Record Information |
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Version | 5.0 |
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Status | Expected but not Quantified |
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Creation Date | 2012-09-12 00:58:50 UTC |
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Update Date | 2022-03-07 02:56:13 UTC |
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HMDB ID | HMDB0039499 |
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Secondary Accession Numbers | |
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Metabolite Identification |
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Common Name | 1,4-Dideoxy-1,4-imino-D-ribitol |
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Description | 1,4-Dideoxy-1,4-imino-D-ribitol, also known as 2-hydroxymethyl-pyrrolidine-3,4-diol or DRIB, belongs to the class of organic compounds known as pyrrolidines. Pyrrolidines are compounds containing a pyrrolidine ring, which is a five-membered saturated aliphatic heterocycle with one nitrogen atom and four carbon atoms. 1,4-Dideoxy-1,4-imino-D-ribitol has been detected, but not quantified in, fruits and wax apples (Eugenia javanica). This could make 1,4-dideoxy-1,4-imino-D-ribitol a potential biomarker for the consumption of these foods. Based on a literature review very few articles have been published on 1,4-Dideoxy-1,4-imino-D-ribitol. |
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Structure | InChI=1S/C5H11NO3/c7-2-3-5(9)4(8)1-6-3/h3-9H,1-2H2 |
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Synonyms | Value | Source |
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(+)-1,4-Dideoxy-1,4-imino-D-ribitol | HMDB | 2-(Hydroxymethyl)-(2R,3R,4S)-3,4-pyrrolidinediol | HMDB | 2-(Hydroxymethyl)-(2R-(2a,3b,4b))-3,4-pyrrolidinediol | HMDB | 2-(Hydroxymethyl)-[2R-(2a,3b,4b)]-3,4-pyrrolidinediol | HMDB | 2-HYDROXYMETHYL-pyrrolidine-3,4-diol | HMDB | DRIB | HMDB | Iminoribitol | HMDB | IMR | HMDB |
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Chemical Formula | C5H11NO3 |
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Average Molecular Weight | 133.1457 |
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Monoisotopic Molecular Weight | 133.073893223 |
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IUPAC Name | 2-(hydroxymethyl)pyrrolidine-3,4-diol |
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Traditional Name | 2-(hydroxymethyl)pyrrolidine-3,4-diol |
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CAS Registry Number | 105990-41-8 |
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SMILES | OCC1NCC(O)C1O |
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InChI Identifier | InChI=1S/C5H11NO3/c7-2-3-5(9)4(8)1-6-3/h3-9H,1-2H2 |
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InChI Key | OQEBIHBLFRADNM-UHFFFAOYSA-N |
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Chemical Taxonomy |
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Description | Belongs to the class of organic compounds known as pyrrolidines. Pyrrolidines are compounds containing a pyrrolidine ring, which is a five-membered saturated aliphatic heterocycle with one nitrogen atom and four carbon atoms. |
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Kingdom | Organic compounds |
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Super Class | Organoheterocyclic compounds |
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Class | Pyrrolidines |
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Sub Class | Not Available |
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Direct Parent | Pyrrolidines |
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Alternative Parents | |
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Substituents | - Pyrrolidine
- 1,2-aminoalcohol
- Secondary alcohol
- Secondary aliphatic amine
- Secondary amine
- Azacycle
- Organopnictogen compound
- Organic oxygen compound
- Primary alcohol
- Organooxygen compound
- Organonitrogen compound
- Organic nitrogen compound
- Amine
- Alcohol
- Hydrocarbon derivative
- Aliphatic heteromonocyclic compound
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Molecular Framework | Aliphatic heteromonocyclic compounds |
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External Descriptors | Not Available |
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Ontology |
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Physiological effect | Not Available |
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Disposition | |
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Process | Not Available |
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Role | |
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Physical Properties |
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State | Not Available |
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Experimental Molecular Properties | Property | Value | Reference |
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Melting Point | Not Available | Not Available | Boiling Point | Not Available | Not Available | Water Solubility | Not Available | Not Available | LogP | Not Available | Not Available |
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Experimental Chromatographic Properties | Not Available |
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Predicted Molecular Properties | |
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Predicted Chromatographic Properties | Predicted Collision Cross SectionsPredicted Kovats Retention IndicesUnderivatizedDerivatizedDerivative Name / Structure | SMILES | Kovats RI Value | Column Type | Reference |
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1,4-Dideoxy-1,4-imino-D-ribitol,1TMS,isomer #1 | C[Si](C)(C)OCC1NCC(O)C1O | 1496.9 | Semi standard non polar | 33892256 | 1,4-Dideoxy-1,4-imino-D-ribitol,1TMS,isomer #2 | C[Si](C)(C)OC1CNC(CO)C1O | 1496.8 | Semi standard non polar | 33892256 | 1,4-Dideoxy-1,4-imino-D-ribitol,1TMS,isomer #3 | C[Si](C)(C)OC1C(O)CNC1CO | 1493.7 | Semi standard non polar | 33892256 | 1,4-Dideoxy-1,4-imino-D-ribitol,1TMS,isomer #4 | C[Si](C)(C)N1CC(O)C(O)C1CO | 1458.1 | Semi standard non polar | 33892256 | 1,4-Dideoxy-1,4-imino-D-ribitol,2TMS,isomer #1 | C[Si](C)(C)OCC1NCC(O[Si](C)(C)C)C1O | 1527.9 | Semi standard non polar | 33892256 | 1,4-Dideoxy-1,4-imino-D-ribitol,2TMS,isomer #2 | C[Si](C)(C)OCC1NCC(O)C1O[Si](C)(C)C | 1523.7 | Semi standard non polar | 33892256 | 1,4-Dideoxy-1,4-imino-D-ribitol,2TMS,isomer #3 | C[Si](C)(C)OCC1C(O)C(O)CN1[Si](C)(C)C | 1526.1 | Semi standard non polar | 33892256 | 1,4-Dideoxy-1,4-imino-D-ribitol,2TMS,isomer #4 | C[Si](C)(C)OC1CNC(CO)C1O[Si](C)(C)C | 1529.3 | Semi standard non polar | 33892256 | 1,4-Dideoxy-1,4-imino-D-ribitol,2TMS,isomer #5 | C[Si](C)(C)OC1CN([Si](C)(C)C)C(CO)C1O | 1513.2 | Semi standard non polar | 33892256 | 1,4-Dideoxy-1,4-imino-D-ribitol,2TMS,isomer #6 | C[Si](C)(C)OC1C(O)CN([Si](C)(C)C)C1CO | 1519.8 | Semi standard non polar | 33892256 | 1,4-Dideoxy-1,4-imino-D-ribitol,3TMS,isomer #1 | C[Si](C)(C)OCC1NCC(O[Si](C)(C)C)C1O[Si](C)(C)C | 1561.1 | Semi standard non polar | 33892256 | 1,4-Dideoxy-1,4-imino-D-ribitol,3TMS,isomer #2 | C[Si](C)(C)OCC1C(O)C(O[Si](C)(C)C)CN1[Si](C)(C)C | 1586.1 | Semi standard non polar | 33892256 | 1,4-Dideoxy-1,4-imino-D-ribitol,3TMS,isomer #3 | C[Si](C)(C)OCC1C(O[Si](C)(C)C)C(O)CN1[Si](C)(C)C | 1588.2 | Semi standard non polar | 33892256 | 1,4-Dideoxy-1,4-imino-D-ribitol,3TMS,isomer #4 | C[Si](C)(C)OC1CN([Si](C)(C)C)C(CO)C1O[Si](C)(C)C | 1559.5 | Semi standard non polar | 33892256 | 1,4-Dideoxy-1,4-imino-D-ribitol,4TMS,isomer #1 | C[Si](C)(C)OCC1C(O[Si](C)(C)C)C(O[Si](C)(C)C)CN1[Si](C)(C)C | 1650.7 | Semi standard non polar | 33892256 | 1,4-Dideoxy-1,4-imino-D-ribitol,4TMS,isomer #1 | C[Si](C)(C)OCC1C(O[Si](C)(C)C)C(O[Si](C)(C)C)CN1[Si](C)(C)C | 1697.9 | Standard non polar | 33892256 | 1,4-Dideoxy-1,4-imino-D-ribitol,1TBDMS,isomer #1 | CC(C)(C)[Si](C)(C)OCC1NCC(O)C1O | 1719.5 | Semi standard non polar | 33892256 | 1,4-Dideoxy-1,4-imino-D-ribitol,1TBDMS,isomer #2 | CC(C)(C)[Si](C)(C)OC1CNC(CO)C1O | 1718.2 | Semi standard non polar | 33892256 | 1,4-Dideoxy-1,4-imino-D-ribitol,1TBDMS,isomer #3 | CC(C)(C)[Si](C)(C)OC1C(O)CNC1CO | 1724.6 | Semi standard non polar | 33892256 | 1,4-Dideoxy-1,4-imino-D-ribitol,1TBDMS,isomer #4 | CC(C)(C)[Si](C)(C)N1CC(O)C(O)C1CO | 1690.8 | Semi standard non polar | 33892256 | 1,4-Dideoxy-1,4-imino-D-ribitol,2TBDMS,isomer #1 | CC(C)(C)[Si](C)(C)OCC1NCC(O[Si](C)(C)C(C)(C)C)C1O | 1953.5 | Semi standard non polar | 33892256 | 1,4-Dideoxy-1,4-imino-D-ribitol,2TBDMS,isomer #2 | CC(C)(C)[Si](C)(C)OCC1NCC(O)C1O[Si](C)(C)C(C)(C)C | 1948.3 | Semi standard non polar | 33892256 | 1,4-Dideoxy-1,4-imino-D-ribitol,2TBDMS,isomer #3 | CC(C)(C)[Si](C)(C)OCC1C(O)C(O)CN1[Si](C)(C)C(C)(C)C | 2002.5 | Semi standard non polar | 33892256 | 1,4-Dideoxy-1,4-imino-D-ribitol,2TBDMS,isomer #4 | CC(C)(C)[Si](C)(C)OC1CNC(CO)C1O[Si](C)(C)C(C)(C)C | 1971.8 | Semi standard non polar | 33892256 | 1,4-Dideoxy-1,4-imino-D-ribitol,2TBDMS,isomer #5 | CC(C)(C)[Si](C)(C)OC1CN([Si](C)(C)C(C)(C)C)C(CO)C1O | 1976.2 | Semi standard non polar | 33892256 | 1,4-Dideoxy-1,4-imino-D-ribitol,2TBDMS,isomer #6 | CC(C)(C)[Si](C)(C)OC1C(O)CN([Si](C)(C)C(C)(C)C)C1CO | 1981.5 | Semi standard non polar | 33892256 | 1,4-Dideoxy-1,4-imino-D-ribitol,3TBDMS,isomer #1 | CC(C)(C)[Si](C)(C)OCC1NCC(O[Si](C)(C)C(C)(C)C)C1O[Si](C)(C)C(C)(C)C | 2202.4 | Semi standard non polar | 33892256 | 1,4-Dideoxy-1,4-imino-D-ribitol,3TBDMS,isomer #2 | CC(C)(C)[Si](C)(C)OCC1C(O)C(O[Si](C)(C)C(C)(C)C)CN1[Si](C)(C)C(C)(C)C | 2255.6 | Semi standard non polar | 33892256 | 1,4-Dideoxy-1,4-imino-D-ribitol,3TBDMS,isomer #3 | CC(C)(C)[Si](C)(C)OCC1C(O[Si](C)(C)C(C)(C)C)C(O)CN1[Si](C)(C)C(C)(C)C | 2261.7 | Semi standard non polar | 33892256 | 1,4-Dideoxy-1,4-imino-D-ribitol,3TBDMS,isomer #4 | CC(C)(C)[Si](C)(C)OC1CN([Si](C)(C)C(C)(C)C)C(CO)C1O[Si](C)(C)C(C)(C)C | 2245.9 | Semi standard non polar | 33892256 | 1,4-Dideoxy-1,4-imino-D-ribitol,4TBDMS,isomer #1 | CC(C)(C)[Si](C)(C)OCC1C(O[Si](C)(C)C(C)(C)C)C(O[Si](C)(C)C(C)(C)C)CN1[Si](C)(C)C(C)(C)C | 2523.9 | Semi standard non polar | 33892256 | 1,4-Dideoxy-1,4-imino-D-ribitol,4TBDMS,isomer #1 | CC(C)(C)[Si](C)(C)OCC1C(O[Si](C)(C)C(C)(C)C)C(O[Si](C)(C)C(C)(C)C)CN1[Si](C)(C)C(C)(C)C | 2505.6 | Standard non polar | 33892256 |
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| GC-MS SpectraSpectrum Type | Description | Splash Key | Deposition Date | Source | View |
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Predicted GC-MS | Predicted GC-MS Spectrum - 1,4-Dideoxy-1,4-imino-D-ribitol GC-MS (Non-derivatized) - 70eV, Positive | splash10-00di-9300000000-f23c9a4f171e1152f8cd | 2017-09-01 | Wishart Lab | View Spectrum | Predicted GC-MS | Predicted GC-MS Spectrum - 1,4-Dideoxy-1,4-imino-D-ribitol GC-MS (3 TMS) - 70eV, Positive | splash10-0032-4291000000-b3faddd4d0656d194754 | 2017-10-06 | Wishart Lab | View Spectrum | Predicted GC-MS | Predicted GC-MS Spectrum - 1,4-Dideoxy-1,4-imino-D-ribitol GC-MS (Non-derivatized) - 70eV, Positive | Not Available | 2021-10-12 | Wishart Lab | View Spectrum | Predicted GC-MS | Predicted GC-MS Spectrum - 1,4-Dideoxy-1,4-imino-D-ribitol GC-MS (Non-derivatized) - 70eV, Positive | Not Available | 2021-10-12 | Wishart Lab | View Spectrum | Predicted GC-MS | Predicted GC-MS Spectrum - 1,4-Dideoxy-1,4-imino-D-ribitol GC-MS (Non-derivatized) - 70eV, Positive | Not Available | 2021-10-12 | Wishart Lab | View Spectrum |
MS/MS SpectraSpectrum Type | Description | Splash Key | Deposition Date | Source | View |
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Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - 1,4-Dideoxy-1,4-imino-D-ribitol 10V, Positive-QTOF | splash10-00lr-1900000000-a3fd3276e89e0741b78b | 2015-04-24 | Wishart Lab | View Spectrum | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - 1,4-Dideoxy-1,4-imino-D-ribitol 20V, Positive-QTOF | splash10-00kb-9700000000-262f43f2a39279208ba9 | 2015-04-24 | Wishart Lab | View Spectrum | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - 1,4-Dideoxy-1,4-imino-D-ribitol 40V, Positive-QTOF | splash10-0002-9000000000-f592217fddd172b3bceb | 2015-04-24 | Wishart Lab | View Spectrum | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - 1,4-Dideoxy-1,4-imino-D-ribitol 10V, Negative-QTOF | splash10-001i-1900000000-79101bb450a92b55c707 | 2015-04-25 | Wishart Lab | View Spectrum | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - 1,4-Dideoxy-1,4-imino-D-ribitol 20V, Negative-QTOF | splash10-0w30-5900000000-131d7c9c8faad0c36439 | 2015-04-25 | Wishart Lab | View Spectrum | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - 1,4-Dideoxy-1,4-imino-D-ribitol 40V, Negative-QTOF | splash10-0006-9000000000-a8f9f66c63509a9cc353 | 2015-04-25 | Wishart Lab | View Spectrum | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - 1,4-Dideoxy-1,4-imino-D-ribitol 10V, Negative-QTOF | splash10-0ue9-0900000000-d7ddef4d09137dda450c | 2021-09-23 | Wishart Lab | View Spectrum | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - 1,4-Dideoxy-1,4-imino-D-ribitol 20V, Negative-QTOF | splash10-0zgi-9500000000-571e3b76b70f4e7e07fd | 2021-09-23 | Wishart Lab | View Spectrum | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - 1,4-Dideoxy-1,4-imino-D-ribitol 40V, Negative-QTOF | splash10-0a4l-9000000000-cd83a3c53da085536ec7 | 2021-09-23 | Wishart Lab | View Spectrum | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - 1,4-Dideoxy-1,4-imino-D-ribitol 10V, Positive-QTOF | splash10-015a-5900000000-e3cf2bca6b9da0221bb9 | 2021-09-24 | Wishart Lab | View Spectrum | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - 1,4-Dideoxy-1,4-imino-D-ribitol 20V, Positive-QTOF | splash10-0002-9200000000-5d29c2463648aff0184a | 2021-09-24 | Wishart Lab | View Spectrum | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - 1,4-Dideoxy-1,4-imino-D-ribitol 40V, Positive-QTOF | splash10-0007-9000000000-f4c4773da7b9c344047c | 2021-09-24 | Wishart Lab | View Spectrum |
NMR SpectraSpectrum Type | Description | Deposition Date | Source | View |
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Predicted 1D NMR | 13C NMR Spectrum (1D, 100 MHz, D2O, predicted) | 2021-09-24 | Wishart Lab | View Spectrum | Predicted 1D NMR | 1H NMR Spectrum (1D, 100 MHz, D2O, predicted) | 2021-09-24 | Wishart Lab | View Spectrum | Predicted 1D NMR | 13C NMR Spectrum (1D, 1000 MHz, D2O, predicted) | 2021-09-24 | Wishart Lab | View Spectrum | Predicted 1D NMR | 1H NMR Spectrum (1D, 1000 MHz, D2O, predicted) | 2021-09-24 | Wishart Lab | View Spectrum | Predicted 1D NMR | 13C NMR Spectrum (1D, 200 MHz, D2O, predicted) | 2021-09-24 | Wishart Lab | View Spectrum | Predicted 1D NMR | 1H NMR Spectrum (1D, 200 MHz, D2O, predicted) | 2021-09-24 | Wishart Lab | View Spectrum | Predicted 1D NMR | 13C NMR Spectrum (1D, 300 MHz, D2O, predicted) | 2021-09-24 | Wishart Lab | View Spectrum | Predicted 1D NMR | 1H NMR Spectrum (1D, 300 MHz, D2O, predicted) | 2021-09-24 | Wishart Lab | View Spectrum | Predicted 1D NMR | 13C NMR Spectrum (1D, 400 MHz, D2O, predicted) | 2021-09-24 | Wishart Lab | View Spectrum | Predicted 1D NMR | 1H NMR Spectrum (1D, 400 MHz, D2O, predicted) | 2021-09-24 | Wishart Lab | View Spectrum | Predicted 1D NMR | 13C NMR Spectrum (1D, 500 MHz, D2O, predicted) | 2021-09-24 | Wishart Lab | View Spectrum | Predicted 1D NMR | 1H NMR Spectrum (1D, 500 MHz, D2O, predicted) | 2021-09-24 | Wishart Lab | View Spectrum | Predicted 1D NMR | 13C NMR Spectrum (1D, 600 MHz, D2O, predicted) | 2021-09-24 | Wishart Lab | View Spectrum | Predicted 1D NMR | 1H NMR Spectrum (1D, 600 MHz, D2O, predicted) | 2021-09-24 | Wishart Lab | View Spectrum | Predicted 1D NMR | 13C NMR Spectrum (1D, 700 MHz, D2O, predicted) | 2021-09-24 | Wishart Lab | View Spectrum | Predicted 1D NMR | 1H NMR Spectrum (1D, 700 MHz, D2O, predicted) | 2021-09-24 | Wishart Lab | View Spectrum | Predicted 1D NMR | 13C NMR Spectrum (1D, 800 MHz, D2O, predicted) | 2021-09-24 | Wishart Lab | View Spectrum | Predicted 1D NMR | 1H NMR Spectrum (1D, 800 MHz, D2O, predicted) | 2021-09-24 | Wishart Lab | View Spectrum | Predicted 1D NMR | 13C NMR Spectrum (1D, 900 MHz, D2O, predicted) | 2021-09-24 | Wishart Lab | View Spectrum | Predicted 1D NMR | 1H NMR Spectrum (1D, 900 MHz, D2O, predicted) | 2021-09-24 | Wishart Lab | View Spectrum |
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