Hmdb loader
Record Information
Version5.0
StatusExpected but not Quantified
Creation Date2012-09-12 02:40:30 UTC
Update Date2022-03-07 02:56:51 UTC
HMDB IDHMDB0041037
Secondary Accession Numbers
  • HMDB41037
Metabolite Identification
Common Name8-Deoxy-11-hydroxy-13-chlorogrosheimin
Description8-Deoxy-11-hydroxy-13-chlorogrosheimin belongs to the class of organic compounds known as guaianolides and derivatives. These are diterpene lactones with a structure characterized by the presence of a gamma-lactone fused to a guaiane, forming 3,6,9-trimethyl-azuleno[4,5-b]furan-2-one or a derivative. Based on a literature review a small amount of articles have been published on 8-Deoxy-11-hydroxy-13-chlorogrosheimin.
Structure
Data?1563863617
SynonymsNot Available
Chemical FormulaC15H19ClO4
Average Molecular Weight298.762
Monoisotopic Molecular Weight298.097186803
IUPAC Name3-(chloromethyl)-3-hydroxy-9-methyl-6-methylidene-dodecahydroazuleno[4,5-b]furan-2,8-dione
Traditional Name3-(chloromethyl)-3-hydroxy-9-methyl-6-methylidene-octahydroazuleno[4,5-b]furan-2,8-dione
CAS Registry Number83551-02-4
SMILES
CC1C2C(CC1=O)C(=C)CCC1C2OC(=O)C1(O)CCl
InChI Identifier
InChI=1S/C15H19ClO4/c1-7-3-4-10-13(20-14(18)15(10,19)6-16)12-8(2)11(17)5-9(7)12/h8-10,12-13,19H,1,3-6H2,2H3
InChI KeyRXUIKPFKVDKIDO-UHFFFAOYSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as guaianolides and derivatives. These are diterpene lactones with a structure characterized by the presence of a gamma-lactone fused to a guaiane, forming 3,6,9-trimethyl-azuleno[4,5-b]furan-2-one or a derivative.
KingdomOrganic compounds
Super ClassLipids and lipid-like molecules
ClassPrenol lipids
Sub ClassTerpene lactones
Direct ParentGuaianolides and derivatives
Alternative Parents
Substituents
  • Guaianolide-skeleton
  • Guaiane sesquiterpenoid
  • Sesquiterpenoid
  • Gamma butyrolactone
  • Tertiary alcohol
  • Tetrahydrofuran
  • Carboxylic acid ester
  • Chlorohydrin
  • Halohydrin
  • Ketone
  • Lactone
  • Cyclic ketone
  • Monocarboxylic acid or derivatives
  • Oxacycle
  • Organoheterocyclic compound
  • Carboxylic acid derivative
  • Carbonyl group
  • Alkyl halide
  • Alkyl chloride
  • Hydrocarbon derivative
  • Organic oxide
  • Organic oxygen compound
  • Alcohol
  • Organohalogen compound
  • Organochloride
  • Organooxygen compound
  • Aliphatic heteropolycyclic compound
Molecular FrameworkAliphatic heteropolycyclic compounds
External DescriptorsNot Available
Ontology
Physiological effectNot Available
Disposition
Process
Role
Physical Properties
StateSolid
Experimental Molecular Properties
PropertyValueReference
Melting Point228 - 230 °CNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
Water Solubility1.24 g/LALOGPS
logP0.92ALOGPS
logP1.73ChemAxon
logS-2.4ALOGPS
pKa (Strongest Acidic)11.39ChemAxon
pKa (Strongest Basic)-4.4ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count3ChemAxon
Hydrogen Donor Count1ChemAxon
Polar Surface Area63.6 ŲChemAxon
Rotatable Bond Count1ChemAxon
Refractivity73.18 m³·mol⁻¹ChemAxon
Polarizability29.51 ųChemAxon
Number of Rings3ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterYesChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
DeepCCS[M+H]+171.59630932474
DeepCCS[M-H]-169.23830932474
DeepCCS[M-2H]-202.12430932474
DeepCCS[M+Na]+177.68930932474
AllCCS[M+H]+167.032859911
AllCCS[M+H-H2O]+163.732859911
AllCCS[M+NH4]+170.032859911
AllCCS[M+Na]+170.932859911
AllCCS[M-H]-169.732859911
AllCCS[M+Na-2H]-169.732859911
AllCCS[M+HCOO]-169.832859911

Predicted Retention Times

Underivatized

Chromatographic MethodRetention TimeReference
Measured using a Waters Acquity ultraperformance liquid chromatography (UPLC) ethylene-bridged hybrid (BEH) C18 column (100 mm × 2.1 mm; 1.7 μmparticle diameter). Predicted by Afia on May 17, 2022. Predicted by Afia on May 17, 2022.5.97 minutes32390414
Predicted by Siyang on May 30, 202213.2791 minutes33406817
Predicted by Siyang using ReTip algorithm on June 8, 20220.95 minutes32390414
Fem_Long = Waters ACQUITY UPLC HSS T3 C18 with Water:MeOH and 0.1% Formic Acid2294.5 seconds40023050
Fem_Lipids = Ascentis Express C18 with (60:40 water:ACN):(90:10 IPA:ACN) and 10mM NH4COOH + 0.1% Formic Acid336.0 seconds40023050
Life_Old = Waters ACQUITY UPLC BEH C18 with Water:(20:80 acetone:ACN) and 0.1% Formic Acid159.3 seconds40023050
Life_New = RP Waters ACQUITY UPLC HSS T3 C18 with Water:(30:70 MeOH:ACN) and 0.1% Formic Acid179.7 seconds40023050
RIKEN = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid120.9 seconds40023050
Eawag_XBridgeC18 = XBridge C18 3.5u 2.1x50 mm with Water:MeOH and 0.1% Formic Acid532.3 seconds40023050
BfG_NTS_RP1 =Agilent Zorbax Eclipse Plus C18 (2.1 mm x 150 mm, 3.5 um) with Water:ACN and 0.1% Formic Acid730.3 seconds40023050
HILIC_BDD_2 = Merck SeQuant ZIC-HILIC with ACN(0.1% formic acid):water(16 mM ammonium formate)69.4 seconds40023050
UniToyama_Atlantis = RP Waters Atlantis T3 (2.1 x 150 mm, 5 um) with ACN:Water and 0.1% Formic Acid1071.4 seconds40023050
BDD_C18 = Hypersil Gold 1.9µm C18 with Water:ACN and 0.1% Formic Acid424.5 seconds40023050
UFZ_Phenomenex = Kinetex Core-Shell C18 2.6 um, 3.0 x 100 mm, Phenomenex with Water:MeOH and 0.1% Formic Acid1380.5 seconds40023050
SNU_RIKEN_POS = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid330.4 seconds40023050
RPMMFDA = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid398.5 seconds40023050
MTBLS87 = Merck SeQuant ZIC-pHILIC column with ACN:Water and :ammonium carbonate298.5 seconds40023050
KI_GIAR_zic_HILIC_pH2_7 = Merck SeQuant ZIC-HILIC with ACN:Water and 0.1% FA312.5 seconds40023050
Meister zic-pHILIC pH9.3 = Merck SeQuant ZIC-pHILIC column with ACN:Water 5mM NH4Ac pH9.3 and 5mM ammonium acetate in water31.8 seconds40023050

Predicted Kovats Retention Indices

Underivatized

MetaboliteSMILESKovats RI ValueColumn TypeReference
8-Deoxy-11-hydroxy-13-chlorogrosheiminCC1C2C(CC1=O)C(=C)CCC1C2OC(=O)C1(O)CCl3172.2Standard polar33892256
8-Deoxy-11-hydroxy-13-chlorogrosheiminCC1C2C(CC1=O)C(=C)CCC1C2OC(=O)C1(O)CCl2384.1Standard non polar33892256
8-Deoxy-11-hydroxy-13-chlorogrosheiminCC1C2C(CC1=O)C(=C)CCC1C2OC(=O)C1(O)CCl2425.0Semi standard non polar33892256

Derivatized

Derivative Name / StructureSMILESKovats RI ValueColumn TypeReference
8-Deoxy-11-hydroxy-13-chlorogrosheimin,1TMS,isomer #1C=C1CCC2C(OC(=O)C2(CCl)O[Si](C)(C)C)C2C(C)C(=O)CC122345.8Semi standard non polar33892256
8-Deoxy-11-hydroxy-13-chlorogrosheimin,1TMS,isomer #2C=C1CCC2C(OC(=O)C2(O)CCl)C2C(C)=C(O[Si](C)(C)C)CC122344.3Semi standard non polar33892256
8-Deoxy-11-hydroxy-13-chlorogrosheimin,1TMS,isomer #3C=C1CCC2C(OC(=O)C2(O)CCl)C2C(C)C(O[Si](C)(C)C)=CC122266.7Semi standard non polar33892256
8-Deoxy-11-hydroxy-13-chlorogrosheimin,2TMS,isomer #1C=C1CCC2C(OC(=O)C2(CCl)O[Si](C)(C)C)C2C(C)=C(O[Si](C)(C)C)CC122439.4Semi standard non polar33892256
8-Deoxy-11-hydroxy-13-chlorogrosheimin,2TMS,isomer #1C=C1CCC2C(OC(=O)C2(CCl)O[Si](C)(C)C)C2C(C)=C(O[Si](C)(C)C)CC122317.4Standard non polar33892256
8-Deoxy-11-hydroxy-13-chlorogrosheimin,2TMS,isomer #2C=C1CCC2C(OC(=O)C2(CCl)O[Si](C)(C)C)C2C(C)C(O[Si](C)(C)C)=CC122353.2Semi standard non polar33892256
8-Deoxy-11-hydroxy-13-chlorogrosheimin,2TMS,isomer #2C=C1CCC2C(OC(=O)C2(CCl)O[Si](C)(C)C)C2C(C)C(O[Si](C)(C)C)=CC122275.2Standard non polar33892256
8-Deoxy-11-hydroxy-13-chlorogrosheimin,1TBDMS,isomer #1C=C1CCC2C(OC(=O)C2(CCl)O[Si](C)(C)C(C)(C)C)C2C(C)C(=O)CC122582.0Semi standard non polar33892256
8-Deoxy-11-hydroxy-13-chlorogrosheimin,1TBDMS,isomer #2C=C1CCC2C(OC(=O)C2(O)CCl)C2C(C)=C(O[Si](C)(C)C(C)(C)C)CC122560.3Semi standard non polar33892256
8-Deoxy-11-hydroxy-13-chlorogrosheimin,1TBDMS,isomer #3C=C1CCC2C(OC(=O)C2(O)CCl)C2C(C)C(O[Si](C)(C)C(C)(C)C)=CC122494.6Semi standard non polar33892256
8-Deoxy-11-hydroxy-13-chlorogrosheimin,2TBDMS,isomer #1C=C1CCC2C(OC(=O)C2(CCl)O[Si](C)(C)C(C)(C)C)C2C(C)=C(O[Si](C)(C)C(C)(C)C)CC122891.9Semi standard non polar33892256
8-Deoxy-11-hydroxy-13-chlorogrosheimin,2TBDMS,isomer #1C=C1CCC2C(OC(=O)C2(CCl)O[Si](C)(C)C(C)(C)C)C2C(C)=C(O[Si](C)(C)C(C)(C)C)CC122771.8Standard non polar33892256
8-Deoxy-11-hydroxy-13-chlorogrosheimin,2TBDMS,isomer #2C=C1CCC2C(OC(=O)C2(CCl)O[Si](C)(C)C(C)(C)C)C2C(C)C(O[Si](C)(C)C(C)(C)C)=CC122815.1Semi standard non polar33892256
8-Deoxy-11-hydroxy-13-chlorogrosheimin,2TBDMS,isomer #2C=C1CCC2C(OC(=O)C2(CCl)O[Si](C)(C)C(C)(C)C)C2C(C)C(O[Si](C)(C)C(C)(C)C)=CC122633.9Standard non polar33892256
Spectra

GC-MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted GC-MSPredicted GC-MS Spectrum - 8-Deoxy-11-hydroxy-13-chlorogrosheimin GC-MS (Non-derivatized) - 70eV, Positivesplash10-008c-2920000000-44ae0b69be8d75a2a1872017-09-01Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - 8-Deoxy-11-hydroxy-13-chlorogrosheimin GC-MS (1 TMS) - 70eV, Positivesplash10-004i-4902000000-50f17b549f2e6e7f90b42017-10-06Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - 8-Deoxy-11-hydroxy-13-chlorogrosheimin GC-MS (Non-derivatized) - 70eV, PositiveNot Available2021-10-12Wishart LabView Spectrum

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 8-Deoxy-11-hydroxy-13-chlorogrosheimin 10V, Positive-QTOFsplash10-002b-0890000000-40f6f688c2acce1d11842017-09-01Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 8-Deoxy-11-hydroxy-13-chlorogrosheimin 20V, Positive-QTOFsplash10-009t-0390000000-08991e47ab6812ec5ab42017-09-01Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 8-Deoxy-11-hydroxy-13-chlorogrosheimin 40V, Positive-QTOFsplash10-014i-5900000000-8b89b2cc6d7b62e097112017-09-01Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 8-Deoxy-11-hydroxy-13-chlorogrosheimin 10V, Negative-QTOFsplash10-0002-0090000000-47a20af26bd64262e0c12017-09-01Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 8-Deoxy-11-hydroxy-13-chlorogrosheimin 20V, Negative-QTOFsplash10-0002-0090000000-e826cd39455497d2dccd2017-09-01Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 8-Deoxy-11-hydroxy-13-chlorogrosheimin 40V, Negative-QTOFsplash10-03xr-3900000000-7666c2778dae979efc5c2017-09-01Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 8-Deoxy-11-hydroxy-13-chlorogrosheimin 10V, Positive-QTOFsplash10-0002-0090000000-714a78dc20d5d6ba33e82021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 8-Deoxy-11-hydroxy-13-chlorogrosheimin 20V, Positive-QTOFsplash10-000t-0090000000-570bd856dcf23ec3ece32021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 8-Deoxy-11-hydroxy-13-chlorogrosheimin 40V, Positive-QTOFsplash10-05di-2930000000-92a37ea277bcf8d701f92021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 8-Deoxy-11-hydroxy-13-chlorogrosheimin 10V, Negative-QTOFsplash10-0002-0090000000-86aef986368eb478dde32021-09-25Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 8-Deoxy-11-hydroxy-13-chlorogrosheimin 20V, Negative-QTOFsplash10-0002-1090000000-c3e577c87e0a2ce704972021-09-25Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 8-Deoxy-11-hydroxy-13-chlorogrosheimin 40V, Negative-QTOFsplash10-001l-4290000000-d45be43cfe8adaedd5c92021-09-25Wishart LabView Spectrum
Biological Properties
Cellular Locations
  • Cytoplasm
  • Extracellular
Biospecimen LocationsNot Available
Tissue LocationsNot Available
Pathways
Normal Concentrations
Not Available
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDFDB020909
KNApSAcK IDC00054168
Chemspider ID35015082
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound131753015
PDB IDNot Available
ChEBI IDNot Available
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General References
  1. Simons K, Toomre D: Lipid rafts and signal transduction. Nat Rev Mol Cell Biol. 2000 Oct;1(1):31-9. [PubMed:11413487 ]
  2. Watson AD: Thematic review series: systems biology approaches to metabolic and cardiovascular disorders. Lipidomics: a global approach to lipid analysis in biological systems. J Lipid Res. 2006 Oct;47(10):2101-11. Epub 2006 Aug 10. [PubMed:16902246 ]
  3. Sethi JK, Vidal-Puig AJ: Thematic review series: adipocyte biology. Adipose tissue function and plasticity orchestrate nutritional adaptation. J Lipid Res. 2007 Jun;48(6):1253-62. Epub 2007 Mar 20. [PubMed:17374880 ]
  4. Lingwood D, Simons K: Lipid rafts as a membrane-organizing principle. Science. 2010 Jan 1;327(5961):46-50. doi: 10.1126/science.1174621. [PubMed:20044567 ]
  5. (). Yannai, Shmuel. (2004) Dictionary of food compounds with CD-ROM: Additives, flavors, and ingredients. Boca Raton: Chapman & Hall/CRC.. .
  6. Gunstone, Frank D., John L. Harwood, and Albert J. Dijkstra (2007). The lipid handbook with CD-ROM. CRC Press.