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Record Information
Version5.0
StatusExpected but not Quantified
Creation Date2012-09-12 02:23:36 UTC
Update Date2022-03-07 02:56:44 UTC
HMDB IDHMDB0040807
Secondary Accession Numbers
  • HMDB40807
Metabolite Identification
Common NameCaffeoylcycloartenol
DescriptionCaffeoylcycloartenol belongs to the class of organic compounds known as cycloartanols and derivatives. These are steroids containing a cycloartanol moiety. Based on a literature review a small amount of articles have been published on Caffeoylcycloartenol.
Structure
Data?1563863590
Synonyms
ValueSource
7,7,12,16-Tetramethyl-15-(6-methylhept-5-en-2-yl)pentacyclo[9.7.0.0¹,³.0³,⁸.0¹²,¹⁶]octadecan-6-yl (2E)-3-(3,4-dihydroxyphenyl)prop-2-enoic acidHMDB
Chemical FormulaC39H56O4
Average Molecular Weight588.8595
Monoisotopic Molecular Weight588.41786028
IUPAC Name7,7,12,16-tetramethyl-15-(6-methylhept-5-en-2-yl)pentacyclo[9.7.0.0¹,³.0³,⁸.0¹²,¹⁶]octadecan-6-yl (2E)-3-(3,4-dihydroxyphenyl)prop-2-enoate
Traditional Name7,7,12,16-tetramethyl-15-(6-methylhept-5-en-2-yl)pentacyclo[9.7.0.0¹,³.0³,⁸.0¹²,¹⁶]octadecan-6-yl (2E)-3-(3,4-dihydroxyphenyl)prop-2-enoate
CAS Registry Number75884-34-3
SMILES
CC(CCC=C(C)C)C1CCC2(C)C3CCC4C5(CC35CCC12C)CCC(OC(=O)\C=C\C1=CC(O)=C(O)C=C1)C4(C)C
InChI Identifier
InChI=1S/C39H56O4/c1-25(2)9-8-10-26(3)28-17-19-37(7)32-15-14-31-35(4,5)33(18-20-38(31)24-39(32,38)22-21-36(28,37)6)43-34(42)16-12-27-11-13-29(40)30(41)23-27/h9,11-13,16,23,26,28,31-33,40-41H,8,10,14-15,17-22,24H2,1-7H3/b16-12+
InChI KeyQKNCKSQAXGWPIK-FOWTUZBSSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as cycloartanols and derivatives. These are steroids containing a cycloartanol moiety.
KingdomOrganic compounds
Super ClassLipids and lipid-like molecules
ClassSteroids and steroid derivatives
Sub ClassCycloartanols and derivatives
Direct ParentCycloartanols and derivatives
Alternative Parents
Substituents
  • Cycloartanol-skeleton
  • Cycloartane-skeleton
  • 9b,19-cyclo-lanostane-skeleton
  • Triterpenoid
  • Steroid ester
  • Hydroxycinnamic acid or derivatives
  • Cinnamic acid ester
  • Cinnamic acid or derivatives
  • Coumaric acid or derivatives
  • Catechol
  • Styrene
  • Fatty acid ester
  • Phenol
  • 1-hydroxy-4-unsubstituted benzenoid
  • 1-hydroxy-2-unsubstituted benzenoid
  • Monocyclic benzene moiety
  • Benzenoid
  • Fatty acyl
  • Alpha,beta-unsaturated carboxylic ester
  • Enoate ester
  • Carboxylic acid ester
  • Carboxylic acid derivative
  • Monocarboxylic acid or derivatives
  • Organic oxygen compound
  • Hydrocarbon derivative
  • Organic oxide
  • Carbonyl group
  • Organooxygen compound
  • Aromatic homopolycyclic compound
Molecular FrameworkAromatic homopolycyclic compounds
External DescriptorsNot Available
Ontology
Physiological effectNot Available
Disposition
Process
Role
Physical Properties
StateNot Available
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
Water Solubility4.9e-05 g/LALOGPS
logP7.95ALOGPS
logP9.97ChemAxon
logS-7.1ALOGPS
pKa (Strongest Acidic)9.21ChemAxon
pKa (Strongest Basic)-6.3ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count3ChemAxon
Hydrogen Donor Count2ChemAxon
Polar Surface Area66.76 ŲChemAxon
Rotatable Bond Count8ChemAxon
Refractivity175.56 m³·mol⁻¹ChemAxon
Polarizability72.52 ųChemAxon
Number of Rings6ChemAxon
BioavailabilityNoChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleYesChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
DeepCCS[M-2H]-276.99930932474
DeepCCS[M+Na]+252.78730932474
AllCCS[M+H]+254.632859911
AllCCS[M+H-H2O]+253.632859911
AllCCS[M+NH4]+255.532859911
AllCCS[M+Na]+255.832859911
AllCCS[M-H]-233.432859911
AllCCS[M+Na-2H]-236.932859911
AllCCS[M+HCOO]-240.932859911

Predicted Retention Times

Underivatized

Chromatographic MethodRetention TimeReference
Measured using a Waters Acquity ultraperformance liquid chromatography (UPLC) ethylene-bridged hybrid (BEH) C18 column (100 mm × 2.1 mm; 1.7 μmparticle diameter). Predicted by Afia on May 17, 2022. Predicted by Afia on May 17, 2022.9.44 minutes32390414
Predicted by Siyang on May 30, 202228.0704 minutes33406817
Predicted by Siyang using ReTip algorithm on June 8, 20221.36 minutes32390414
Fem_Long = Waters ACQUITY UPLC HSS T3 C18 with Water:MeOH and 0.1% Formic Acid4102.9 seconds40023050
Fem_Lipids = Ascentis Express C18 with (60:40 water:ACN):(90:10 IPA:ACN) and 10mM NH4COOH + 0.1% Formic Acid614.6 seconds40023050
Life_Old = Waters ACQUITY UPLC BEH C18 with Water:(20:80 acetone:ACN) and 0.1% Formic Acid344.8 seconds40023050
Life_New = RP Waters ACQUITY UPLC HSS T3 C18 with Water:(30:70 MeOH:ACN) and 0.1% Formic Acid232.2 seconds40023050
RIKEN = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid960.7 seconds40023050
Eawag_XBridgeC18 = XBridge C18 3.5u 2.1x50 mm with Water:MeOH and 0.1% Formic Acid1350.3 seconds40023050
BfG_NTS_RP1 =Agilent Zorbax Eclipse Plus C18 (2.1 mm x 150 mm, 3.5 um) with Water:ACN and 0.1% Formic Acid1284.2 seconds40023050
HILIC_BDD_2 = Merck SeQuant ZIC-HILIC with ACN(0.1% formic acid):water(16 mM ammonium formate)111.3 seconds40023050
UniToyama_Atlantis = RP Waters Atlantis T3 (2.1 x 150 mm, 5 um) with ACN:Water and 0.1% Formic Acid2416.7 seconds40023050
BDD_C18 = Hypersil Gold 1.9µm C18 with Water:ACN and 0.1% Formic Acid875.0 seconds40023050
UFZ_Phenomenex = Kinetex Core-Shell C18 2.6 um, 3.0 x 100 mm, Phenomenex with Water:MeOH and 0.1% Formic Acid2149.2 seconds40023050
SNU_RIKEN_POS = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid867.9 seconds40023050
RPMMFDA = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid719.6 seconds40023050
MTBLS87 = Merck SeQuant ZIC-pHILIC column with ACN:Water and :ammonium carbonate295.9 seconds40023050
KI_GIAR_zic_HILIC_pH2_7 = Merck SeQuant ZIC-HILIC with ACN:Water and 0.1% FA562.6 seconds40023050
Meister zic-pHILIC pH9.3 = Merck SeQuant ZIC-pHILIC column with ACN:Water 5mM NH4Ac pH9.3 and 5mM ammonium acetate in water9.7 seconds40023050

Predicted Kovats Retention Indices

Underivatized

MetaboliteSMILESKovats RI ValueColumn TypeReference
CaffeoylcycloartenolCC(CCC=C(C)C)C1CCC2(C)C3CCC4C5(CC35CCC12C)CCC(OC(=O)\C=C\C1=CC(O)=C(O)C=C1)C4(C)C4548.1Standard polar33892256
CaffeoylcycloartenolCC(CCC=C(C)C)C1CCC2(C)C3CCC4C5(CC35CCC12C)CCC(OC(=O)\C=C\C1=CC(O)=C(O)C=C1)C4(C)C4529.3Standard non polar33892256
CaffeoylcycloartenolCC(CCC=C(C)C)C1CCC2(C)C3CCC4C5(CC35CCC12C)CCC(OC(=O)\C=C\C1=CC(O)=C(O)C=C1)C4(C)C4953.8Semi standard non polar33892256

Derivatized

Derivative Name / StructureSMILESKovats RI ValueColumn TypeReference
Caffeoylcycloartenol,1TMS,isomer #1CC(C)=CCCC(C)C1CCC2(C)C3CCC4C(C)(C)C(OC(=O)/C=C/C5=CC=C(O)C(O[Si](C)(C)C)=C5)CCC45CC35CCC12C4861.8Semi standard non polar33892256
Caffeoylcycloartenol,1TMS,isomer #2CC(C)=CCCC(C)C1CCC2(C)C3CCC4C(C)(C)C(OC(=O)/C=C/C5=CC=C(O[Si](C)(C)C)C(O)=C5)CCC45CC35CCC12C4873.8Semi standard non polar33892256
Caffeoylcycloartenol,2TMS,isomer #1CC(C)=CCCC(C)C1CCC2(C)C3CCC4C(C)(C)C(OC(=O)/C=C/C5=CC=C(O[Si](C)(C)C)C(O[Si](C)(C)C)=C5)CCC45CC35CCC12C4877.7Semi standard non polar33892256
Caffeoylcycloartenol,1TBDMS,isomer #1CC(C)=CCCC(C)C1CCC2(C)C3CCC4C(C)(C)C(OC(=O)/C=C/C5=CC=C(O)C(O[Si](C)(C)C(C)(C)C)=C5)CCC45CC35CCC12C5094.3Semi standard non polar33892256
Caffeoylcycloartenol,1TBDMS,isomer #2CC(C)=CCCC(C)C1CCC2(C)C3CCC4C(C)(C)C(OC(=O)/C=C/C5=CC=C(O[Si](C)(C)C(C)(C)C)C(O)=C5)CCC45CC35CCC12C5097.9Semi standard non polar33892256
Caffeoylcycloartenol,2TBDMS,isomer #1CC(C)=CCCC(C)C1CCC2(C)C3CCC4C(C)(C)C(OC(=O)/C=C/C5=CC=C(O[Si](C)(C)C(C)(C)C)C(O[Si](C)(C)C(C)(C)C)=C5)CCC45CC35CCC12C5303.1Semi standard non polar33892256
Spectra

GC-MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted GC-MSPredicted GC-MS Spectrum - Caffeoylcycloartenol GC-MS (Non-derivatized) - 70eV, Positivesplash10-074r-4412390000-f325d7595ff3855eef3d2017-09-01Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Caffeoylcycloartenol GC-MS (1 TMS) - 70eV, Positivesplash10-0002-4041219000-b5b537a4c4d380deb0cf2017-10-06Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Caffeoylcycloartenol GC-MS ("Caffeoylcycloartenol,1TMS,#1" TMS) - 70eV, PositiveNot Available2021-10-14Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Caffeoylcycloartenol GC-MS (TMS_1_2) - 70eV, PositiveNot Available2021-10-15Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Caffeoylcycloartenol GC-MS (TMS_2_1) - 70eV, PositiveNot Available2021-10-15Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Caffeoylcycloartenol GC-MS (TBDMS_1_1) - 70eV, PositiveNot Available2021-10-15Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Caffeoylcycloartenol GC-MS (TBDMS_1_2) - 70eV, PositiveNot Available2021-10-15Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Caffeoylcycloartenol GC-MS (TBDMS_2_1) - 70eV, PositiveNot Available2021-10-15Wishart LabView Spectrum

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Caffeoylcycloartenol 10V, Positive-QTOFsplash10-01w0-0600590000-c5e92fad5c235e1255b42017-09-01Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Caffeoylcycloartenol 20V, Positive-QTOFsplash10-076r-2903520000-15f7f36dbcb4b1e0618d2017-09-01Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Caffeoylcycloartenol 40V, Positive-QTOFsplash10-01ba-2309110000-deaa45511b059ec6e6ee2017-09-01Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Caffeoylcycloartenol 10V, Negative-QTOFsplash10-000i-0200490000-73afbd5a50c9261f4a5c2017-09-01Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Caffeoylcycloartenol 20V, Negative-QTOFsplash10-004i-0600930000-33c23fd4ab55e56827a82017-09-01Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Caffeoylcycloartenol 40V, Negative-QTOFsplash10-0bvi-1503910000-72beb0e86793b2f260482017-09-01Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Caffeoylcycloartenol 10V, Positive-QTOFsplash10-0a5j-9112130000-b85ec9b6b0eba530760d2021-09-21Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Caffeoylcycloartenol 20V, Positive-QTOFsplash10-0a59-9000010000-b487eace5ce4684bf5332021-09-21Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Caffeoylcycloartenol 40V, Positive-QTOFsplash10-0f72-4892110000-c95a372c33f84de1b1872021-09-21Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Caffeoylcycloartenol 10V, Negative-QTOFsplash10-000i-0000090000-f17e6bb519336edc101f2021-09-25Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Caffeoylcycloartenol 20V, Negative-QTOFsplash10-000i-0800190000-11c694847ba47fd06b882021-09-25Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Caffeoylcycloartenol 40V, Negative-QTOFsplash10-001u-3900110000-f7c23306e68e6a5647312021-09-25Wishart LabView Spectrum
Biological Properties
Cellular Locations
  • Membrane
Biospecimen LocationsNot Available
Tissue LocationsNot Available
Pathways
Normal Concentrations
Not Available
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDFDB020623
KNApSAcK IDNot Available
Chemspider ID74886488
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound14156424
PDB IDNot Available
ChEBI ID172136
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDrw1886551
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General References
  1. Simons K, Toomre D: Lipid rafts and signal transduction. Nat Rev Mol Cell Biol. 2000 Oct;1(1):31-9. [PubMed:11413487 ]
  2. Watson AD: Thematic review series: systems biology approaches to metabolic and cardiovascular disorders. Lipidomics: a global approach to lipid analysis in biological systems. J Lipid Res. 2006 Oct;47(10):2101-11. Epub 2006 Aug 10. [PubMed:16902246 ]
  3. Sethi JK, Vidal-Puig AJ: Thematic review series: adipocyte biology. Adipose tissue function and plasticity orchestrate nutritional adaptation. J Lipid Res. 2007 Jun;48(6):1253-62. Epub 2007 Mar 20. [PubMed:17374880 ]
  4. Lingwood D, Simons K: Lipid rafts as a membrane-organizing principle. Science. 2010 Jan 1;327(5961):46-50. doi: 10.1126/science.1174621. [PubMed:20044567 ]
  5. (). Yannai, Shmuel. (2004) Dictionary of food compounds with CD-ROM: Additives, flavors, and ingredients. Boca Raton: Chapman & Hall/CRC.. .
  6. Gunstone, Frank D., John L. Harwood, and Albert J. Dijkstra (2007). The lipid handbook with CD-ROM. CRC Press.