Material processing agent

Fluid processing agent

Surfactant

Surfactant (HMDB: HMDB0039498)

Physical Properties

State

Solid

Experimental Molecular Properties

Property	Value	Reference
Melting Point	213 - 215 °C	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Experimental Chromatographic Properties

Not Available

Predicted Molecular Properties

Property	Value	Source
Water Solubility	5.3e-05 g/L	ALOGPS
logP	6.26	ALOGPS
logP	7.18	ChemAxon
logS	-6.9	ALOGPS
pKa (Strongest Acidic)	14.55	ChemAxon
pKa (Strongest Basic)	-3	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	2	ChemAxon
Hydrogen Donor Count	1	ChemAxon
Polar Surface Area	37.3 Å²	ChemAxon
Rotatable Bond Count	6	ChemAxon
Refractivity	130.23 m³·mol⁻¹	ChemAxon
Polarizability	53.77 Å³	ChemAxon
Number of Rings	4	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	Yes	ChemAxon
MDDR-like Rule	Yes	ChemAxon

Predicted Chromatographic Properties

Predicted Collision Cross Sections

Predictor	Adduct Type	CCS Value (Å²)	Reference
DarkChem	[M+H]+	203.179	31661259
DarkChem	[M-H]-	200.118	31661259
DeepCCS	[M-2H]-	241.734	30932474
DeepCCS	[M+Na]+	216.962	30932474
AllCCS	[M+H]+	210.8	32859911
AllCCS	[M+H-H2O]+	208.9	32859911
AllCCS	[M+NH4]+	212.6	32859911
AllCCS	[M+Na]+	213.1	32859911
AllCCS	[M-H]-	207.5	32859911
AllCCS	[M+Na-2H]-	209.7	32859911
AllCCS	[M+HCOO]-	212.3	32859911

Predicted Retention Times

Underivatized

Chromatographic Method	Retention Time	Reference
Measured using a Waters Acquity ultraperformance liquid chromatography (UPLC) ethylene-bridged hybrid (BEH) C18 column (100 mm × 2.1 mm; 1.7 μmparticle diameter). Predicted by Afia on May 17, 2022.	9.25 minutes	32390414
Predicted by Siyang on May 30, 2022	26.0607 minutes	33406817
Predicted by Siyang using ReTip algorithm on June 8, 2022	1.68 minutes	32390414
AjsUoB = Accucore 150 Amide HILIC with 10mM Ammonium Formate, 0.1% Formic Acid	40.2 seconds	40023050
Fem_Long = Waters ACQUITY UPLC HSS T3 C18 with Water:MeOH and 0.1% Formic Acid	3755.9 seconds	40023050
Fem_Lipids = Ascentis Express C18 with (60:40 water:ACN):(90:10 IPA:ACN) and 10mM NH4COOH + 0.1% Formic Acid	749.5 seconds	40023050
Life_Old = Waters ACQUITY UPLC BEH C18 with Water:(20:80 acetone:ACN) and 0.1% Formic Acid	312.3 seconds	40023050
Life_New = RP Waters ACQUITY UPLC HSS T3 C18 with Water:(30:70 MeOH:ACN) and 0.1% Formic Acid	282.2 seconds	40023050
RIKEN = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid	741.9 seconds	40023050
Eawag_XBridgeC18 = XBridge C18 3.5u 2.1x50 mm with Water:MeOH and 0.1% Formic Acid	1217.9 seconds	40023050
BfG_NTS_RP1 =Agilent Zorbax Eclipse Plus C18 (2.1 mm x 150 mm, 3.5 um) with Water:ACN and 0.1% Formic Acid	1148.2 seconds	40023050
HILIC_BDD_2 = Merck SeQuant ZIC-HILIC with ACN(0.1% formic acid):water(16 mM ammonium formate)	101.0 seconds	40023050
UniToyama_Atlantis = RP Waters Atlantis T3 (2.1 x 150 mm, 5 um) with ACN:Water and 0.1% Formic Acid	2019.7 seconds	40023050
BDD_C18 = Hypersil Gold 1.9µm C18 with Water:ACN and 0.1% Formic Acid	754.4 seconds	40023050
UFZ_Phenomenex = Kinetex Core-Shell C18 2.6 um, 3.0 x 100 mm, Phenomenex with Water:MeOH and 0.1% Formic Acid	2251.3 seconds	40023050
SNU_RIKEN_POS = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid	662.6 seconds	40023050
RPMMFDA = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid	628.5 seconds	40023050
MTBLS87 = Merck SeQuant ZIC-pHILIC column with ACN:Water and :ammonium carbonate	266.6 seconds	40023050
KI_GIAR_zic_HILIC_pH2_7 = Merck SeQuant ZIC-HILIC with ACN:Water and 0.1% FA	593.9 seconds	40023050
Meister zic-pHILIC pH9.3 = Merck SeQuant ZIC-pHILIC column with ACN:Water 5mM NH4Ac pH9.3 and 5mM ammonium acetate in water	8.8 seconds	40023050

Predicted Kovats Retention Indices

Underivatized

Metabolite	SMILES	Kovats RI Value	Column Type	Reference
(6beta,24R)-6-Hydroxystigmast-4-en-3-one	CCC(CCC(C)C1CCC2C3CC(O)C4=CC(=O)CCC4(C)C3CCC12C)C(C)C	3837.2	Standard polar	33892256
(6beta,24R)-6-Hydroxystigmast-4-en-3-one	CCC(CCC(C)C1CCC2C3CC(O)C4=CC(=O)CCC4(C)C3CCC12C)C(C)C	3422.4	Standard non polar	33892256
(6beta,24R)-6-Hydroxystigmast-4-en-3-one	CCC(CCC(C)C1CCC2C3CC(O)C4=CC(=O)CCC4(C)C3CCC12C)C(C)C	3583.0	Semi standard non polar	33892256

Derivatized

Derivative Name / Structure	SMILES	Kovats RI Value	Column Type	Reference
(6beta,24R)-6-Hydroxystigmast-4-en-3-one,1TMS,isomer #1	CCC(CCC(C)C1CCC2C3CC(O[Si](C)(C)C)C4=CC(=O)CCC4(C)C3CCC12C)C(C)C	3610.7	Semi standard non polar	33892256
(6beta,24R)-6-Hydroxystigmast-4-en-3-one,1TMS,isomer #2	CCC(CCC(C)C1CCC2C3CC(O)C4=CC(O[Si](C)(C)C)=CCC4(C)C3CCC12C)C(C)C	3530.1	Semi standard non polar	33892256
(6beta,24R)-6-Hydroxystigmast-4-en-3-one,2TMS,isomer #1	CCC(CCC(C)C1CCC2C3CC(O[Si](C)(C)C)C4=CC(O[Si](C)(C)C)=CCC4(C)C3CCC12C)C(C)C	3501.2	Semi standard non polar	33892256
(6beta,24R)-6-Hydroxystigmast-4-en-3-one,2TMS,isomer #1	CCC(CCC(C)C1CCC2C3CC(O[Si](C)(C)C)C4=CC(O[Si](C)(C)C)=CCC4(C)C3CCC12C)C(C)C	3484.3	Standard non polar	33892256
(6beta,24R)-6-Hydroxystigmast-4-en-3-one,1TBDMS,isomer #1	CCC(CCC(C)C1CCC2C3CC(O[Si](C)(C)C(C)(C)C)C4=CC(=O)CCC4(C)C3CCC12C)C(C)C	3824.1	Semi standard non polar	33892256
(6beta,24R)-6-Hydroxystigmast-4-en-3-one,1TBDMS,isomer #2	CCC(CCC(C)C1CCC2C3CC(O)C4=CC(O[Si](C)(C)C(C)(C)C)=CCC4(C)C3CCC12C)C(C)C	3737.1	Semi standard non polar	33892256
(6beta,24R)-6-Hydroxystigmast-4-en-3-one,2TBDMS,isomer #1	CCC(CCC(C)C1CCC2C3CC(O[Si](C)(C)C(C)(C)C)C4=CC(O[Si](C)(C)C(C)(C)C)=CCC4(C)C3CCC12C)C(C)C	3903.4	Semi standard non polar	33892256
(6beta,24R)-6-Hydroxystigmast-4-en-3-one,2TBDMS,isomer #1	CCC(CCC(C)C1CCC2C3CC(O[Si](C)(C)C(C)(C)C)C4=CC(O[Si](C)(C)C(C)(C)C)=CCC4(C)C3CCC12C)C(C)C	3945.7	Standard non polar	33892256

Spectra

GC-MS Spectra

Spectrum Type	Description	Splash Key	Deposition Date	Source	View
Predicted GC-MS	Predicted GC-MS Spectrum - (6beta,24R)-6-Hydroxystigmast-4-en-3-one GC-MS (Non-derivatized) - 70eV, Positive	splash10-01pd-5748900000-dfe6bd72064f92e8928a	2017-09-01	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - (6beta,24R)-6-Hydroxystigmast-4-en-3-one GC-MS (1 TMS) - 70eV, Positive	splash10-0079-6121900000-74ceb4a3fc36cbba6d01	2017-10-06	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - (6beta,24R)-6-Hydroxystigmast-4-en-3-one GC-MS (Non-derivatized) - 70eV, Positive	Not Available	2021-10-12	Wishart Lab	View Spectrum

MS/MS Spectra

Spectrum Type	Description	Splash Key	Deposition Date	Source	View
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - (6beta,24R)-6-Hydroxystigmast-4-en-3-one 10V, Positive-QTOF	splash10-03fr-0002900000-6ae8d485b5b4fc4fbb28	2015-04-24	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - (6beta,24R)-6-Hydroxystigmast-4-en-3-one 20V, Positive-QTOF	splash10-03fs-6219400000-7e60c9ab4a47a63810b7	2015-04-24	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - (6beta,24R)-6-Hydroxystigmast-4-en-3-one 40V, Positive-QTOF	splash10-01ot-9135000000-43a75055ff2552e3a622	2015-04-24	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - (6beta,24R)-6-Hydroxystigmast-4-en-3-one 10V, Positive-QTOF	splash10-03fr-0002900000-6ae8d485b5b4fc4fbb28	2015-04-24	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - (6beta,24R)-6-Hydroxystigmast-4-en-3-one 20V, Positive-QTOF	splash10-03fs-6219400000-7e60c9ab4a47a63810b7	2015-04-24	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - (6beta,24R)-6-Hydroxystigmast-4-en-3-one 40V, Positive-QTOF	splash10-01ot-9135000000-43a75055ff2552e3a622	2015-04-24	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - (6beta,24R)-6-Hydroxystigmast-4-en-3-one 10V, Negative-QTOF	splash10-004i-0000900000-18abf3a5b702c8725ad1	2015-04-25	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - (6beta,24R)-6-Hydroxystigmast-4-en-3-one 20V, Negative-QTOF	splash10-004i-0000900000-d001b2938fe708840ac1	2015-04-25	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - (6beta,24R)-6-Hydroxystigmast-4-en-3-one 40V, Negative-QTOF	splash10-01ot-4019600000-033c716014501e6cd967	2015-04-25	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - (6beta,24R)-6-Hydroxystigmast-4-en-3-one 10V, Negative-QTOF	splash10-004i-0000900000-18abf3a5b702c8725ad1	2015-04-25	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - (6beta,24R)-6-Hydroxystigmast-4-en-3-one 20V, Negative-QTOF	splash10-004i-0000900000-d001b2938fe708840ac1	2015-04-25	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - (6beta,24R)-6-Hydroxystigmast-4-en-3-one 40V, Negative-QTOF	splash10-01ot-4019600000-033c716014501e6cd967	2015-04-25	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - (6beta,24R)-6-Hydroxystigmast-4-en-3-one 10V, Negative-QTOF	splash10-004i-0000900000-08c8d00e3f1ae63a05c9	2021-09-22	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - (6beta,24R)-6-Hydroxystigmast-4-en-3-one 20V, Negative-QTOF	splash10-004i-0000900000-6016e66ee8585f47ff10	2021-09-22	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - (6beta,24R)-6-Hydroxystigmast-4-en-3-one 40V, Negative-QTOF	splash10-004i-0004900000-86d21e2fe878ad8b38fd	2021-09-22	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - (6beta,24R)-6-Hydroxystigmast-4-en-3-one 10V, Positive-QTOF	splash10-004i-0011900000-56cd4d6d84550caad0fc	2021-09-22	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - (6beta,24R)-6-Hydroxystigmast-4-en-3-one 20V, Positive-QTOF	splash10-004i-9225300000-96d20bc4b641bb29b24f	2021-09-22	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - (6beta,24R)-6-Hydroxystigmast-4-en-3-one 40V, Positive-QTOF	splash10-0a4l-9420000000-9f35ebbc231e87e4638b	2021-09-22	Wishart Lab	View Spectrum

Biological Properties

Cellular Locations

Extracellular
Membrane

Biospecimen Locations

Not Available

Tissue Locations

Not Available

Pathways

Not Available

Name	SMPDB/PathBank	KEGG

Normal Concentrations

Not Available

Abnormal Concentrations

Not Available

Associated Disorders and Diseases

Disease References

None

Associated OMIM IDs

None

External Links

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FooDB ID

FDB019105

KNApSAcK ID

C00029573

Chemspider ID

21433172

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

14769504

PDB ID

Not Available

ChEBI ID

192029

Food Biomarker Ontology

Not Available

VMH ID

Not Available

MarkerDB ID

Not Available

Good Scents ID

Not Available

References

Synthesis Reference

Not Available

Material Safety Data Sheet (MSDS)

Not Available

General References

Simons K, Toomre D: Lipid rafts and signal transduction. Nat Rev Mol Cell Biol. 2000 Oct;1(1):31-9. [PubMed:11413487 ]
Watson AD: Thematic review series: systems biology approaches to metabolic and cardiovascular disorders. Lipidomics: a global approach to lipid analysis in biological systems. J Lipid Res. 2006 Oct;47(10):2101-11. Epub 2006 Aug 10. [PubMed:16902246 ]
Sethi JK, Vidal-Puig AJ: Thematic review series: adipocyte biology. Adipose tissue function and plasticity orchestrate nutritional adaptation. J Lipid Res. 2007 Jun;48(6):1253-62. Epub 2007 Mar 20. [PubMed:17374880 ]
Lingwood D, Simons K: Lipid rafts as a membrane-organizing principle. Science. 2010 Jan 1;327(5961):46-50. doi: 10.1126/science.1174621. [PubMed:20044567 ]
(). Yannai, Shmuel. (2004) Dictionary of food compounds with CD-ROM: Additives, flavors, and ingredients. Boca Raton: Chapman & Hall/CRC.. .
Gunstone, Frank D., John L. Harwood, and Albert J. Dijkstra (2007). The lipid handbook with CD-ROM. CRC Press.

Showing metabocard for (6beta,24R)-6-Hydroxystigmast-4-en-3-one (HMDB0039498)

MOL for HMDB0039498 ((6beta,24R)-6-Hydroxystigmast-4-en-3-one)

3D MOL for HMDB0039498 ((6beta,24R)-6-Hydroxystigmast-4-en-3-one)

3D SDF for HMDB0039498 ((6beta,24R)-6-Hydroxystigmast-4-en-3-one)

3D-SDF for HMDB0039498 ((6beta,24R)-6-Hydroxystigmast-4-en-3-one)

PDB for HMDB0039498 ((6beta,24R)-6-Hydroxystigmast-4-en-3-one)

3D PDB for HMDB0039498 ((6beta,24R)-6-Hydroxystigmast-4-en-3-one)

SMILES for HMDB0039498 ((6beta,24R)-6-Hydroxystigmast-4-en-3-one)

INCHI for HMDB0039498 ((6beta,24R)-6-Hydroxystigmast-4-en-3-one)

Structure for HMDB0039498 ((6beta,24R)-6-Hydroxystigmast-4-en-3-one)

3D Structure for HMDB0039498 ((6beta,24R)-6-Hydroxystigmast-4-en-3-one)

Predicted Collision Cross Sections

Predicted Retention Times

Underivatized

Predicted Kovats Retention Indices

Underivatized

Derivatized

GC-MS Spectra

MS/MS Spectra